HHsearch alignment for GI: 254780616 and conserved domain: TIGR03323

>TIGR03323 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit gamma. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 gamma subunit of this apparent second ATP synthase.
Probab=100.00  E-value=0  Score=577.61  Aligned_cols=283  Identities=16%  Similarity=0.239  Sum_probs=243.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf             99999987568999999999999999999999983023699999999999730157544210002443334325531146
Q gi|254780616|r    7 FKSRIHSVKETQKITEAMQLISVTKLRRAKEAIQNASSYQFHIKDFFMKCVVGEHFQEYPSPFVRGTGKDKVYLLVICTA   86 (294)
Q Consensus         7 ik~RI~sv~~~~KITkaMkmVA~skl~ka~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvitS   86 (294)
T Consensus         1 ik~RI~SV~st~KITkAMkmVAasKlrkaq~~~~~~r~Y~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~IvitS   79 (285)
T TIGR03323         1 LRRKIESAADLQSVVRTMKALAAVSIRQYEDAVRALDDYYRTVELGLAVCLRRIPLAALSPSGPNQK-VSGHTGAIVFGS   79 (285)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCEEEEEEEEC
T ss_conf             9337877759999999999999999999999998546489999999999985065654575544456-567079999968


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             42442001147999999987653203885038887040379851023332011111477664036889999976557650
Q gi|254780616|r   87 EKGLCGGFNAQIIRFARDRIKEFIAEGKEIKLLIIGRKGYEGLRKEFSSMIIDSIELSSKKGVDFVQAHGIARQITSLFT  166 (294)
Q Consensus        87 DrGLCG~~Ns~i~k~~~~~i~~~~~~~~~~~l~~vGkKg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~l~~~~~  166 (294)
T Consensus        80 DrGLCG~fNs~v~k~~~~~~~~~---~~~~~l~~vGkK~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  155 (285)
T TIGR03323        80 DQGLVGQFNEVILTFAAEELARL---PGEATIWAVGERVASRLEDSGLTIGELFRLPNSVGAIT-PLVSELLIEVEARRE  155 (285)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHC---CCCCEEEEECHHHHHHHHHCCCCCEEEEECCCCCCCHH-HHHHHHHHHHHHHHH
T ss_conf             87554023499999999999856---89958999713899999875997215441677552278-999999999998864


Q ss_pred             CCCCCCEEEEECCCCCCCCCCEEEEECCCCCHH--HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             678750588620113443222044204788735--422110036554322479967878999998999999999999999
Q gi|254780616|r  167 SNVFDLCFFIYSEFKSIIQQIPIISKIIPVDWS--QDLEQKQQDILSVYRYESTLYSVLDDIVLRSISSRVFWIILENKA  244 (294)
Q Consensus       167 ~~~~d~v~iiYn~f~s~~~q~p~~~~llP~~~~--~~~~~~~~~~~~~~~~Ep~~~~il~~l~~~yl~~~l~~alles~a  244 (294)
T Consensus       156 ~g~~d~v~iiyn~f~s~~~q~~~~~~llP~~~~~~~~~~~~~~~~~~~~~~e~~~e~vl~~ll~~yl~~~ly~alleS~a  235 (285)
T TIGR03323       156 QGQLAELYLFFNRPSSGGSYEPTCQRLLPLDETWQRQLATQQWPTKCLPELMGEPEETFSALIREYLFVSLFRACAESLA  235 (285)
T ss_pred             CCCCEEEEEEECCCCCCEEEEEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             59813999995234555110035687238980444431124576545420258999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999999989999999999999998988988999998525319
Q gi|254780616|r  245 SEVGARITAMDNATRNAGQMVDNLVLSYNRQRQMRITTELIEIIAGAEVV  294 (294)
Q Consensus       245 SE~aaRm~AM~~At~Na~~~i~~L~l~~Nk~RQ~~IT~El~EIisGaeAl  294 (294)
T Consensus       236 SE~aaRm~AM~~At~NA~eli~~Ltl~yNr~RQa~IT~El~EIvsGaeAl  285 (285)
T TIGR03323       236 SENASRLAAMQRAEKNIDELLDDLNRRFHRLRQSAIDEELFDVVSGFEAL  285 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             89999999999999969999999999999999998899999998777439