HHsearch alignment for GI: 254780616 and conserved domain: TIGR03323
>TIGR03323 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit gamma. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 gamma subunit of this apparent second ATP synthase.
Probab=100.00 E-value=0 Score=577.61 Aligned_cols=283 Identities=16% Similarity=0.239 Sum_probs=243.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 99999987568999999999999999999999983023699999999999730157544210002443334325531146
Q gi|254780616|r 7 FKSRIHSVKETQKITEAMQLISVTKLRRAKEAIQNASSYQFHIKDFFMKCVVGEHFQEYPSPFVRGTGKDKVYLLVICTA 86 (294)
Q Consensus 7 ik~RI~sv~~~~KITkaMkmVA~skl~ka~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvitS 86 (294)
T Consensus 1 ik~RI~SV~st~KITkAMkmVAasKlrkaq~~~~~~r~Y~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~IvitS 79 (285)
T TIGR03323 1 LRRKIESAADLQSVVRTMKALAAVSIRQYEDAVRALDDYYRTVELGLAVCLRRIPLAALSPSGPNQK-VSGHTGAIVFGS 79 (285)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCEEEEEEEEC
T ss_conf 9337877759999999999999999999999998546489999999999985065654575544456-567079999968
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 42442001147999999987653203885038887040379851023332011111477664036889999976557650
Q gi|254780616|r 87 EKGLCGGFNAQIIRFARDRIKEFIAEGKEIKLLIIGRKGYEGLRKEFSSMIIDSIELSSKKGVDFVQAHGIARQITSLFT 166 (294)
Q Consensus 87 DrGLCG~~Ns~i~k~~~~~i~~~~~~~~~~~l~~vGkKg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~l~~~~~ 166 (294)
T Consensus 80 DrGLCG~fNs~v~k~~~~~~~~~---~~~~~l~~vGkK~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 155 (285)
T TIGR03323 80 DQGLVGQFNEVILTFAAEELARL---PGEATIWAVGERVASRLEDSGLTIGELFRLPNSVGAIT-PLVSELLIEVEARRE 155 (285)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHC---CCCCEEEEECHHHHHHHHHCCCCCEEEEECCCCCCCHH-HHHHHHHHHHHHHHH
T ss_conf 87554023499999999999856---89958999713899999875997215441677552278-999999999998864
Q ss_pred CCCCCCEEEEECCCCCCCCCCEEEEECCCCCHH--HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 678750588620113443222044204788735--422110036554322479967878999998999999999999999
Q gi|254780616|r 167 SNVFDLCFFIYSEFKSIIQQIPIISKIIPVDWS--QDLEQKQQDILSVYRYESTLYSVLDDIVLRSISSRVFWIILENKA 244 (294)
Q Consensus 167 ~~~~d~v~iiYn~f~s~~~q~p~~~~llP~~~~--~~~~~~~~~~~~~~~~Ep~~~~il~~l~~~yl~~~l~~alles~a 244 (294)
T Consensus 156 ~g~~d~v~iiyn~f~s~~~q~~~~~~llP~~~~~~~~~~~~~~~~~~~~~~e~~~e~vl~~ll~~yl~~~ly~alleS~a 235 (285)
T TIGR03323 156 QGQLAELYLFFNRPSSGGSYEPTCQRLLPLDETWQRQLATQQWPTKCLPELMGEPEETFSALIREYLFVSLFRACAESLA 235 (285)
T ss_pred CCCCEEEEEEECCCCCCEEEEEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 59813999995234555110035687238980444431124576545420258999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999989999999999999998988988999998525319
Q gi|254780616|r 245 SEVGARITAMDNATRNAGQMVDNLVLSYNRQRQMRITTELIEIIAGAEVV 294 (294)
Q Consensus 245 SE~aaRm~AM~~At~Na~~~i~~L~l~~Nk~RQ~~IT~El~EIisGaeAl 294 (294)
T Consensus 236 SE~aaRm~AM~~At~NA~eli~~Ltl~yNr~RQa~IT~El~EIvsGaeAl 285 (285)
T TIGR03323 236 SENASRLAAMQRAEKNIDELLDDLNRRFHRLRQSAIDEELFDVVSGFEAL 285 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 89999999999999969999999999999999998899999998777439