Query gi|254780616|ref|YP_003065029.1| F0F1 ATP synthase subunit gamma [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 294
No_of_seqs 111 out of 2347
Neff 7.8
Searched_HMMs 23785
Date Tue May 31 19:54:13 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780616.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xok_G ATP synthase subunit ga 100.0 0 0 561.4 28.6 277 1-294 33-310 (311)
2 3oee_G ATP synthase subunit ga 100.0 0 0 544.8 29.8 277 2-294 1-277 (278)
3 2ck3_G ATP synthase gamma chai 100.0 0 0 549.9 17.0 272 2-294 1-272 (272)
4 2qe7_G ATP synthase subunit ga 100.0 0 0 566.6 -5.0 285 1-294 1-285 (286)
5 1fs0_G ATP synthase gamma subu 100.0 0 0 416.4 22.2 230 19-255 1-230 (230)
6 1oao_C CODH, carbon monoxide d 45.0 14 0.00059 15.9 5.5 23 80-103 517-540 (729)
7 1t70_A Phosphatase; crystal, X 43.9 1.5 6.2E-05 22.1 -2.2 12 162-173 158-169 (255)
8 1qw2_A Conserved hypothetical 40.5 8.2 0.00034 17.4 1.2 38 81-129 32-71 (102)
9 1t71_A Phosphatase, conserved; 37.7 3.2 0.00013 20.0 -1.3 12 162-173 168-179 (281)
10 2p1l_B Beclin 1; apoptosis, au 31.1 23 0.00097 14.6 2.3 20 273-292 7-26 (31)
11 2pk8_A Uncharacterized protein 31.0 23 0.00098 14.5 3.9 36 97-132 17-52 (103)
12 1l8q_A Chromosomal replication 29.7 24 0.001 14.4 3.5 15 275-289 223-238 (324)
13 3p9z_A Uroporphyrinogen III co 27.2 25 0.0011 14.3 1.9 51 77-136 36-88 (229)
14 1u55_A Heme-based methyl-accep 26.0 28 0.0012 14.0 6.2 46 61-107 108-153 (188)
15 1zv4_X RGS17, regulator of G-p 25.5 16 0.00069 15.5 0.7 33 212-244 120-156 (158)
16 3o6c_A PNP synthase, pyridoxin 25.1 30 0.0012 13.9 2.6 54 84-142 100-154 (260)
17 1t0i_A YLR011WP; FMN binding p 24.9 30 0.0013 13.9 5.1 42 81-124 4-48 (191)
18 2kii_A Putative uncharacterize 23.0 32 0.0014 13.6 2.9 44 62-106 110-153 (181)
19 2k47_A Phosphoprotein, P prote 21.6 21 0.00087 14.9 0.6 11 267-277 57-67 (79)
No 1
>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae}
Probab=100.00 E-value=0 Score=561.45 Aligned_cols=277 Identities=26% Similarity=0.344 Sum_probs=232.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 98879999999987568999999999999999999999983023699999999999730157544210002443334325
Q gi|254780616|r 1 MTSLKEFKSRIHSVKETQKITEAMQLISVTKLRRAKEAIQNASSYQFHIKDFFMKCVVGEHFQEYPSPFVRGTGKDKVYL 80 (294)
Q Consensus 1 M~~lk~ik~RI~sv~~~~KITkaMkmVA~skl~ka~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (294)
||||||||+||+||+||+||||||||||+|||||||+++..++||.+.+..++.++... .++....+ ...++.+
T Consensus 33 Ma~LkeIk~RI~SVk~t~KITkAMkmVAasKlrkaq~~~~~~r~y~~~~~~~~~~~~~~-----~~~~~~~~-~~~~k~l 106 (311)
T 2xok_G 33 YATLKEVEMRLKSIKNIEKITKTMKIVASTRLSKAEKAKISAKKMDEAEQLFYKNAETK-----NLDVEATE-TGAPKEL 106 (311)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTHHHHHHHHHHHTTCC-----C------------CEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCCCCC-CCCCCEE
T ss_conf 88289999999985598999999999999999999999986133999999998623113-----66400013-5788559
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECH-HHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 53114642442001147999999987653203885038887040-37985102333201111147766403688999997
Q gi|254780616|r 81 LVICTAEKGLCGGFNAQIIRFARDRIKEFIAEGKEIKLLIIGRK-GYEGLRKEFSSMIIDSIELSSKKGVDFVQAHGIAR 159 (294)
Q Consensus 81 ~IvitSDrGLCG~~Ns~i~k~~~~~i~~~~~~~~~~~l~~vGkK-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 159 (294)
+|||||||||||+||++|+|.+.+++++ +++..++++|.| |..++++.+.... ........+.++|.++..|++
T Consensus 107 ~IvitSDrGLCG~fNsnlik~~~~~i~~----~~~~~~~~ig~k~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~a~~I~~ 181 (311)
T 2xok_G 107 IVAITSDKGLCGSIHSQLAKAVRRHLND----QPNADIVTIGDKIKMQLLRTHPNNIK-LSINGIGKDAPTFQESALIAD 181 (311)
T ss_dssp EEEECCSCCSSTTHHHHHHHHHHHSSSS----CTTCEEEEESHHHHHHHHTTSTTTEE-EEEESCTTSCCCHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHC----CCCCCEEEEEEEEHHHHHHHCCCCCC-EEEEECCCCCCCHHHHHHHHH
T ss_conf 9999689742678999999999876410----36652799962105766532166651-366303567997999888899
Q ss_pred HHHHHHHCCCCCCEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 65576506787505886201134432220442047887354221100365543224799678789999989999999999
Q gi|254780616|r 160 QITSLFTSNVFDLCFFIYSEFKSIIQQIPIISKIIPVDWSQDLEQKQQDILSVYRYESTLYSVLDDIVLRSISSRVFWII 239 (294)
Q Consensus 160 ~l~~~~~~~~~d~v~iiYn~f~s~~~q~p~~~~llP~~~~~~~~~~~~~~~~~~~~Ep~~~~il~~l~~~yl~~~l~~al 239 (294)
.+++.|.+|++|+|+++||+|+|+++|+|+.++++|.+.... ..+ ..+.++|++++++++|+|.|+.++||+|+
T Consensus 182 ~i~~~~~~g~~d~V~iiYn~F~s~~~q~p~~~~l~p~~~~~~---~~~---~~~~~~~~~~~~l~~ll~~yl~~~i~~al 255 (311)
T 2xok_G 182 KLLSVMKAGTYPKISIFYNDPVSSLSFEPSEKPIFNAKTIEQ---SPS---FGKFEIDTDANVPRDLFEYTLANQMLTAM 255 (311)
T ss_dssp HHHHTTCCTTCSEEEEEEEECSSSSCCEEEEEEECCHHHHHH---SGG---GGGSCCCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCEEEEEEEECCCCEEEEECCCCCCCCHHHHC---CCC---CCEEEECCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999988668974489984002100365443213576013202---665---66135303113255667889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999999999989999999999999998988988999998525319
Q gi|254780616|r 240 LENKASEVGARITAMDNATRNAGQMVDNLVLSYNRQRQMRITTELIEIIAGAEVV 294 (294)
Q Consensus 240 les~aSE~aaRm~AM~~At~Na~~~i~~L~l~~Nk~RQ~~IT~El~EIisGaeAl 294 (294)
+||++|||+|||+|||+|||||+||+++|+++|||+||++||+||+|||||||||
T Consensus 256 les~aSE~aaRm~AM~~At~Na~eli~~L~l~yNk~RQa~IT~El~EIVsGaeAl 310 (311)
T 2xok_G 256 AQGYAAEISARRNAMDNASKNAGDMINRYSILYNRTRQAVITNELVDIITGASSL 310 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999999959999999999999999998899999999889864
No 2
>3oee_G ATP synthase subunit gamma; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_G* 3fks_G 2hld_G* 3oeh_G* 3ofn_G* 3oe7_G*
Probab=100.00 E-value=0 Score=544.83 Aligned_cols=277 Identities=25% Similarity=0.312 Sum_probs=232.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 88799999999875689999999999999999999999830236999999999997301575442100024433343255
Q gi|254780616|r 2 TSLKEFKSRIHSVKETQKITEAMQLISVTKLRRAKEAIQNASSYQFHIKDFFMKCVVGEHFQEYPSPFVRGTGKDKVYLL 81 (294)
Q Consensus 2 ~~lk~ik~RI~sv~~~~KITkaMkmVA~skl~ka~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (294)
|||||||+||+||+||+||||||||||+|||||+|+++...|||.+.+..++.++... ..+....+. ..++.++
T Consensus 1 A~Lkeik~RI~Sv~st~kITkAMkmVAasKlrkaq~~~~~~r~y~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~li 74 (278)
T 3oee_G 1 ATLKEVEMRLKSIKNIEKITKTMKIVASTRLSKAEKAKISAKKMDEAEQLFYKNAETK-----NLDVEATET-GAPKELI 74 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----CC-----------CEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCHHCCC-CCCCEEE
T ss_conf 9858999999998799999999999999999999999986123999999999735322-----764000014-6885599
Q ss_pred EECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 31146424420011479999999876532038850388870403798510233320111114776640368899999765
Q gi|254780616|r 82 VICTAEKGLCGGFNAQIIRFARDRIKEFIAEGKEIKLLIIGRKGYEGLRKEFSSMIIDSIELSSKKGVDFVQAHGIARQI 161 (294)
Q Consensus 82 IvitSDrGLCG~~Ns~i~k~~~~~i~~~~~~~~~~~l~~vGkKg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~l 161 (294)
|||||||||||+||++|+|.+..++.+. +....++++|++|..+++..+......+ .....+.++|..+..|++.+
T Consensus 75 IvitSDrGLCG~fNsni~k~~~~~~~~~---~~~~~~~v~~k~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~i~~~i 150 (278)
T 3oee_G 75 VAITSDKGLCGSIHSQLAKAVRRHLNDQ---PNADIVTIGDKIKMQLLRTHPNNIKLSI-NGIGKDAPTFQESALIADKL 150 (278)
T ss_dssp EEECCSCCCSTTHHHHHHHHHHHHTTSC---TTCEEEEESHHHHHHHHHHCTTTEEEEE-CSCSSSCCCHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHCC---CCCCEEEEEEEHHHHHHHHCCCCCCEEE-EECCCCCCCHHHHHHHHHHH
T ss_conf 9996897535899999999998764203---6653799962028987642065543145-20367899899999999999
Q ss_pred HHHHHCCCCCCEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 57650678750588620113443222044204788735422110036554322479967878999998999999999999
Q gi|254780616|r 162 TSLFTSNVFDLCFFIYSEFKSIIQQIPIISKIIPVDWSQDLEQKQQDILSVYRYESTLYSVLDDIVLRSISSRVFWIILE 241 (294)
Q Consensus 162 ~~~~~~~~~d~v~iiYn~f~s~~~q~p~~~~llP~~~~~~~~~~~~~~~~~~~~Ep~~~~il~~l~~~yl~~~l~~alle 241 (294)
++.|..|++|+|+++||+|+|+++|+|..++++|++.... .....+.++|++++++++|+|.|++++||++++|
T Consensus 151 ~~~~~~g~~d~v~viY~~f~s~~~q~~~~~~l~p~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~a~~e 224 (278)
T 3oee_G 151 LSVMKAGTYPKISIFYNDPVSSLSFEPSEKPIFNAKTIEQ------SPSFGKFEIDTDANVPRDLFEYTLANQMLTAMAQ 224 (278)
T ss_dssp HHTTCGGGCSEEEEEEEEECSSSCEEEEEEEECCHHHHHS------CTTSTTSCCCSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCEEEEEEECCCCCEEEEECCCCCCCHHHHCC------CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998668975488975112101354223224676123203------6554532113200104566678899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999989999999999999998988988999998525319
Q gi|254780616|r 242 NKASEVGARITAMDNATRNAGQMVDNLVLSYNRQRQMRITTELIEIIAGAEVV 294 (294)
Q Consensus 242 s~aSE~aaRm~AM~~At~Na~~~i~~L~l~~Nk~RQ~~IT~El~EIisGaeAl 294 (294)
|+||||+|||+|||+|||||+||+++|+++|||+||++||+||+|||||||||
T Consensus 225 s~aSE~aaRm~AM~~At~Na~e~i~~L~~~yNr~RQa~IT~El~EIv~GaeAl 277 (278)
T 3oee_G 225 GYAAEISARRNAMDNASKNAGDMINRYSILYNRTRQAVITNELVDIITGASSL 277 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999959999999999999999998899999999889864
No 3
>2ck3_G ATP synthase gamma chain; ATP phosphorylase, ATP phosphorylase (H+ transporting), F1FO ATP synthase, F1-ATPase, hydrolase, ATP synthesis; HET: ANP ADP; 1.9A {Bos taurus} SCOP: c.49.2.1 PDB: 1cow_G* 1bmf_G* 1e1q_G* 1e1r_G* 1efr_G* 1e79_G* 1h8h_G* 1nbm_G* 1ohh_G* 1qo1_G 1w0j_G* 1w0k_G* 1h8e_G* 2jiz_G* 2jj1_G* 2jj2_G* 2v7q_G* 2wss_G* 2xnd_G* 2w6j_G ...
Probab=100.00 E-value=0 Score=549.88 Aligned_cols=272 Identities=29% Similarity=0.442 Sum_probs=239.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 88799999999875689999999999999999999999830236999999999997301575442100024433343255
Q gi|254780616|r 2 TSLKEFKSRIHSVKETQKITEAMQLISVTKLRRAKEAIQNASSYQFHIKDFFMKCVVGEHFQEYPSPFVRGTGKDKVYLL 81 (294)
Q Consensus 2 ~~lk~ik~RI~sv~~~~KITkaMkmVA~skl~ka~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (294)
|||+|||+||+||+||+|||+||||||+|||||+|++++++|||+.....++.+ +.+..+...++.++
T Consensus 1 A~Lkeik~RI~Sv~st~kITkAMkmVAasKlrkaq~~~~~~r~Y~~~~~~~~~~------------~~~~~~~~~~~~l~ 68 (272)
T 2ck3_G 1 ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEK------------ADIKTPEDKKKHLI 68 (272)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------------------------CC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC------------CCCCCCCCCCCEEE
T ss_conf 985899999998779899999999999999999999998138668888886525------------34348544685379
Q ss_pred EECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 31146424420011479999999876532038850388870403798510233320111114776640368899999765
Q gi|254780616|r 82 VICTAEKGLCGGFNAQIIRFARDRIKEFIAEGKEIKLLIIGRKGYEGLRKEFSSMIIDSIELSSKKGVDFVQAHGIARQI 161 (294)
Q Consensus 82 IvitSDrGLCG~~Ns~i~k~~~~~i~~~~~~~~~~~l~~vGkKg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~l 161 (294)
|||||||||||+||++|+|++.+.+++...++.++.++.+|+||.+++.+.+..............++++..+..+...+
T Consensus 69 IvitSDrGLCG~fN~~iik~~~~~i~~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~ 148 (272)
T 2ck3_G 69 IGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALEL 148 (272)
T ss_dssp CCBCCSCCCSSSSHHHHC------------------CCCBSHHHHHHC----------CBCSCSSSCCCHHHHHHHHHHC
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEEHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 99846987642347789999999998863289569999986016677763067437875224567886188999999999
Q ss_pred HHHHHCCCCCCEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 57650678750588620113443222044204788735422110036554322479967878999998999999999999
Q gi|254780616|r 162 TSLFTSNVFDLCFFIYSEFKSIIQQIPIISKIIPVDWSQDLEQKQQDILSVYRYESTLYSVLDDIVLRSISSRVFWIILE 241 (294)
Q Consensus 162 ~~~~~~~~~d~v~iiYn~f~s~~~q~p~~~~llP~~~~~~~~~~~~~~~~~~~~Ep~~~~il~~l~~~yl~~~l~~alle 241 (294)
...+ +++|+|+|+||+|+|+++|.|+..+++|+++. +.....|.|||+++++|+.|+|.|++++||+|++|
T Consensus 149 ~~~~--~~~d~v~iiyn~f~s~~~q~p~~~~l~p~~~~-------~~~~~~~~~e~~~~~vl~~l~~~yl~~~l~~a~~e 219 (272)
T 2ck3_G 149 LNSG--YEFDEGSIIFNRFRSVISYKTEEKPIFSLDTI-------SSAESMSIYDDIDADVLRNYQEYSLANIIYYSLKE 219 (272)
T ss_dssp ------------CCCCCEECSSSCEECC---------------------------------------HHHHHHHHHHHHH
T ss_pred HHHH--CCCCCEEEEECCCCCCCCCCCEEEECCCCCCC-------CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8744--03661033312454421456425533788765-------42111221122178899989999899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999989999999999999998988988999998525319
Q gi|254780616|r 242 NKASEVGARITAMDNATRNAGQMVDNLVLSYNRQRQMRITTELIEIIAGAEVV 294 (294)
Q Consensus 242 s~aSE~aaRm~AM~~At~Na~~~i~~L~l~~Nk~RQ~~IT~El~EIisGaeAl 294 (294)
|+||||+|||+|||+|||||+|++++|+++|||+||++||+||+|||||||||
T Consensus 220 s~asE~aaRm~AM~~At~Na~e~i~~L~~~yNr~RQa~IT~El~EIvsGaeAl 272 (272)
T 2ck3_G 220 STTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 272 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 89999999999999999859999999999999999999999999999888549
No 4
>2qe7_G ATP synthase subunit gamma; blockage of ATP hydrolysis, F1-ATPase, single particle analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP}
Probab=100.00 E-value=0 Score=566.64 Aligned_cols=285 Identities=33% Similarity=0.537 Sum_probs=258.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 98879999999987568999999999999999999999983023699999999999730157544210002443334325
Q gi|254780616|r 1 MTSLKEFKSRIHSVKETQKITEAMQLISVTKLRRAKEAIQNASSYQFHIKDFFMKCVVGEHFQEYPSPFVRGTGKDKVYL 80 (294)
Q Consensus 1 M~~lk~ik~RI~sv~~~~KITkaMkmVA~skl~ka~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (294)
||||+|||+||+||+||+|||+||||||+||+||+|++++++|||++.+.+++.++... ..+..||++..++.+ +.+
T Consensus 1 Ma~Lkeik~RI~sv~~~~kIT~aMkmVAaaklrkaq~~~~~~r~Y~~~l~~~l~~l~~~--~~~~~~~~~~~~~~~-~~~ 77 (286)
T 2qe7_G 1 MQGMREIKRRIRSVKNTRQITKAMKMVAAAKLRRAQETAENARPYADKIKEVISSIAAG--TKDFSHPMLEARPVK-KTG 77 (286)
T ss_dssp --CCSSSSHHHHHHHHHHHHHHHHHHHHHHHTTSTTTSSSSSSSSTTCC----------------CCSSCSCCCCS-SCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCCCCCCCCCCC-CEE
T ss_conf 99879999999998789999999999999999999999997304999999999999850--756554200167878-258
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 53114642442001147999999987653203885038887040379851023332011111477664036889999976
Q gi|254780616|r 81 LVICTAEKGLCGGFNAQIIRFARDRIKEFIAEGKEIKLLIIGRKGYEGLRKEFSSMIIDSIELSSKKGVDFVQAHGIARQ 160 (294)
Q Consensus 81 ~IvitSDrGLCG~~Ns~i~k~~~~~i~~~~~~~~~~~l~~vGkKg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~ 160 (294)
+|||||||||||+||++|+|.+.+++++....+.++.++++|+||.+++++.+......+.... ..+++..+..|+..
T Consensus 78 ~IvitSDrGLCG~fNs~i~k~~~~~l~~~~~~~~~~~~~~ig~k~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~ 155 (286)
T 2qe7_G 78 YMVITSDRGLAGPYNANILRLVSKTIEERHQSKDEYVIFAVGRKGRDFFKKRGYPVVEEVTGIS--DTPSLTEIQDIAQS 155 (286)
T ss_dssp CCCCCCTTCCCTHHHHHHHTGGGTTTTSSCTTSSCCCCCCCSHHHHHHHHSSSSCCSCCCSCCC--SSCCSTTTHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHH
T ss_conf 9999679877641007799999998887651463026653221268777634435543200256--78418889888898
Q ss_pred HHHHHHCCCCCCEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55765067875058862011344322204420478873542211003655432247996787899999899999999999
Q gi|254780616|r 161 ITSLFTSNVFDLCFFIYSEFKSIIQQIPIISKIIPVDWSQDLEQKQQDILSVYRYESTLYSVLDDIVLRSISSRVFWIIL 240 (294)
Q Consensus 161 l~~~~~~~~~d~v~iiYn~f~s~~~q~p~~~~llP~~~~~~~~~~~~~~~~~~~~Ep~~~~il~~l~~~yl~~~l~~all 240 (294)
++..|..+++|+|+++||+|+|++.|+|...+++|++..... ......|+|||+++++|++|+|+|+++.||+|++
T Consensus 156 ~~~~~~~~~~d~v~v~yn~f~s~~~~~~~~~~l~p~~~~~~~----~~~~~~~~~ep~~~~il~~l~~~yl~~~l~~a~~ 231 (286)
T 2qe7_G 156 AIGMFADETFDKLTIFYNEFVSPIVQRPVEKQLLPLTSEEVL----DGPVSAYEYEPDSESVLEVLLPKYAETLIYSALL 231 (286)
T ss_dssp HHHHHSSSSCSCCCCCCCCCSBTTBCCCCCCCCSSCCC---------------------------CCCTTSSHHHHTTTT
T ss_pred HHHHHCCCCCCEEEEEEEEEECCEEEEEEEECCCCCCCHHHC----CCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 887511577533799987320344566653035677705431----4776760207899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999999989999999999999998988988999998525319
Q gi|254780616|r 241 ENKASEVGARITAMDNATRNAGQMVDNLVLSYNRQRQMRITTELIEIIAGAEVV 294 (294)
Q Consensus 241 es~aSE~aaRm~AM~~At~Na~~~i~~L~l~~Nk~RQ~~IT~El~EIisGaeAl 294 (294)
||++|||+|||+|||+|||||+|++++|+++|||+||++||+||+|||||||||
T Consensus 232 es~asE~~aR~~AM~~At~Na~~~i~~L~~~~Nr~RQ~~IT~El~EIvsGaeAl 285 (286)
T 2qe7_G 232 DAKASEFGARMTAMGNATDNATEMLETLTLQFNRARQAAITQEIAEIVAGANAL 285 (286)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999999989999999999999999999999999999889863
No 5
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1
Probab=100.00 E-value=0 Score=416.39 Aligned_cols=230 Identities=23% Similarity=0.419 Sum_probs=207.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf 99999999999999999999983023699999999999730157544210002443334325531146424420011479
Q gi|254780616|r 19 KITEAMQLISVTKLRRAKEAIQNASSYQFHIKDFFMKCVVGEHFQEYPSPFVRGTGKDKVYLLVICTAEKGLCGGFNAQI 98 (294)
Q Consensus 19 KITkaMkmVA~skl~ka~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvitSDrGLCG~~Ns~i 98 (294)
||||||||||+|||||+|++++++|||++.+.+++.++... ..+..+|++..++.+ +.++||||||||||||||++|
T Consensus 1 KITkAMkmVAaaKlrkaq~~~~~~r~Y~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~-k~~~ivitSDrGLCG~fNsni 77 (230)
T 1fs0_G 1 KITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGHLAHG--NLEYKHPYLEDRDVK-RVGYLVVSTDRGLCGGLNINL 77 (230)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCGGGSCCCCS-EEEEEEECCSSSCSTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCCCCCCCCCCCCC-EEEEEEEECCCCCCCCCCHHH
T ss_conf 97788899999999999999983040999999999999830--855346433478877-289999836963552350889
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 99999987653203885038887040379851023332011111477664036889999976557650678750588620
Q gi|254780616|r 99 IRFARDRIKEFIAEGKEIKLLIIGRKGYEGLRKEFSSMIIDSIELSSKKGVDFVQAHGIARQITSLFTSNVFDLCFFIYS 178 (294)
Q Consensus 99 ~k~~~~~i~~~~~~~~~~~l~~vGkKg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~l~~~~~~~~~d~v~iiYn 178 (294)
+|.+++.+++...+|.++.+++||+||.+|+++++.+.+..+....+ .+++..+..|++.+++.|.++++|+|+++||
T Consensus 78 ~k~~~~~~~~~~~~~~~~~~i~iGkk~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~d~v~iiYn 155 (230)
T 1fs0_G 78 FKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMGD--NPSLSELIGPVKVMLQAYDEGRLDKLYIVSN 155 (230)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESHHHHHHHHHHCCCEEEEECCCTT--CCCSHHHHHHHHHHHHHHHTTSCSCEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEEHHHHHHHHHCCCEEEEEEECCCC--CCCHHHHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 99999997665405974899997236689998618816887505787--7458999999999999875488758999950
Q ss_pred CCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11344322204420478873542211003655432247996787899999899999999999999999999999999
Q gi|254780616|r 179 EFKSIIQQIPIISKIIPVDWSQDLEQKQQDILSVYRYESTLYSVLDDIVLRSISSRVFWIILENKASEVGARITAMD 255 (294)
Q Consensus 179 ~f~s~~~q~p~~~~llP~~~~~~~~~~~~~~~~~~~~Ep~~~~il~~l~~~yl~~~l~~alles~aSE~aaRm~AM~ 255 (294)
+|+|+++|+|+.+++||+++.... ......++|+|||+++++|++|+|+|++++||+|++||.||||+|||+||+
T Consensus 156 ~f~s~~~q~p~~~~llP~~~~~~~--~~~~~~~~~~fEP~~~~vl~~L~~~yl~~~ly~al~es~aSE~aARm~AM~ 230 (230)
T 1fs0_G 156 KFINTMSQVPTISQLLPLPASDDD--DLKHKSWDYLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMK 230 (230)
T ss_dssp EEEETTEEEEEEEEEESCC---------CCCSCCCEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EECCCEEEEEEEEEECCCCCCCCC--CCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 232560046788762155433211--123578885317899999999999999999999999999999999999768
No 6
>1oao_C CODH, carbon monoxide dehydrogenase alpha subunit; electron transfer, oxidoreductase, acetyl-COA formation, WOOD/ljungdahl pathway; 1.90A {Moorella thermoacetica} SCOP: e.26.1.3 PDB: 2z8y_M 3i01_M 3i04_M 1mjg_M 1ru3_A 3git_A
Probab=44.97 E-value=14 Score=15.93 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=14.2
Q ss_pred EEEECCCCH-HHHHHHHHHHHHHHH
Q ss_conf 553114642-442001147999999
Q gi|254780616|r 80 LLVICTAEK-GLCGGFNAQIIRFAR 103 (294)
Q Consensus 80 ~~IvitSDr-GLCG~~Ns~i~k~~~ 103 (294)
+||| |.|| ||||++|=-=.|.+-
T Consensus 517 VCVV-TPeR~gLCGAisWlD~kAa~ 540 (729)
T 1oao_C 517 VCIV-TPERVGLCGAVSWLDAKASY 540 (729)
T ss_dssp CEEE-BTTBCCTTSCCCHHHHHHHH
T ss_pred EEEE-CCCCCCCCCCCCHHHHHHHH
T ss_conf 4897-89876556531123105554
No 7
>1t70_A Phosphatase; crystal, X-RAY crystallography, structural genomics, berkeley structural genomics center, BSGC, PSI; 2.30A {Deinococcus radiodurans R1} SCOP: d.159.1.9
Probab=43.90 E-value=1.5 Score=22.15 Aligned_cols=12 Identities=0% Similarity=-0.114 Sum_probs=5.4
Q ss_pred HHHHHCCCCCCE
Q ss_conf 576506787505
Q gi|254780616|r 162 TSLFTSNVFDLC 173 (294)
Q Consensus 162 ~~~~~~~~~d~v 173 (294)
+-+|..|.++.|
T Consensus 158 ~g~~ldGrvsav 169 (255)
T 1t70_A 158 MGWHLAGRVAAV 169 (255)
T ss_dssp HHHHHTTSSSEE
T ss_pred HHHHHCCCEEEE
T ss_conf 898717958999
No 8
>1qw2_A Conserved hypothetical protein TA1206; structural genomics, beta/alpha, antiparallel beta sandwich, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum} SCOP: d.249.1.1
Probab=40.46 E-value=8.2 Score=17.42 Aligned_cols=38 Identities=24% Similarity=0.450 Sum_probs=25.0
Q ss_pred EEECCCCHHH--HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHH
Q ss_conf 5311464244--200114799999998765320388503888704037985
Q gi|254780616|r 81 LVICTAEKGL--CGGFNAQIIRFARDRIKEFIAEGKEIKLLIIGRKGYEGL 129 (294)
Q Consensus 81 ~IvitSDrGL--CG~~Ns~i~k~~~~~i~~~~~~~~~~~l~~vGkKg~~~~ 129 (294)
++++.+|+|+ ||.+|-..+.. -..+...+.|-+-.+-+
T Consensus 32 Ll~i~~~~G~imCG~ldv~~~~~-----------~g~~A~rv~GV~T~edl 71 (102)
T 1qw2_A 32 LLFIKGSKGYAMCGYLNMETSNK-----------VGDIAVRVMGVKTLDDM 71 (102)
T ss_dssp EEEEECSSCEEECTTCCHHHHHH-----------TTCCEEECCSCCSHHHH
T ss_pred EEEEEECCCEEEECCCCHHHHHH-----------CCCCEEEEEEECCHHHH
T ss_conf 99999178589855427899872-----------59825999722569998
No 9
>1t71_A Phosphatase, conserved; crystal, X-RAY crystallography, structural genomics, berkeley structural genomics center, BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129} SCOP: d.159.1.9
Probab=37.66 E-value=3.2 Score=20.02 Aligned_cols=12 Identities=0% Similarity=-0.172 Sum_probs=5.0
Q ss_pred HHHHHCCCCCCE
Q ss_conf 576506787505
Q gi|254780616|r 162 TSLFTSNVFDLC 173 (294)
Q Consensus 162 ~~~~~~~~~d~v 173 (294)
+-+|..|.++.|
T Consensus 168 mg~~lDGrVsaV 179 (281)
T 1t71_A 168 FCMAFDGYVTTI 179 (281)
T ss_dssp HHHHHTTTSSEE
T ss_pred HHHHHCCCEEEE
T ss_conf 998736987899
No 10
>2p1l_B Beclin 1; apoptosis, autophagy, BH3 domain, BCL; 2.50A {Homo sapiens} PDB: 3dvu_C 2pon_A
Probab=31.06 E-value=23 Score=14.56 Aligned_cols=20 Identities=30% Similarity=0.705 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99989889889999985253
Q gi|254780616|r 273 NRQRQMRITTELIEIIAGAE 292 (294)
Q Consensus 273 Nk~RQ~~IT~El~EIisGae 292 (294)
|-.|.-++|..|.||.||-.
T Consensus 7 nlS~RlKvts~LFDiMSGqt 26 (31)
T 2p1l_B 7 NLSRRLKVTGDLFDIMSGQT 26 (31)
T ss_dssp HHHHHHHHHHHHHHHTTC--
T ss_pred CHHHHHHHHHHHHHHHCCCC
T ss_conf 34555545888888863886
No 11
>2pk8_A Uncharacterized protein PF0899; structural genomics, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=31.04 E-value=23 Score=14.54 Aligned_cols=36 Identities=19% Similarity=0.436 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHCC
Q ss_conf 799999998765320388503888704037985102
Q gi|254780616|r 97 QIIRFARDRIKEFIAEGKEIKLLIIGRKGYEGLRKE 132 (294)
Q Consensus 97 ~i~k~~~~~i~~~~~~~~~~~l~~vGkKg~~~~~~~ 132 (294)
.++....+.+.+++.+|-+..++.+|+-++.|++..
T Consensus 17 riL~~iEekinELk~dG~ePDiiL~G~eayef~~~~ 52 (103)
T 2pk8_A 17 RILGEIEEKMNELKMDGFNPDIILFGREAYNFLSNL 52 (103)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHH
T ss_conf 999999999999986589987799858999999999
No 12
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, replication initiation; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 2hcb_A*
Probab=29.67 E-value=24 Score=14.40 Aligned_cols=15 Identities=27% Similarity=0.519 Sum_probs=6.9
Q ss_pred HHHHHHHH-HHHHHHH
Q ss_conf 98988988-9999985
Q gi|254780616|r 275 QRQMRITT-ELIEIIA 289 (294)
Q Consensus 275 ~RQ~~IT~-El~EIis 289 (294)
.+...+|- +|+++|+
T Consensus 223 ~~~~~~~~~~i~~~v~ 238 (324)
T 1l8q_A 223 ERKERDKLMQIVEFVA 238 (324)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CHHCCCCHHHHHHHHH
T ss_conf 0000131878888899
No 13
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=27.18 E-value=25 Score=14.32 Aligned_cols=51 Identities=10% Similarity=0.094 Sum_probs=30.3
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH--HHCCCCEEEEEEECHHHHHHHCCCCCC
Q ss_conf 432553114642442001147999999987653--203885038887040379851023332
Q gi|254780616|r 77 KVYLLVICTAEKGLCGGFNAQIIRFARDRIKEF--IAEGKEIKLLIIGRKGYEGLRKEFSSM 136 (294)
Q Consensus 77 ~~~~~IvitSDrGLCG~~Ns~i~k~~~~~i~~~--~~~~~~~~l~~vGkKg~~~~~~~~~~~ 136 (294)
..+-+|++||-.|. +...+.+++. .....+..+++||++-...++..|...
T Consensus 36 ~~yd~iIfTS~naV---------~~~~~~l~~~~~~~~~~~~~i~aVG~~Ta~~l~~~G~~~ 88 (229)
T 3p9z_A 36 TPFNALIFTSKNAV---------FSLLETLKNSPKLKMLQNIPAYALSEPTAKTLQDHHFKV 88 (229)
T ss_dssp TTCSEEEESCHHHH---------HHHHHHTTTCHHHHHHHTSCEEESSHHHHHHHHHTTCCB
T ss_pred CCCCEEEEECHHHH---------HHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHCCCC
T ss_conf 54999999888999---------999999876444312269859999799999999709955
No 14
>1u55_A Heme-based methyl-accepting chemotaxis protein; H-NOX domain, oxygen sensor, signal transduction, signaling protein; HET: HEM; 1.77A {Thermoanaerobacter tengcongensis} SCOP: d.278.1.1 PDB: 1u4h_A* 1u56_A* 3m0b_A* 1xbn_A* 3eee_A* 3iqb_A* 3lah_A* 3lai_A*
Probab=25.97 E-value=28 Score=13.99 Aligned_cols=46 Identities=9% Similarity=0.049 Sum_probs=30.8
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 57544210002443334325531146424420011479999999876
Q gi|254780616|r 61 HFQEYPSPFVRGTGKDKVYLLVICTAEKGLCGGFNAQIIRFARDRIK 107 (294)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~IvitSDrGLCG~~Ns~i~k~~~~~i~ 107 (294)
...+...|.+.-.......+.+...|.|||| .|-..+++.+.++..
T Consensus 108 ~~p~~~~P~f~~~~~~~~~l~l~Y~S~R~l~-~~~~Gli~g~a~~f~ 153 (188)
T 1u55_A 108 MIKGATPPRLIAKPVAKDAIEMEYVSKRKMY-DYFLGLIEGSSKFFK 153 (188)
T ss_dssp TSTTCCCCBCCEEEEETTEEEEEEEETTCCH-HHHHHHHHHHHHHHT
T ss_pred HCCCCCCCCEEEEECCCCEEEEEEEECCCHH-HHHHHHHHHHHHHHC
T ss_conf 3888889914879778998999998378848-899999999999959
No 15
>1zv4_X RGS17, regulator of G-protein signaling 17; human RGSZ2, human RGS17(Z2), MU-opioid receptor interacting protein, GTPase- activating proteins (GAP); 2.40A {Homo sapiens}
Probab=25.51 E-value=16 Score=15.51 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=24.2
Q ss_pred CCCCCCCHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q ss_conf 322479967878999----998999999999999999
Q gi|254780616|r 212 VYRYESTLYSVLDDI----VLRSISSRVFWIILENKA 244 (294)
Q Consensus 212 ~~~~Ep~~~~il~~l----~~~yl~~~l~~alles~a 244 (294)
...|.+-..+|+..| +|+|+.+-+|..++++.+
T Consensus 120 ~~~F~~aq~~V~~~L~~d~f~rFl~S~~y~~~l~~~~ 156 (158)
T 1zv4_X 120 PHMYEDAQLQIYTLMHRDSFPRFLNSQIYKSFVESTA 156 (158)
T ss_dssp TTTTHHHHHHHHHHHHHTTHHHHTTSHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHCC
T ss_conf 6799999999999986581553506999999998612
No 16
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} PDB: 3o6d_A*
Probab=25.06 E-value=30 Score=13.88 Aligned_cols=54 Identities=22% Similarity=0.201 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECH-HHHHHHCCCCCCEEEEEC
Q ss_conf 14642442001147999999987653203885038887040-379851023332011111
Q gi|254780616|r 84 CTAEKGLCGGFNAQIIRFARDRIKEFIAEGKEIKLLIIGRK-GYEGLRKEFSSMIIDSIE 142 (294)
Q Consensus 84 itSDrGLCG~~Ns~i~k~~~~~i~~~~~~~~~~~l~~vGkK-g~~~~~~~~~~~~~~~~~ 142 (294)
+|||.||.= +.+- +...++.++..|..+.+|+=-.. ..+.....|.+.+--+++
T Consensus 100 lTTegGld~--~~~~---L~~~i~~lk~~gIrVSLFIDPd~~~i~~A~~~Gad~VElhTG 154 (260)
T 3o6c_A 100 LTTEGGLCL--NHAK---LKQSIEKLQNANIEVSLFINPSLEDIEKSKILKAQFIELHTG 154 (260)
T ss_dssp BCTTSSBCT--TCTT---HHHHHHHHHHTTCEEEEEECSCHHHHHHHHHTTCSEEEECCH
T ss_pred CCCCCCCCC--HHHH---HHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEEEECH
T ss_conf 324688440--0677---999999865349628999689989999984279898998345
No 17
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=24.86 E-value=30 Score=13.86 Aligned_cols=42 Identities=10% Similarity=0.143 Sum_probs=21.5
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHHHHH---HCCCCEEEEEEECH
Q ss_conf 531146424420011479999999876532---03885038887040
Q gi|254780616|r 81 LVICTAEKGLCGGFNAQIIRFARDRIKEFI---AEGKEIKLLIIGRK 124 (294)
Q Consensus 81 ~IvitSDrGLCG~~Ns~i~k~~~~~i~~~~---~~~~~~~l~~vGkK 124 (294)
+++.+|-| -|+++..+.+.+.+.+++.. ..|.++.++-+...
T Consensus 4 ~vI~GS~R--~~s~s~~la~~~~~~~~~~~~~~~~g~ev~~idl~~~ 48 (191)
T 1t0i_A 4 GIIMGSVR--AKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQI 48 (191)
T ss_dssp EEEECCCC--SSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHH
T ss_pred EEEECCCC--CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 99978999--8873499999999999986631689957999970015
No 18
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Probab=22.98 E-value=32 Score=13.63 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=29.6
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 754421000244333432553114642442001147999999987
Q gi|254780616|r 62 FQEYPSPFVRGTGKDKVYLLVICTAEKGLCGGFNAQIIRFARDRI 106 (294)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~IvitSDrGLCG~~Ns~i~k~~~~~i 106 (294)
+.+...|-+.-.......+.+-..|.||||- |-..+++.+-++.
T Consensus 110 yp~~~~P~F~~~~~~~~~l~l~Y~S~R~l~~-~~~Gli~g~a~~f 153 (181)
T 2kii_A 110 YHEPSLPHINGQLLPNNQIALRYSSPRRLCF-CAEGLLFGAAQHF 153 (181)
T ss_dssp SSCSCCCEEEEEECSSSEEEEEEECTTCCHH-HHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEEECCCCEEEEEEECCCCCHH-HHHHHHHHHHHHH
T ss_conf 8899999469897689989999973898278-9999999999995
No 19
>2k47_A Phosphoprotein, P protein, M1; flexible tail, chaperone, cytoplasm, RNA replication, virion; NMR {Vesicular stomatitis indiana virus}
Probab=21.56 E-value=21 Score=14.85 Aligned_cols=11 Identities=27% Similarity=0.320 Sum_probs=6.8
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999989
Q gi|254780616|r 267 NLVLSYNRQRQ 277 (294)
Q Consensus 267 ~L~l~~Nk~RQ 277 (294)
++..+||++||
T Consensus 57 r~kkLyNqar~ 67 (79)
T 2k47_A 57 RYKKLYNQARV 67 (79)
T ss_dssp HHHTCHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 79999999998
Done!