RPSBLAST alignment for GI: 254780616 and conserved domain: TIGR03323

>gnl|CDD|163215 TIGR03323, alt_F1F0_F1_gam, alternate F1F0 ATPase, F1 subunit gamma. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 gamma subunit of this apparent second ATP synthase. Length = 285

 Score = 56.7 bits (137), Expect = 6e-09
 Identities = 53/295 (17%), Positives = 123/295 (41%), Gaps = 27/295 (9%)

Query: 10  RIHSVKETQKITEAMQLISVTKLRRAKEAIQNASSYQFHIKDFFMKCVVGEHFQEYPSPF 69
           +I S  + Q +   M+ ++   +R+ ++A++    Y   ++     C      +  P   
Sbjct: 4   KIESAADLQSVVRTMKALAAVSIRQYEDAVRALDDYYRTVELGLAVC-----LRRIPLAA 58

Query: 70  VRGTGKDK----VYLLVICTAEKGLCGGFNAQIIRFARDRIKEFIAEGKEIKLLIIGRKG 125
           +  +G ++        ++  +++GL G FN  I+ FA    +E      E  +  +G + 
Sbjct: 59  LSPSGPNQKVSGHTGAIVFGSDQGLVGQFNEVILTFA---AEELARLPGEATIWAVGERV 115

Query: 126 YEGLRKEFSSMIIDSIELSSKKGVDFVQAHGIARQITSLFTSNVFDLCFFIYSEFKSIIQ 185
              L     ++       +S   +  + +  +           + +L  F ++   S   
Sbjct: 116 ASRLEDSGLTIGELFRLPNSVGAITPLVSELLIEVEARREQGQLAELYLF-FNRPSSGGS 174

Query: 186 QIPIISKIIPVDWSQDLEQKQQDILSVYRYES-TLYSVLDDI--VLRSISSRVFWIIL-- 240
             P   +++P+D     E  Q+  L+  ++ +  L  ++ +      ++     ++ L  
Sbjct: 175 YEPTCQRLLPLD-----ETWQRQ-LATQQWPTKCLPELMGEPEETFSALIREYLFVSLFR 228

Query: 241 ---ENKASEVGARITAMDNATRNAGQMVDNLVLSYNRQRQMRITTELIEIIAGAE 292
              E+ ASE  +R+ AM  A +N  +++D+L   ++R RQ  I  EL ++++G E
Sbjct: 229 ACAESLASENASRLAAMQRAEKNIDELLDDLNRRFHRLRQSAIDEELFDVVSGFE 283