RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780616|ref|YP_003065029.1| F0F1 ATP synthase subunit gamma [Candidatus Liberibacter asiaticus str. psy62] (294 letters) >gnl|CDD|143984 pfam00231, ATP-synt, ATP synthase. Length = 288 Score = 272 bits (698), Expect = 7e-74 Identities = 110/292 (37%), Positives = 182/292 (62%), Gaps = 5/292 (1%) Query: 3 SLKEFKSRIHSVKETQKITEAMQLISVTKLRRAKEAIQNASSYQFHIKDFFMKCVVGEHF 62 SLKE K RI SVK TQKIT+AM++++ +KLR+A+E ++ A Y I++ + Sbjct: 2 SLKEIKRRIKSVKNTQKITKAMKMVAASKLRKAQERLEAARPYAEKIREVLAELA--AAS 59 Query: 63 QEYPSPFVRGTGKDKVYLLVICTAEKGLCGGFNAQIIRFARDRIKEFIAEGKEIKLLIIG 122 ++ P + K LL++ T+++GLCGGFN+ +I+ A + IKE AEGKE+ L++IG Sbjct: 60 EDVSHPLLEQREVVKKVLLIVITSDRGLCGGFNSNVIKAALELIKELKAEGKEVDLIVIG 119 Query: 123 RKGYEGLRKEFSSMIIDSIELSSKKGVDFVQAHGIARQITSLFTSNVFDLCFFIYSEFKS 182 +KG + ++ ++I L K F +A IA ++ LF + +D + +Y++F + Sbjct: 120 KKGRDFFKRRGKNIIASFTGLGDK--PTFEEAAEIADELIELFLNGEYDEVYLVYNKFVN 177 Query: 183 IIQQIPIISKIIPVDWSQDLEQKQQDILSVYRYESTLYSVLDDIVLRSISSRVFWIILEN 242 + Q P + +++P+D ++ E++ + + Y YE + VLD ++ R + S+++ +LE+ Sbjct: 178 ALSQEPTVEQLLPLDAEEEEEEEAE-SRADYEYEPSAEEVLDALLPRYLESQLYRALLES 236 Query: 243 KASEVGARITAMDNATRNAGQMVDNLVLSYNRQRQMRITTELIEIIAGAEVV 294 ASE AR+TAMDNAT NA +++ L L YNR RQ IT ELIEI++GAE + Sbjct: 237 LASEHAARMTAMDNATDNAKELIKKLTLQYNRARQAAITQELIEIVSGAEAL 288 >gnl|CDD|30573 COG0224, AtpG, F0F1-type ATP synthase, gamma subunit [Energy production and conversion]. Length = 287 Score = 246 bits (629), Expect = 6e-66 Identities = 103/290 (35%), Positives = 171/290 (58%), Gaps = 4/290 (1%) Query: 5 KEFKSRIHSVKETQKITEAMQLISVTKLRRAKEAIQNASSYQFHIKDFFMKCVVGEHFQE 64 KE + +I SVK TQKIT+AM++++ +KLR+A+E + A Y I+ E Sbjct: 1 KEIRRKIKSVKNTQKITKAMEMVAASKLRKAQERAEAARPYAEKIRKVLGHLASAN--LE 58 Query: 65 YPSPFVRGTGKDKVYLLVICTAEKGLCGGFNAQIIRFARDRIKEFIAEGKEIKLLIIGRK 124 P ++ T + K L ++ T+++GLCGGFN+ I + + IKE +GKE+KL++IG+K Sbjct: 59 LDHPLLKPTREVKRVLYIVITSDRGLCGGFNSNIFKKVENLIKELKNKGKEVKLILIGKK 118 Query: 125 GYEGLRKEFSSMIIDSIELSSKKGVDFVQAHGIARQITSLFTSNVFDLCFFIYSEFKSII 184 G + +K +++ L F +A IA +I F D + +Y++FK+ + Sbjct: 119 GIDFFKKRGYNILESFTGLGDN--PSFEEAIQIADKILDAFLEGEIDELYLVYNKFKNAL 176 Query: 185 QQIPIISKIIPVDWSQDLEQKQQDILSVYRYESTLYSVLDDIVLRSISSRVFWIILENKA 244 Q P + +++P+D +D ++++ L Y +E +L+ ++ R + S+++ +LE+KA Sbjct: 177 SQEPTVQQLLPLDKIEDEAEEEEPGLWDYEFEPDAEEILETLLPRYLESQLYGALLESKA 236 Query: 245 SEVGARITAMDNATRNAGQMVDNLVLSYNRQRQMRITTELIEIIAGAEVV 294 SE AR+TAM NAT NAG ++ L L YN+ RQ IT ELIEI+ GAE + Sbjct: 237 SEHAARMTAMKNATDNAGDLIKELTLVYNKARQAAITQELIEIVGGAEAL 286 >gnl|CDD|36744 KOG1531, KOG1531, KOG1531, F0F1-type ATP synthase, gamma subunit [Energy production and conversion]. Length = 304 Score = 168 bits (427), Expect = 1e-42 Identities = 95/294 (32%), Positives = 162/294 (55%), Gaps = 18/294 (6%) Query: 1 MTSLKEFKSRIHSVKETQKITEAMQLISVTKLRRAKEAIQNASSYQFHIKDFFMKCVVGE 60 +LKE + R+ SVK QKIT++M++++ K RA+ A++ A Y +FF + Sbjct: 28 FATLKEIRIRLKSVKNIQKITKSMKMVAAAKYARAERALKAARPYGEGAVEFFKNIDIDV 87 Query: 61 HFQEYPSPFVRGTGKDKVYLLVICTAEKGLCGGFNAQIIRFARDRIKEFIAEGKEIKLLI 120 E G+ K LLV T+++GLCGG ++ I + AR + + + GKE++++I Sbjct: 88 PLTE--------EGEVKKVLLVAVTSDRGLCGGIHSSIAKKARRELND-LKGGKEVRVVI 138 Query: 121 IGRKGYEGLRKEFSSMIIDSIELSSKKGVDFVQAHGIARQITSLFTSNVFDLCFFIYSEF 180 IG K L + + I+ SI + F A IA +I L + FD +Y++F Sbjct: 139 IGDKIRAILLRLHPNSILLSINEIGRAPPTFEDASVIADEI--LLSGYEFDKGSIVYNKF 196 Query: 181 KSIIQQIPIISKIIPVDWSQDLEQKQQDILSVYRYESTLYSVLDDIVLRSISSRVFWIIL 240 KS++ I+P++ ++ + + + VL ++ S+++++++ + Sbjct: 197 KSVVSYETSEKPILPLE----TIEESESLSCYDSIDD---EVLQSLMEYSLANQIYYAMK 249 Query: 241 ENKASEVGARITAMDNATRNAGQMVDNLVLSYNRQRQMRITTELIEIIAGAEVV 294 E+ SE+ AR+ AMDNA++NAG+M+D L L+YNR RQ IT ELIEII+GA + Sbjct: 250 ESATSELSARMNAMDNASKNAGEMIDKLTLTYNRTRQAVITNELIEIISGASAL 303 >gnl|CDD|36506 KOG1292, KOG1292, KOG1292, Xanthine/uracil transporters [Nucleotide transport and metabolism]. Length = 510 Score = 27.9 bits (62), Expect = 3.7 Identities = 7/23 (30%), Positives = 13/23 (56%) Query: 52 FFMKCVVGEHFQEYPSPFVRGTG 74 F+ + ++F++YP P G G Sbjct: 416 IFLGLSIPQYFEQYPGPVHTGNG 438 >gnl|CDD|145680 pfam02655, ATP-grasp_3, ATP-grasp domain. No functional information or experimental verification of function is known in this family. This family appears to be an ATP-grasp domain (Pers. obs. A Bateman). Length = 160 Score = 26.6 bits (59), Expect = 8.7 Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 17/76 (22%) Query: 67 SPFVRGTGKDKVYLLVICTAEKGLCGGFNAQIIRFARDRIK--------------EFIAE 112 F+ G + + ++ EK L N Q+I A E Sbjct: 66 QEFIEGE---PLSVSLLSDGEKALPLSVNRQLIDNAGSGFVYAGNLTPSRTELKEELEEL 122 Query: 113 GKEIKLLIIGRKGYEG 128 +E+ + G +GY G Sbjct: 123 AEEVVEALPGLRGYVG 138 >gnl|CDD|36491 KOG1277, KOG1277, KOG1277, Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]. Length = 593 Score = 26.4 bits (58), Expect = 9.6 Identities = 12/46 (26%), Positives = 22/46 (47%) Query: 15 KETQKITEAMQLISVTKLRRAKEAIQNASSYQFHIKDFFMKCVVGE 60 +K + +S K++ + AI+N +Q +I D + VGE Sbjct: 99 DNVEKEVYCEKKLSEEKVKAFRYAIENDYYFQMYIDDLPIWGFVGE 144 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.323 0.137 0.381 Gapped Lambda K H 0.267 0.0657 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 3,361,544 Number of extensions: 176295 Number of successful extensions: 483 Number of sequences better than 10.0: 1 Number of HSP's gapped: 475 Number of HSP's successfully gapped: 12 Length of query: 294 Length of database: 6,263,737 Length adjustment: 93 Effective length of query: 201 Effective length of database: 4,254,100 Effective search space: 855074100 Effective search space used: 855074100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 57 (25.9 bits)