RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780616|ref|YP_003065029.1| F0F1 ATP synthase subunit
gamma [Candidatus Liberibacter asiaticus str. psy62]
         (294 letters)



>gnl|CDD|143984 pfam00231, ATP-synt, ATP synthase. 
          Length = 288

 Score =  272 bits (698), Expect = 7e-74
 Identities = 110/292 (37%), Positives = 182/292 (62%), Gaps = 5/292 (1%)

Query: 3   SLKEFKSRIHSVKETQKITEAMQLISVTKLRRAKEAIQNASSYQFHIKDFFMKCVVGEHF 62
           SLKE K RI SVK TQKIT+AM++++ +KLR+A+E ++ A  Y   I++   +       
Sbjct: 2   SLKEIKRRIKSVKNTQKITKAMKMVAASKLRKAQERLEAARPYAEKIREVLAELA--AAS 59

Query: 63  QEYPSPFVRGTGKDKVYLLVICTAEKGLCGGFNAQIIRFARDRIKEFIAEGKEIKLLIIG 122
           ++   P +      K  LL++ T+++GLCGGFN+ +I+ A + IKE  AEGKE+ L++IG
Sbjct: 60  EDVSHPLLEQREVVKKVLLIVITSDRGLCGGFNSNVIKAALELIKELKAEGKEVDLIVIG 119

Query: 123 RKGYEGLRKEFSSMIIDSIELSSKKGVDFVQAHGIARQITSLFTSNVFDLCFFIYSEFKS 182
           +KG +  ++   ++I     L  K    F +A  IA ++  LF +  +D  + +Y++F +
Sbjct: 120 KKGRDFFKRRGKNIIASFTGLGDK--PTFEEAAEIADELIELFLNGEYDEVYLVYNKFVN 177

Query: 183 IIQQIPIISKIIPVDWSQDLEQKQQDILSVYRYESTLYSVLDDIVLRSISSRVFWIILEN 242
            + Q P + +++P+D  ++ E++ +   + Y YE +   VLD ++ R + S+++  +LE+
Sbjct: 178 ALSQEPTVEQLLPLDAEEEEEEEAE-SRADYEYEPSAEEVLDALLPRYLESQLYRALLES 236

Query: 243 KASEVGARITAMDNATRNAGQMVDNLVLSYNRQRQMRITTELIEIIAGAEVV 294
            ASE  AR+TAMDNAT NA +++  L L YNR RQ  IT ELIEI++GAE +
Sbjct: 237 LASEHAARMTAMDNATDNAKELIKKLTLQYNRARQAAITQELIEIVSGAEAL 288


>gnl|CDD|30573 COG0224, AtpG, F0F1-type ATP synthase, gamma subunit [Energy
           production and conversion].
          Length = 287

 Score =  246 bits (629), Expect = 6e-66
 Identities = 103/290 (35%), Positives = 171/290 (58%), Gaps = 4/290 (1%)

Query: 5   KEFKSRIHSVKETQKITEAMQLISVTKLRRAKEAIQNASSYQFHIKDFFMKCVVGEHFQE 64
           KE + +I SVK TQKIT+AM++++ +KLR+A+E  + A  Y   I+             E
Sbjct: 1   KEIRRKIKSVKNTQKITKAMEMVAASKLRKAQERAEAARPYAEKIRKVLGHLASAN--LE 58

Query: 65  YPSPFVRGTGKDKVYLLVICTAEKGLCGGFNAQIIRFARDRIKEFIAEGKEIKLLIIGRK 124
              P ++ T + K  L ++ T+++GLCGGFN+ I +   + IKE   +GKE+KL++IG+K
Sbjct: 59  LDHPLLKPTREVKRVLYIVITSDRGLCGGFNSNIFKKVENLIKELKNKGKEVKLILIGKK 118

Query: 125 GYEGLRKEFSSMIIDSIELSSKKGVDFVQAHGIARQITSLFTSNVFDLCFFIYSEFKSII 184
           G +  +K   +++     L       F +A  IA +I   F     D  + +Y++FK+ +
Sbjct: 119 GIDFFKKRGYNILESFTGLGDN--PSFEEAIQIADKILDAFLEGEIDELYLVYNKFKNAL 176

Query: 185 QQIPIISKIIPVDWSQDLEQKQQDILSVYRYESTLYSVLDDIVLRSISSRVFWIILENKA 244
            Q P + +++P+D  +D  ++++  L  Y +E     +L+ ++ R + S+++  +LE+KA
Sbjct: 177 SQEPTVQQLLPLDKIEDEAEEEEPGLWDYEFEPDAEEILETLLPRYLESQLYGALLESKA 236

Query: 245 SEVGARITAMDNATRNAGQMVDNLVLSYNRQRQMRITTELIEIIAGAEVV 294
           SE  AR+TAM NAT NAG ++  L L YN+ RQ  IT ELIEI+ GAE +
Sbjct: 237 SEHAARMTAMKNATDNAGDLIKELTLVYNKARQAAITQELIEIVGGAEAL 286


>gnl|CDD|36744 KOG1531, KOG1531, KOG1531, F0F1-type ATP synthase, gamma subunit
           [Energy production and conversion].
          Length = 304

 Score =  168 bits (427), Expect = 1e-42
 Identities = 95/294 (32%), Positives = 162/294 (55%), Gaps = 18/294 (6%)

Query: 1   MTSLKEFKSRIHSVKETQKITEAMQLISVTKLRRAKEAIQNASSYQFHIKDFFMKCVVGE 60
             +LKE + R+ SVK  QKIT++M++++  K  RA+ A++ A  Y     +FF    +  
Sbjct: 28  FATLKEIRIRLKSVKNIQKITKSMKMVAAAKYARAERALKAARPYGEGAVEFFKNIDIDV 87

Query: 61  HFQEYPSPFVRGTGKDKVYLLVICTAEKGLCGGFNAQIIRFARDRIKEFIAEGKEIKLLI 120
              E         G+ K  LLV  T+++GLCGG ++ I + AR  + + +  GKE++++I
Sbjct: 88  PLTE--------EGEVKKVLLVAVTSDRGLCGGIHSSIAKKARRELND-LKGGKEVRVVI 138

Query: 121 IGRKGYEGLRKEFSSMIIDSIELSSKKGVDFVQAHGIARQITSLFTSNVFDLCFFIYSEF 180
           IG K    L +   + I+ SI    +    F  A  IA +I  L +   FD    +Y++F
Sbjct: 139 IGDKIRAILLRLHPNSILLSINEIGRAPPTFEDASVIADEI--LLSGYEFDKGSIVYNKF 196

Query: 181 KSIIQQIPIISKIIPVDWSQDLEQKQQDILSVYRYESTLYSVLDDIVLRSISSRVFWIIL 240
           KS++        I+P++      ++ + +      +     VL  ++  S+++++++ + 
Sbjct: 197 KSVVSYETSEKPILPLE----TIEESESLSCYDSIDD---EVLQSLMEYSLANQIYYAMK 249

Query: 241 ENKASEVGARITAMDNATRNAGQMVDNLVLSYNRQRQMRITTELIEIIAGAEVV 294
           E+  SE+ AR+ AMDNA++NAG+M+D L L+YNR RQ  IT ELIEII+GA  +
Sbjct: 250 ESATSELSARMNAMDNASKNAGEMIDKLTLTYNRTRQAVITNELIEIISGASAL 303


>gnl|CDD|36506 KOG1292, KOG1292, KOG1292, Xanthine/uracil transporters [Nucleotide
           transport and metabolism].
          Length = 510

 Score = 27.9 bits (62), Expect = 3.7
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 52  FFMKCVVGEHFQEYPSPFVRGTG 74
            F+   + ++F++YP P   G G
Sbjct: 416 IFLGLSIPQYFEQYPGPVHTGNG 438


>gnl|CDD|145680 pfam02655, ATP-grasp_3, ATP-grasp domain.  No functional
           information or experimental verification of function is
           known in this family. This family appears to be an
           ATP-grasp domain (Pers. obs. A Bateman).
          Length = 160

 Score = 26.6 bits (59), Expect = 8.7
 Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 17/76 (22%)

Query: 67  SPFVRGTGKDKVYLLVICTAEKGLCGGFNAQIIRFARDRIK--------------EFIAE 112
             F+ G     + + ++   EK L    N Q+I  A                   E    
Sbjct: 66  QEFIEGE---PLSVSLLSDGEKALPLSVNRQLIDNAGSGFVYAGNLTPSRTELKEELEEL 122

Query: 113 GKEIKLLIIGRKGYEG 128
            +E+   + G +GY G
Sbjct: 123 AEEVVEALPGLRGYVG 138


>gnl|CDD|36491 KOG1277, KOG1277, KOG1277, Endosomal membrane proteins, EMP70
           [Intracellular trafficking, secretion, and vesicular
           transport].
          Length = 593

 Score = 26.4 bits (58), Expect = 9.6
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 15  KETQKITEAMQLISVTKLRRAKEAIQNASSYQFHIKDFFMKCVVGE 60
              +K     + +S  K++  + AI+N   +Q +I D  +   VGE
Sbjct: 99  DNVEKEVYCEKKLSEEKVKAFRYAIENDYYFQMYIDDLPIWGFVGE 144


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.323    0.137    0.381 

Gapped
Lambda     K      H
   0.267   0.0657    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,361,544
Number of extensions: 176295
Number of successful extensions: 483
Number of sequences better than 10.0: 1
Number of HSP's gapped: 475
Number of HSP's successfully gapped: 12
Length of query: 294
Length of database: 6,263,737
Length adjustment: 93
Effective length of query: 201
Effective length of database: 4,254,100
Effective search space: 855074100
Effective search space used: 855074100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.9 bits)