BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780616|ref|YP_003065029.1| F0F1 ATP synthase subunit
gamma [Candidatus Liberibacter asiaticus str. psy62]
         (294 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780616|ref|YP_003065029.1| F0F1 ATP synthase subunit gamma [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 294

 Score =  600 bits (1547), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 294/294 (100%), Positives = 294/294 (100%)

Query: 1   MTSLKEFKSRIHSVKETQKITEAMQLISVTKLRRAKEAIQNASSYQFHIKDFFMKCVVGE 60
           MTSLKEFKSRIHSVKETQKITEAMQLISVTKLRRAKEAIQNASSYQFHIKDFFMKCVVGE
Sbjct: 1   MTSLKEFKSRIHSVKETQKITEAMQLISVTKLRRAKEAIQNASSYQFHIKDFFMKCVVGE 60

Query: 61  HFQEYPSPFVRGTGKDKVYLLVICTAEKGLCGGFNAQIIRFARDRIKEFIAEGKEIKLLI 120
           HFQEYPSPFVRGTGKDKVYLLVICTAEKGLCGGFNAQIIRFARDRIKEFIAEGKEIKLLI
Sbjct: 61  HFQEYPSPFVRGTGKDKVYLLVICTAEKGLCGGFNAQIIRFARDRIKEFIAEGKEIKLLI 120

Query: 121 IGRKGYEGLRKEFSSMIIDSIELSSKKGVDFVQAHGIARQITSLFTSNVFDLCFFIYSEF 180
           IGRKGYEGLRKEFSSMIIDSIELSSKKGVDFVQAHGIARQITSLFTSNVFDLCFFIYSEF
Sbjct: 121 IGRKGYEGLRKEFSSMIIDSIELSSKKGVDFVQAHGIARQITSLFTSNVFDLCFFIYSEF 180

Query: 181 KSIIQQIPIISKIIPVDWSQDLEQKQQDILSVYRYESTLYSVLDDIVLRSISSRVFWIIL 240
           KSIIQQIPIISKIIPVDWSQDLEQKQQDILSVYRYESTLYSVLDDIVLRSISSRVFWIIL
Sbjct: 181 KSIIQQIPIISKIIPVDWSQDLEQKQQDILSVYRYESTLYSVLDDIVLRSISSRVFWIIL 240

Query: 241 ENKASEVGARITAMDNATRNAGQMVDNLVLSYNRQRQMRITTELIEIIAGAEVV 294
           ENKASEVGARITAMDNATRNAGQMVDNLVLSYNRQRQMRITTELIEIIAGAEVV
Sbjct: 241 ENKASEVGARITAMDNATRNAGQMVDNLVLSYNRQRQMRITTELIEIIAGAEVV 294


>gi|254780195|ref|YP_003064608.1| CTP synthetase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 544

 Score = 26.2 bits (56), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 20/39 (51%)

Query: 77  KVYLLVICTAEKGLCGGFNAQIIRFARDRIKEFIAEGKE 115
           ++Y  VI    +G   G   Q+I    + IKEFI +G E
Sbjct: 93  RIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNE 131


>gi|254780698|ref|YP_003065111.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 336

 Score = 24.6 bits (52), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 230 SISSRVFWIILENKASEVGARITAMDNAT 258
           S S + F I++ NKA ++G + T   NA+
Sbjct: 152 SGSEKKFAILMSNKAKKIGMQNTIYKNAS 180


>gi|254781047|ref|YP_003065460.1| AFG1-family ATPase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 404

 Score = 23.9 bits (50), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 192 KIIPVDWSQDLEQKQQDILSVY 213
           +II +D  QD  +K+Q IL +Y
Sbjct: 206 EIISLDSGQDYRRKEQSILPIY 227


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.137    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 171,179
Number of Sequences: 1233
Number of extensions: 6674
Number of successful extensions: 20
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 7
length of query: 294
length of database: 328,796
effective HSP length: 73
effective length of query: 221
effective length of database: 238,787
effective search space: 52771927
effective search space used: 52771927
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 38 (19.2 bits)