HHsearch alignment for GI: 254780617 and conserved domain: CHL00060
>CHL00060 atpB ATP synthase CF1 beta subunit.
Probab=100.00 E-value=0 Score=884.33 Aligned_cols=442 Identities=23% Similarity=0.333 Sum_probs=398.9
Q ss_pred CCCEEEEEEEEEEECCEEEEECCCCCCCCCE---EEECC--------CEEEEEEE-ECCCEEEEEEECCCCCCCCCCEEE
Q ss_conf 5420103589998275899975888773747---99579--------81899992-059859999805866867898889
Q gi|254780617|r 22 DSEFSEIGRVLSIGDGIARVYGLNNIRAGEM---VQFSH--------GVYGMALN-LEVDNVGVVILGSYKEISEGDIVK 89 (509)
Q Consensus 22 ~~~~~~~G~V~~V~~giv~v~GL~~a~~GEl---v~~~~--------g~~G~Vi~-l~~d~v~i~~l~~~~gI~~G~~V~ 89 (509)
T Consensus 4 ~~~~k~~GrV~~V~G~VVdv~f-p~~~lp~i~~~l~~~~~~~~g~~~~~~~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~ 82 (480)
T CHL00060 4 TLEKKNLGRITQIIGPVLDVAF-PPGKMPNIYNALVVKGRDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVI 82 (480)
T ss_pred CCCCCCCCEEEEEEEEEEEEEE-CCCCCCHHHHEEEECCCCCCCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEE
T ss_conf 6654676089999932699993-787742144432424778777644189999999469979999656877889989999
Q ss_pred ECCCEEEEECCHHHHHCCCCHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHCCHHHHHCCCCCCCCCEEEEEC
Q ss_conf 77987886679469830003002314466444544410010135773112660014441602331011115683365524
Q gi|254780617|r 90 RTGRIVDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIG 169 (509)
Q Consensus 90 ~tg~~~~vpvG~~lLGRVvD~lG~PlDg~g~i~~~~~~~i~~~~p~~~~R~~i~~~l~TGI~~ID~l~pigrGQR~~I~g 169 (509)
T Consensus 83 ~tg~~l~VPVG~~lLGRV~d~lG~PiDg~gpi~~~~~~pi~~~aP~~~~r~~~~e~leTGIkaID~l~pigkGQRigIfg 162 (480)
T CHL00060 83 DTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFG 162 (480)
T ss_pred ECCCCEEEEECHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHCCCCCCCCCEEEEEC
T ss_conf 58995498728533168788888835788998766503256789985555677861102704443125400366887656
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCC-------EEEEEEECCCCCHHH
Q ss_conf 7788611589999999886302466787606999951677678999998511467421-------158997288788899
Q gi|254780617|r 170 DRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALS-------YSIVVVASASDPAPM 242 (509)
Q Consensus 170 ~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~-------~tvvv~a~a~~~~~~ 242 (509)
T Consensus 163 gaGvGKTvLl~eli~niak~-------~~~v~V~a~IGER~RE~~e~~~e~~e~gvl~~~~~~~s~~vlV~~~~depp~~ 235 (480)
T CHL00060 163 GAGVGKTVLIMELINNIAKA-------HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGA 235 (480)
T ss_pred CCCCCHHHHHHHHHHHHHCC-------CCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCHHH
T ss_conf 89988789999999612003-------79889999966773679999999987185533554430489997356787688
Q ss_pred HHHHHHHHHHHHHHHHCC-CCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 999887666666754204-6884799616478999998754530378754333752001246788887504544588735
Q gi|254780617|r 243 QLLAPFAGCAMGEYFRDN-GYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSL 321 (509)
Q Consensus 243 r~~ap~~a~aiAEyfr~~-G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~~~~~~~g~GSi 321 (509)
T Consensus 236 R~~~~~~a~tiAEyFRd~~~~dVLl~~D~ltR~A~A~REIslllge~P~~~GYppslf~~l~~L~ER~~~~~----~GSI 311 (480)
T CHL00060 236 RMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTK----EGSI 311 (480)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCC----CCCE
T ss_conf 999999988899999874897089995462899988878998627999866789648888778888632788----8741
Q ss_pred EEEEEEECCCCCCCCCHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCCCHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6753100367664431146688540616996150122102665433444122034-343898877556788879988767
Q gi|254780617|r 322 TALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGS-AAQVKAMKQVSGAVKGELAQYREM 400 (509)
Q Consensus 322 T~~~~v~~~~~D~~~~i~~~~~si~DG~i~l~~~l~~~g~~Paid~~~S~SRv~~-~~~~~~~~~~a~~lr~~laqy~El 400 (509)
T Consensus 312 Ta~~~V~v~~DD~tdPip~~~~silDg~ivLsr~La~~g~yPAID~l~S~Sr~m~p~iv~~~H~~~a~~v~~~L~~Y~el 391 (480)
T CHL00060 312 TSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKEL 391 (480)
T ss_pred EEEEEEEECCCCCCCCCHHHHHHHCCCEEEECHHHHHCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 56778970377666761455522125149983658878998973752010004797648999999999999999998999
Q ss_pred HHHHHH-HCC-CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 879876-338-998999999999999999669998874889999999998669806679899999999999999741599
Q gi|254780617|r 401 SSFSKF-SSD-LDSSTQKFLSKGERLTELLKQPQFSPLAMEEQVVMIFAGISGCLDEVAVSQVRKFETNFLSHMRVSSQD 478 (509)
Q Consensus 401 e~f~~f-gsd-lD~~t~~~l~rg~ri~e~LkQ~~~~p~~~~~qv~~l~a~~~G~ld~i~v~~I~~fe~~l~~~l~~~~~e 478 (509)
T Consensus 392 ~diIailG~deLs~~dk~~v~rar~l~~fl~Qpf~--------~~e~ftg~~g~~v~l~-~t~~~~~~il~g~~d~~~e~ 462 (480)
T CHL00060 392 QDIIAILGLDELSEEDRLTVARARKIERFLSQPFF--------VAEVFTGSPGKYVGLA-ETIRGFQLILSGELDGLPEQ 462 (480)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCH--------HHHHHCCCCCEEEEHH-HHHHHHHHHHCCCCCCCCHH
T ss_conf 99999758642798899999999999999658522--------3454159995386099-99999999848987779978
Q ss_pred HHHHHH
Q ss_conf 999887
Q gi|254780617|r 479 ILEDIR 484 (509)
Q Consensus 479 i~~~I~ 484 (509)
T Consensus 463 ~~~~~g 468 (480)
T CHL00060 463 AFYLVG 468 (480)
T ss_pred HHHCCC
T ss_conf 963046