HHsearch alignment for GI: 254780617 and conserved domain: COG0467
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms].
Probab=98.30 E-value=1.3e-05 Score=59.89 Aligned_cols=189 Identities=21% Similarity=0.257 Sum_probs=113.1
Q ss_pred HHHHCCHHHHHCCCC--CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH-
Q ss_conf 144416023310111--15683365524778861158999999988630246678760699995167767899999851-
Q gi|254780617|r 144 EPLSTGIKAIDSLIP--IGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKAL- 220 (509)
Q Consensus 144 ~~l~TGI~~ID~l~p--igrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l- 220 (509)
T Consensus 3 ~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--------ge~vlyvs~~e~~~~l~~~~~~~g 74 (260)
T COG0467 3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGARE--------GEPVLYVSTEESPEELLENARSFG 74 (260)
T ss_pred CCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHC--------CCEEEEEEEECCHHHHHHHHHHCC
T ss_conf 656899741888836898899789999389986899999999977626--------985899992069899999998809
Q ss_pred ------CCCCCCCEEEEEEECCCCCHHHH------HHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCC
Q ss_conf ------14674211589972887888999------998876666667542046884799616478999998754530378
Q gi|254780617|r 221 ------EDRGALSYSIVVVASASDPAPMQ------LLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRP 288 (509)
Q Consensus 221 ------~~~~~~~~tvvv~a~a~~~~~~r------~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~p 288 (509)
T Consensus 75 ~d~~~~~~~g~---l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~-~~~~ViDsi~~~~~~~~~-------- 142 (260)
T COG0467 75 WDLEVYIEKGK---LAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEG-ADRVVIDSITELTLYLND-------- 142 (260)
T ss_pred CCHHHHHHCCE---EEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCHHHHHHCCC--------
T ss_conf 97789754440---687631211125420104665228999999999998628-988999663077665278--------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCEEEEECCHHHHCCCC-CCCC
Q ss_conf 754333752001246788887504544588735675310036766443114668854061699615012210266-5433
Q gi|254780617|r 289 PGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRP-AINI 367 (509)
Q Consensus 289 p~~~gyp~~vf~~~s~l~ERa~~~~~~~g~GSiT~~~~v~~~~~D~~~~i~~~~~si~DG~i~l~~~l~~~g~~P-aid~ 367 (509)
T Consensus 143 ~~~------~----r~~~~~l~~~~~~--~~-~t~~~~~~~~~~~~~~~--~~~~~~vdgvI~l~~~~~~~~~~r~~~~i 207 (260)
T COG0467 143 PAL------V----RRILLLLKRFLKK--LG-VTSLLTTEAPVEERGES--GVEEYIVDGVIRLDLKEIEGGGDRRYLRI 207 (260)
T ss_pred HHH------H----HHHHHHHHHHHHH--CC-EEEEEEECCCCCCCCCC--CCEEEEEEEEEEEEEEECCCCEEEEEEEE
T ss_conf 257------8----9999999987650--68-48999974433466656--61421689999997772257248889999