HHsearch alignment for GI: 254780617 and conserved domain: COG0468

>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair].
Probab=96.88  E-value=0.016  Score=37.42  Aligned_cols=118  Identities=20%  Similarity=0.196  Sum_probs=67.0

Q ss_pred             CHHHHHCCHHHHHCCCC--CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf             00144416023310111--1568336552477886115899999998863024667876069999516776789999985
Q gi|254780617|r  142 VCEPLSTGIKAIDSLIP--IGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKA  219 (509)
Q Consensus       142 i~~~l~TGI~~ID~l~p--igrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~  219 (509)
T Consensus        38 ~~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~--------g~~a~fIDt-E~~l~p~r~~~l  108 (279)
T COG0468          38 DIEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKP--------GGKAAFIDT-EHALDPERAKQL  108 (279)
T ss_pred             CCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCC--------CCEEEEEEC-CCCCCHHHHHHH
T ss_conf             36601655055787746886553589984688765466899998886537--------980899958-999899999998


Q ss_pred             HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHH
Q ss_conf             11467421158997288788899999887666666754204688479961647899999
Q gi|254780617|r  220 LEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAY  278 (509)
Q Consensus       220 l~~~~~~~~tvvv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~  278 (509)
T Consensus       109 ~~~~--~d~--l~v~~~~~~e~q~~i~~~~~~~~~~------~i~LvVVDSvaa~~r~~  157 (279)
T COG0468         109 GVDL--LDN--LLVSQPDTGEQQLEIAEKLARSGAE------KIDLLVVDSVAALVRAE  157 (279)
T ss_pred             HHHH--HCC--EEEECCCCHHHHHHHHHHHHHHCCC------CCCEEEEECCCCCCHHH
T ss_conf             8754--215--3686689779999999999875468------87889982574346365