HHsearch alignment for GI: 254780617 and conserved domain: COG1066

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones].

Probab=95.42  E-value=0.19  Score=29.59  Aligned_cols=106  Identities=20%  Similarity=0.270  Sum_probs=63.7

Q ss_pred             HHHHCCHHHHHCCC--CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHC
Q ss_conf             14441602331011--1156833655247788611589999999886302466787606999951677678999998511
Q gi|254780617|r  144 EPLSTGIKAIDSLI--PIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALE  221 (509)
Q Consensus       144 ~~l~TGI~~ID~l~--pigrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~  221 (509)
T Consensus        73 ~Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~-lA~~------~--~vLYVsGEES~~QiklRA~RL~  143 (456)
T COG1066          73 PRISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR-LAKR------G--KVLYVSGEESLQQIKLRADRLG  143 (456)
T ss_pred             CCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHH-HHHC------C--CEEEEECCCCHHHHHHHHHHHC
T ss_conf             42357818887653677236617997368987798999999999-8705------9--5799967767899999999828


Q ss_pred             CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHH
Q ss_conf             46742115899728878889999988766666675420468847996164789
Q gi|254780617|r  222 DRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKH  274 (509)
Q Consensus       222 ~~~~~~~tvvv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~  274 (509)
T Consensus       144 ~~---~~~l~l~aEt~~e~I~~~l-------------~~~~p~lvVIDSIQT~  180 (456)
T COG1066         144 LP---TNNLYLLAETNLEDIIAEL-------------EQEKPDLVVIDSIQTL  180 (456)
T ss_pred             CC---CCCEEEEHHCCHHHHHHHH-------------HHCCCCEEEEECCCEE
T ss_conf             99---6455774112899999999-------------8549978999654123