HHsearch alignment for GI: 254780617 and conserved domain: COG1157
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=100.00 E-value=0 Score=865.19 Aligned_cols=419 Identities=30% Similarity=0.455 Sum_probs=392.8
Q ss_pred HHCCCCCCCEEEEEEEEEEECCEEEEECCCCCCCCCEEEECCC-----EEEEEEEECCCEEEEEEECCCCCCCCCCEEEE
Q ss_conf 8424555420103589998275899975888773747995798-----18999920598599998058668678988897
Q gi|254780617|r 16 IKDFGNDSEFSEIGRVLSIGDGIARVYGLNNIRAGEMVQFSHG-----VYGMALNLEVDNVGVVILGSYKEISEGDIVKR 90 (509)
Q Consensus 16 i~~~~~~~~~~~~G~V~~V~~giv~v~GL~~a~~GElv~~~~g-----~~G~Vi~l~~d~v~i~~l~~~~gI~~G~~V~~ 90 (509)
T Consensus 13 ~~~~~~~~~~~~~G~v~~v~G~~lea~g-~~~~iGelc~i~~~~~~~~~~aEVvgf~~~~~~L~p~~~~~gv~~g~~V~~ 91 (441)
T COG1157 13 ELALRNTDPYKRRGRLTRVTGLLLEAVG-PQARIGELCKIERSRGSEKVLAEVVGFNEERVLLMPFEPVEGVSPGAEVVP 91 (441)
T ss_pred HHHHCCCCCCEEEEEEEEEEEEEEEEEC-CCCCCCCEEEEEECCCCCCEEEEEEEECCCEEEEECCCCCCCCCCCCEEEE
T ss_conf 4310247761698789998524999844-887623569999658887414799997287689962676556778878974
Q ss_pred CCCEEEEECCHHHHHCCCCHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHCCHHHHHCCCCCCCCCEEEEECC
Q ss_conf 79878866794698300030023144664445444100101357731126600144416023310111156833655247
Q gi|254780617|r 91 TGRIVDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGD 170 (509)
Q Consensus 91 tg~~~~vpvG~~lLGRVvD~lG~PlDg~g~i~~~~~~~i~~~~p~~~~R~~i~~~l~TGI~~ID~l~pigrGQR~~I~g~ 170 (509)
T Consensus 92 ~~~~~~v~~g~~lLGRVld~~G~plDg~~~~~~~~~~~l~~~pp~pm~R~~I~~~l~tGVRaIDgllT~G~GQRiGIFAg 171 (441)
T COG1157 92 TGRPLSVPVGDALLGRVLDGLGRPLDGGGLPDGTERRPLDAPPPNPLKRRPIEEPLDTGVRAIDGLLTCGKGQRIGIFAG 171 (441)
T ss_pred CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEC
T ss_conf 59754236686665410066888577899998763231457997821026546645456144401002246746788716
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 78861158999999988630246678760699995167767899999851146742115899728878889999988766
Q gi|254780617|r 171 RKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPAPMQLLAPFAG 250 (509)
Q Consensus 171 ~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tvvv~a~a~~~~~~r~~ap~~a 250 (509)
T Consensus 172 sGVGKStL-LgMiar~t---------~aDv~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~~A 241 (441)
T COG1157 172 SGVGKSTL-LGMIARNT---------EADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESALMRLKAAFTA 241 (441)
T ss_pred CCCCHHHH-HHHHHCCC---------CCCEEEEEEEECCCHHHHHHHHHHCCHHHCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 99868999-99996246---------698799997606640599999986023303526999978988989998889999
Q ss_pred HHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECC
Q ss_conf 66667542046884799616478999998754530378754333752001246788887504544588735675310036
Q gi|254780617|r 251 CAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQ 330 (509)
Q Consensus 251 ~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~~~~~~~g~GSiT~~~~v~~~ 330 (509)
T Consensus 242 t~IAEyFRDqG~~VLL~mDSlTRfA~AqREI~LA~GEpP~~kGYppSVF~~LP~LlERaG~~----~~GsITafYTVLve 317 (441)
T COG1157 242 TTIAEYFRDQGKRVLLIMDSLTRFAMAQREIGLAAGEPPATKGYPPSVFSELPRLLERAGNG----DKGSITAFYTVLVE 317 (441)
T ss_pred HHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCC----CCCCEEEEEEEEEE
T ss_conf 99999998679859999613889999998888752899866898955988748988604899----99817899999850
Q ss_pred CCCCCCCHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
Q ss_conf 766443114668854061699615012210266543344412203434389887755678887998876787987633--
Q gi|254780617|r 331 VNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYREMSSFSKFSS-- 408 (509)
Q Consensus 331 ~~D~~~~i~~~~~si~DG~i~l~~~l~~~g~~Paid~~~S~SRv~~~~~~~~~~~~a~~lr~~laqy~Ele~f~~fgs-- 408 (509)
T Consensus 318 GDD~~dPiaD~~RsILDGHIvLsR~LA~~ghyPaIdvl~SiSRvm~~i~~~~h~~~a~~~r~lls~y~e~edLi~iGaY~ 397 (441)
T COG1157 318 GDDMNDPIADEVRSILDGHIVLSRALAEAGHYPAIDVLASISRVMPQIVSEEHRKAARRLRQLLSRYEENEDLIRIGAYQ 397 (441)
T ss_pred CCCCCCCHHHHHHHHCCCEEEEEHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 68888850456664226528973868855999974467778777664089999999999999999988778999863856
Q ss_pred -CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf -89989999999999999996699988748899999999986
Q gi|254780617|r 409 -DLDSSTQKFLSKGERLTELLKQPQFSPLAMEEQVVMIFAGI 449 (509)
Q Consensus 409 -dlD~~t~~~l~rg~ri~e~LkQ~~~~p~~~~~qv~~l~a~~ 449 (509)
T Consensus 398 ~G~D~~~D~Ai~~~p~i~~fL~Q~~~e~~~~~~t~~~L~~~~ 439 (441)
T COG1157 398 KGSDPELDKAIKLYPKIEQFLKQGIDEKSSFEETLEQLEAIL 439 (441)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 789878899997509999997189544579999999999875