HHsearch alignment for GI: 254780617 and conserved domain: PRK06002
>PRK06002 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00 E-value=0 Score=968.94 Aligned_cols=437 Identities=26% Similarity=0.394 Sum_probs=409.4
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCCEEEEEEEEEEECCEEEEECCC-CCCCCCEEEECCC---EEEEEEEECCCEEEEEEEC
Q ss_conf 8889999999999842455-542010358999827589997588-8773747995798---1899992059859999805
Q gi|254780617|r 3 IHAAEISDILRKRIKDFGN-DSEFSEIGRVLSIGDGIARVYGLN-NIRAGEMVQFSHG---VYGMALNLEVDNVGVVILG 77 (509)
Q Consensus 3 ~~~~eis~~l~~~i~~~~~-~~~~~~~G~V~~V~~giv~v~GL~-~a~~GElv~~~~g---~~G~Vi~l~~d~v~i~~l~ 77 (509)
T Consensus 1 ~~~~~~~~~l~~~~~~~~a~~p~~r~~G~V~~V~g~i~~v~GL~~~~~~Ge~~~i~~~~~~~~aeVv~~~~~~v~l~p~g 80 (450)
T PRK06002 1 MTPDNALARLAAFVQQYAAPEPLVRIGGTVSEVTPSHYRVRGLSRFVRLGDRVAIRSDGGTQLGEVVRVDEDGVLVKPFE 80 (450)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCEEEEECCCCCEEEEEEEEECCCEEEEECC
T ss_conf 97647999999999850799982345689999938189999886667779889992799717999998637818999876
Q ss_pred CCCCCCCCCEEEECCCEEEEECCHHHHHCCCCHHHCCCCCCCCCCC-CCCCHHCCCCCCCCCCCCCHHHHHCCHHHHHCC
Q ss_conf 8668678988897798788667946983000300231446644454-441001013577311266001444160233101
Q gi|254780617|r 78 SYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGPIKC-EQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSL 156 (509)
Q Consensus 78 ~~~gI~~G~~V~~tg~~~~vpvG~~lLGRVvD~lG~PlDg~g~i~~-~~~~~i~~~~p~~~~R~~i~~~l~TGI~~ID~l 156 (509)
T Consensus 81 ~~~gi~~G~~V~~tg-~l~v~vg~~lLGRVvD~lG~PlDgkgpl~~~~~~~pi~~~~p~~~~R~~i~epL~TGIkaID~l 159 (450)
T PRK06002 81 PRIPAGLGAAVFRKG-PLRIRPDPSWKGRVINALGEPIDGKGPLAPGTRPMSIDATAPPAMRRARVDTPLRTGVRVIDIF 159 (450)
T ss_pred CCCCCCCCCEEEECC-CEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHH
T ss_conf 866688999898479-8044468000478737888657899998877613515689968121278887663103133421
Q ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECC
Q ss_conf 11156833655247788611589999999886302466787606999951677678999998511467421158997288
Q gi|254780617|r 157 IPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASA 236 (509)
Q Consensus 157 ~pigrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tvvv~a~a 236 (509)
T Consensus 160 ~pigrGQR~gIfgg~GvGKTtLl-~~i~~~~~---------~d~vV~~lIGeRgrEv~ef~e~~l~-~~l~~svvV~ats 228 (450)
T PRK06002 160 TPLCAGQRIGIFAGSGVGKSTLL-AMLARADA---------FDTVVVALVGERGREVREFLEDTLA-DHLSKAVAVVATG 228 (450)
T ss_pred CCCCCCCEEEECCCCCCCHHHHH-HHHHHHCC---------CCEEEEEEEEEEHHHHHHHHHHHHH-CCCCEEEEEEECC
T ss_conf 46014877774268999875999-99986258---------9879999864748999999998764-2200059997058
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 78889999988766666675420468847996164789999987545303787543337520012467888875045445
Q gi|254780617|r 237 SDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDAL 316 (509)
Q Consensus 237 ~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~~~~~~~ 316 (509)
T Consensus 229 d~~p~~r~~a~~~a~aiAEyfrd~G~~VLli~DslTr~A~A~REisl~~gepP~r~gYp~~vf~~l~~LlERag~~~~-- 306 (450)
T PRK06002 229 DESPMMRRLAPKTATAIAEYFRDRGENVLLIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELPRLLERAGPGAE-- 306 (450)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC--
T ss_conf 898288765565544379999967996799982617888899999987589997567783277660688876225777--
Q ss_pred CCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 88735675310036766443114668854061699615012210266543344412203434389887755678887998
Q gi|254780617|r 317 GAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQ 396 (509)
Q Consensus 317 g~GSiT~~~~v~~~~~D~~~~i~~~~~si~DG~i~l~~~l~~~g~~Paid~~~S~SRv~~~~~~~~~~~~a~~lr~~laq 396 (509)
T Consensus 307 ~~GSITal~~V~~~~dD~~~pI~d~~~silDGhIvLsr~la~~G~~PAIDv~~SvSRv~~~~~~~~~~~~a~~~r~~la~ 386 (450)
T PRK06002 307 GGGSITGIFSVLVDGDDHNDPVADSIRGTLDGHIVLDRAIAEQGRYPAVDPLASISRLAKHVWTPEQRKLVRRLKSMIAR 386 (450)
T ss_pred CCCCEEEEEEEEECCCCCCCCHHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 87306888888713887677578878677354999848898679999728873420177122429999999999999997
Q ss_pred HHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 87678798763---38998999999999999999669998874889999999998669806
Q gi|254780617|r 397 YREMSSFSKFS---SDLDSSTQKFLSKGERLTELLKQPQFSPLAMEEQVVMIFAGISGCLD 454 (509)
Q Consensus 397 y~Ele~f~~fg---sdlD~~t~~~l~rg~ri~e~LkQ~~~~p~~~~~qv~~l~a~~~G~ld 454 (509)
T Consensus 387 y~e~~dli~~g~y~~g~d~~~d~ai~~~~~i~~fL~Q~~~ep~s-~d~~~~l~~~~~g~~~ 446 (450)
T PRK06002 387 FEETRDLRLMGGYQPGADPELDQAVDLVPRIYEALQQSPGDPPS-DDPFADLAAALKGAAQ 446 (450)
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC-HHHHHHHHHHHHHHHH
T ss_conf 77789999975946799999999998269999983899899987-7899999998532130