HHsearch alignment for GI: 254780617 and conserved domain: PRK06067
>PRK06067 flagellar accessory protein FlaH; Validated.
Probab=98.42 E-value=4.3e-06 Score=63.29 Aligned_cols=190 Identities=19% Similarity=0.136 Sum_probs=102.6
Q ss_pred HHHHHCCHHHHHCCC--CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHH-
Q ss_conf 014441602331011--11568336552477886115899999998863024667876069999516776789999985-
Q gi|254780617|r 143 CEPLSTGIKAIDSLI--PIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKA- 219 (509)
Q Consensus 143 ~~~l~TGI~~ID~l~--pigrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~- 219 (509)
T Consensus 11 ~e~i~tGi~~lD~~l~GG~p~g~~~li~G~~G~GKt~~~~~f~~~~~~~--------g~~~~~~~~ee~~~~~~~~~~~~ 82 (241)
T PRK06067 11 KEIISTGNEEIDRKLGGGIPFGSLILIEGENDTGKSVLSQQFVWGALNQ--------GKRGLAITTENTSKSYLKQMESL 82 (241)
T ss_pred CCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC--------CCEEEEEEECCCHHHHHHHHHHC
T ss_conf 4525668755786506997799089998079988799999999999867--------98299999428999999999983
Q ss_pred ------HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf ------11467421158997288788899999887666666754204688479961647899999875453037875433
Q gi|254780617|r 220 ------LEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREA 293 (509)
Q Consensus 220 ------l~~~~~~~~tvvv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~g 293 (509)
T Consensus 83 g~dl~~~~~~G~L~i~~~~~~~~~--~~~~-~~~~ll~~l~~~v~~~~~~~-vVIDSls~l~~~~~~~------------ 146 (241)
T PRK06067 83 KLDISDFFIWGYLRIFPLNTEGFE--WNSE-LAEKLLDLIIEFIKRRREEV-IIIDSLTIFATYASED------------ 146 (241)
T ss_pred CCCHHHHHHCCCCEEEECCCCCCC--CCHH-HHHHHHHHHHHHHHHHCCCE-EEECCHHHHHCCCCHH------------
T ss_conf 998599986697057832411134--2155-68999999999999719989-9992801754138889------------
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCC
Q ss_conf 3752001246788887504544588735675310036766443114668854061699615012210266543344
Q gi|254780617|r 294 YPGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGL 369 (509)
Q Consensus 294 yp~~vf~~~s~l~ERa~~~~~~~g~GSiT~~~~v~~~~~D~~~~i~~~~~si~DG~i~l~~~l~~~g~~Paid~~~ 369 (509)
T Consensus 147 ---~~~----~~l~~l~~l~~~---g-~tvllt~~~~--~~~~~~~~~i~~vaD~vI~Lr~~~~~g~~~R~L~V~K 209 (241)
T PRK06067 147 ---DVL----NFFTECKNLCDN---G-KTILITLHPY--AFSEDTLVRIRSICDVHLKLRKEQVGDRYVKVLEVVK 209 (241)
T ss_pred ---HHH----HHHHHHHHHHHC---C-CEEEEEECCC--CCCCCCCCCEEEEEEEEEEEEEEEECCEEEEEEEEEE
T ss_conf ---999----999999999968---9-8899990567--6476643124899899999587843999999999999