HHsearch alignment for GI: 254780617 and conserved domain: PRK06067

>PRK06067 flagellar accessory protein FlaH; Validated.
Probab=98.42  E-value=4.3e-06  Score=63.29  Aligned_cols=190  Identities=19%  Similarity=0.136  Sum_probs=102.6

Q ss_pred             HHHHHCCHHHHHCCC--CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHH-
Q ss_conf             014441602331011--11568336552477886115899999998863024667876069999516776789999985-
Q gi|254780617|r  143 CEPLSTGIKAIDSLI--PIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKA-  219 (509)
Q Consensus       143 ~~~l~TGI~~ID~l~--pigrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~-  219 (509)
T Consensus        11 ~e~i~tGi~~lD~~l~GG~p~g~~~li~G~~G~GKt~~~~~f~~~~~~~--------g~~~~~~~~ee~~~~~~~~~~~~   82 (241)
T PRK06067         11 KEIISTGNEEIDRKLGGGIPFGSLILIEGENDTGKSVLSQQFVWGALNQ--------GKRGLAITTENTSKSYLKQMESL   82 (241)
T ss_pred             CCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC--------CCEEEEEEECCCHHHHHHHHHHC
T ss_conf             4525668755786506997799089998079988799999999999867--------98299999428999999999983


Q ss_pred             ------HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             ------11467421158997288788899999887666666754204688479961647899999875453037875433
Q gi|254780617|r  220 ------LEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREA  293 (509)
Q Consensus       220 ------l~~~~~~~~tvvv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~g  293 (509)
T Consensus        83 g~dl~~~~~~G~L~i~~~~~~~~~--~~~~-~~~~ll~~l~~~v~~~~~~~-vVIDSls~l~~~~~~~------------  146 (241)
T PRK06067         83 KLDISDFFIWGYLRIFPLNTEGFE--WNSE-LAEKLLDLIIEFIKRRREEV-IIIDSLTIFATYASED------------  146 (241)
T ss_pred             CCCHHHHHHCCCCEEEECCCCCCC--CCHH-HHHHHHHHHHHHHHHHCCCE-EEECCHHHHHCCCCHH------------
T ss_conf             998599986697057832411134--2155-68999999999999719989-9992801754138889------------


Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCC
Q ss_conf             3752001246788887504544588735675310036766443114668854061699615012210266543344
Q gi|254780617|r  294 YPGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGL  369 (509)
Q Consensus       294 yp~~vf~~~s~l~ERa~~~~~~~g~GSiT~~~~v~~~~~D~~~~i~~~~~si~DG~i~l~~~l~~~g~~Paid~~~  369 (509)
T Consensus       147 ---~~~----~~l~~l~~l~~~---g-~tvllt~~~~--~~~~~~~~~i~~vaD~vI~Lr~~~~~g~~~R~L~V~K  209 (241)
T PRK06067        147 ---DVL----NFFTECKNLCDN---G-KTILITLHPY--AFSEDTLVRIRSICDVHLKLRKEQVGDRYVKVLEVVK  209 (241)
T ss_pred             ---HHH----HHHHHHHHHHHC---C-CEEEEEECCC--CCCCCCCCCEEEEEEEEEEEEEEEECCEEEEEEEEEE
T ss_conf             ---999----999999999968---9-8899990567--6476643124899899999587843999999999999