HHsearch alignment for GI: 254780617 and conserved domain: PRK06936
>PRK06936 type III secretion system ATPase; Provisional.
Probab=100.00 E-value=0 Score=922.66 Aligned_cols=430 Identities=27% Similarity=0.402 Sum_probs=407.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCEEEEECCCCCCCCCEEEECC-----CEEEEEEEECCCEEEEEEEC
Q ss_conf 8889999999999842455542010358999827589997588877374799579-----81899992059859999805
Q gi|254780617|r 3 IHAAEISDILRKRIKDFGNDSEFSEIGRVLSIGDGIARVYGLNNIRAGEMVQFSH-----GVYGMALNLEVDNVGVVILG 77 (509)
Q Consensus 3 ~~~~eis~~l~~~i~~~~~~~~~~~~G~V~~V~~giv~v~GL~~a~~GElv~~~~-----g~~G~Vi~l~~d~v~i~~l~ 77 (509)
T Consensus 2 ~~~~~~~~~l~~~~~~~~~---~~~~Grv~~v~G~~iea~~-~~~~iG~~c~i~~~~~~~~~~aEVVgf~~~~~~l~p~~ 77 (439)
T PRK06936 2 LSLDYIPHHLRHAIVGSRL---IQIRGRVTQVTGTILKAVV-PGVRIGELCYLRNPDNSLSLQAEVIGFAQHQALLTPLG 77 (439)
T ss_pred CCHHHHHHHHHHHHHCCCE---EEEEEEEEEEEEEEEEEEE-CCCCCCCEEEEECCCCCCEEEEEEEEEECCEEEEEECC
T ss_conf 4277889999999826985---7788799999965899984-79997886899828998348999998838989999677
Q ss_pred CCCCCCCCCEEEECCCEEEEECCHHHHHCCCCHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHCCHHHHHCCC
Q ss_conf 86686789888977987886679469830003002314466444544410010135773112660014441602331011
Q gi|254780617|r 78 SYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLI 157 (509)
Q Consensus 78 ~~~gI~~G~~V~~tg~~~~vpvG~~lLGRVvD~lG~PlDg~g~i~~~~~~~i~~~~p~~~~R~~i~~~l~TGI~~ID~l~ 157 (509)
T Consensus 78 ~~~Gi~~G~~V~~~g~~~~vpvG~~lLGRV~D~~G~PlDg~~~~~~~~~~pi~~~~p~p~~R~~i~epl~TGIraID~ll 157 (439)
T PRK06936 78 EMYGISSNTEVSPTGTMHQVGVGEHLLGRVLDGLGQPFDGGHPPEPAAWYPVYADAPAPMSRRLIETPLSLGVRVIDGLL 157 (439)
T ss_pred CCCCCCCCCEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCHHCCCCCCCCCCCCEEEECCC
T ss_conf 86678999999978998677757042288888888755899999878762045889784202687874226855552468
Q ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCC
Q ss_conf 11568336552477886115899999998863024667876069999516776789999985114674211589972887
Q gi|254780617|r 158 PIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASAS 237 (509)
Q Consensus 158 pigrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tvvv~a~a~ 237 (509)
T Consensus 158 t~g~GQR~gIfagsGvGKs~Ll-~~i~r~~~---------adv~V~alIGERgrEv~efie~~l~~~gl~rsvvV~atsd 227 (439)
T PRK06936 158 TCGEGQRMGIFAAAGGGKSTLL-ASLIRSAE---------VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSD 227 (439)
T ss_pred CHHCCCEEECCCCCCCCHHHHH-HHHHHHHC---------CCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 6310570102369999889999-99976432---------6957999807308999999998641254310699961898
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 88899999887666666754204688479961647899999875453037875433375200124678888750454458
Q gi|254780617|r 238 DPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALG 317 (509)
Q Consensus 238 ~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~~~~~~~g 317 (509)
T Consensus 228 ~p~~~R~~aa~~a~aiAEyFrd~G~~VLl~~DslTR~A~A~REI~l~~gepP~~~GYppsvf~~l~~l~ERag~~~---- 303 (439)
T PRK06936 228 RPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSD---- 303 (439)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCC----
T ss_conf 9989999999887788999985898489993567899999989998668999876779509988788887255899----
Q ss_pred CCCEEEEEEEECCCCCCCCCHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 87356753100367664431146688540616996150122102665433444122034343898877556788879988
Q gi|254780617|r 318 AGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQY 397 (509)
Q Consensus 318 ~GSiT~~~~v~~~~~D~~~~i~~~~~si~DG~i~l~~~l~~~g~~Paid~~~S~SRv~~~~~~~~~~~~a~~lr~~laqy 397 (509)
T Consensus 304 ~GSITa~~tVl~~gdD~~dPi~d~~~silDGhivLsR~la~~g~yPAIDvl~S~SRvm~~v~~~~h~~~a~~~r~~la~y 383 (439)
T PRK06936 304 KGSITALYTVLVEGDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLASASRVMNQIVSKEHKTWAGRLRELLAKY 383 (439)
T ss_pred CCCEEEEEEEEECCCCCCCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 97457654455048877777156566662606998487886699998187404544452122699999999999999989
Q ss_pred HHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 7678798763---3899899999999999999966999887488999999999866
Q gi|254780617|r 398 REMSSFSKFS---SDLDSSTQKFLSKGERLTELLKQPQFSPLAMEEQVVMIFAGIS 450 (509)
Q Consensus 398 ~Ele~f~~fg---sdlD~~t~~~l~rg~ri~e~LkQ~~~~p~~~~~qv~~l~a~~~ 450 (509)
T Consensus 384 ~e~edli~iG~y~~G~d~~~D~ai~~~~~i~~FL~Q~~~e~~~~~et~~~L~~l~~ 439 (439)
T PRK06936 384 EEVELLLQIGEYQKGQDKEADQAIERIGAIRGFLRQGTHELSHFNETLNLLETLTQ 439 (439)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 99999998548657999889999986899999808999998499999999999749