HHsearch alignment for GI: 254780617 and conserved domain: PRK08472

>PRK08472 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00  E-value=0  Score=922.73  Aligned_cols=420  Identities=29%  Similarity=0.446  Sum_probs=394.9

Q ss_pred             HHHHH-HCCCCCCCEEEEEEEEEEECCEEEEECCCCCCCCCEEEEC---CC--EEEEEEEECCCEEEEEEECCCCCCCCC
Q ss_conf             99998-4245554201035899982758999758887737479957---98--189999205985999980586686789
Q gi|254780617|r   12 LRKRI-KDFGNDSEFSEIGRVLSIGDGIARVYGLNNIRAGEMVQFS---HG--VYGMALNLEVDNVGVVILGSYKEISEG   85 (509)
Q Consensus        12 l~~~i-~~~~~~~~~~~~G~V~~V~~giv~v~GL~~a~~GElv~~~---~g--~~G~Vi~l~~d~v~i~~l~~~~gI~~G   85 (509)
T Consensus         6 ~~~~~~~~~~~s~~---yG~V~~V~G~li~v~G~~-~~iGe~~~I~~~~~g~~~~geVvg~~~~~v~l~~~~~~~Gi~~G   81 (435)
T PRK08472          6 LKNKLNQHFSLSPR---FGSITKISANIIEARGLK-PSVGDIVKIVEENDGKECLGMVVVIEKEQFGISPFSFIEGFKIG   81 (435)
T ss_pred             HHHHHHHCCCCCCC---CCEEEEEECEEEEEEECC-CCCCCEEEEEECCCCCEEEEEEEEEECCEEEEEECCCCCCCCCC
T ss_conf             99998735676677---868999957399999458-87678799997699967789999885998999983688789999


Q ss_pred             CEEEECCCEEEEECCHHHHHCCCCHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHCCHHHHHCCCCCCCCCEE
Q ss_conf             88897798788667946983000300231446644454441001013577311266001444160233101111568336
Q gi|254780617|r   86 DIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRE  165 (509)
Q Consensus        86 ~~V~~tg~~~~vpvG~~lLGRVvD~lG~PlDg~g~i~~~~~~~i~~~~p~~~~R~~i~~~l~TGI~~ID~l~pigrGQR~  165 (509)
T Consensus        82 ~~V~~tg~~~~vpvg~~lLGRVvD~lG~PlDg~g~i~~~~~~pi~~~~~~p~~R~~i~epl~TGIraID~l~pigrGQR~  161 (435)
T PRK08472         82 DKVFISDEGLNIPVGRNLLGRVVDPLGRPIDGKGAIDYTEYAPIMRAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKL  161 (435)
T ss_pred             CEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCCCCEE
T ss_conf             99998999737875834027887778864589999887623011478988045168887411585577432662477665


Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHH
Q ss_conf             55247788611589999999886302466787606999951677678999998511467421158997288788899999
Q gi|254780617|r  166 LIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPAPMQLL  245 (509)
Q Consensus       166 ~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tvvv~a~a~~~~~~r~~  245 (509)
T Consensus       162 gIf~g~GvGKt~Ll-~~i~~~~~---------~dv~V~~lIGeR~rEv~efie~~~-~~~l~~tvvvvatsd~p~~~r~~  230 (435)
T PRK08472        162 GIFAGSGVGKSTLM-GMIVKGCL---------APIKVVALIGERGREIPEFIEKNL-GGDLSNTVIVVATSDDSPLMRKY  230 (435)
T ss_pred             ECCCCCCCCCCHHH-HHHHHHHC---------CCEEEEEEECEEHHHHHHHHHHHH-HHCCCCEEEEEECCCCCHHHHHH
T ss_conf             12358999833578-88877615---------998899761312278999999874-11322259998468899899988


Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf             88766666675420468847996164789999987545303787543337520012467888875045445887356753
Q gi|254780617|r  246 APFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALP  325 (509)
Q Consensus       246 ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~~~~~~~g~GSiT~~~  325 (509)
T Consensus       231 a~~~a~aiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gYp~~vf~~l~~l~ERag~~---~~~GSIT~i~  307 (435)
T PRK08472        231 GAFCAMSVAEYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGKE---EGKGSITAFF  307 (435)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCC---CCCCCEEEEE
T ss_conf             8889999999998679848998436278899999999865899975563835776657888864258---8985148887


Q ss_pred             EEECCCCCCCCCHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             10036766443114668854061699615012210266543344412203434389887755678887998876787987
Q gi|254780617|r  326 VIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYREMSSFSK  405 (509)
Q Consensus       326 ~v~~~~~D~~~~i~~~~~si~DG~i~l~~~l~~~g~~Paid~~~S~SRv~~~~~~~~~~~~a~~lr~~laqy~Ele~f~~  405 (509)
T Consensus       308 ~v~~~gdD~~~pi~d~~~si~DG~ivLsr~La~~g~yPAIdvl~S~SR~~~~~~~~~h~~~a~~~r~~~a~y~e~e~li~  387 (435)
T PRK08472        308 TVLVEGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINILNSASRVMKDIISPEHNLWARKFKRLYSLLKENEVLIR  387 (435)
T ss_pred             EEEECCCCCCCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             78504887677745555454060799978798669999848631454414001369999999999999999898999999


Q ss_pred             HHC---CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             633---89989999999999999996699988748899999999986
Q gi|254780617|r  406 FSS---DLDSSTQKFLSKGERLTELLKQPQFSPLAMEEQVVMIFAGI  449 (509)
Q Consensus       406 fgs---dlD~~t~~~l~rg~ri~e~LkQ~~~~p~~~~~qv~~l~a~~  449 (509)
T Consensus       388 ig~y~~g~d~~~d~ai~~~~~i~~fL~Q~~~e~~~~eet~~~l~~il  434 (435)
T PRK08472        388 IGAYQKGSDKELDEAISKKELMEQFLKQNENELFPFEQSFELLEEIL  434 (435)
T ss_pred             HHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             64865799989999998479999977999999979999999999973