HHsearch alignment for GI: 254780617 and conserved domain: PRK09183
>PRK09183 transposase/IS protein; Provisional.
Probab=91.23 E-value=0.21 Score=29.21 Aligned_cols=51 Identities=20% Similarity=0.278 Sum_probs=33.5
Q ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 115683365524778861158999999988630246678760699995167767899999851146
Q gi|254780617|r 158 PIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDR 223 (509)
Q Consensus 158 pigrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~ 223 (509)
T Consensus 97 fi~~~~Nvil~G~~GtGKThLA~-Alg~~A~~~G-----~~v--~f~~-------~~~L~~~L~~a 147 (258)
T PRK09183 97 FIERNENIVLLGPSGVGKTHLAI-ALGYEAVRAG-----IKV--RFTT-------AADLLLQLSTA 147 (258)
T ss_pred HHHCCCCEEEECCCCCCHHHHHH-HHHHHHHHCC-----CEE--EEEE-------HHHHHHHHHHH
T ss_conf 66558867998999986899999-9999999879-----939--9978-------99999999999