HHsearch alignment for GI: 254780617 and conserved domain: PRK09376
>PRK09376 rho transcription termination factor Rho; Provisional.
Probab=100.00 E-value=5.6e-33 Score=258.45 Aligned_cols=293 Identities=20% Similarity=0.231 Sum_probs=214.6
Q ss_pred CCCCCCCEEEECCCEEEEECCHHH--HHCCCCHHHCCC---------CCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHC
Q ss_conf 686789888977987886679469--830003002314---------466444544410010135773112660014441
Q gi|254780617|r 80 KEISEGDIVKRTGRIVDVPVGLEL--LGRVVDALGNPI---------DGKGPIKCEQRSCTEADAPGIIQRQSVCEPLST 148 (509)
Q Consensus 80 ~gI~~G~~V~~tg~~~~vpvG~~l--LGRVvD~lG~Pl---------Dg~g~i~~~~~~~i~~~~p~~~~R~~i~~~l~T 148 (509)
T Consensus 90 f~LR~GD~V~G~vR~p--ke~Ery~aLl~V~~VNg~~pe~~~~r~~F~~LTPi~P~erl~LE~------------~~~~~ 155 (416)
T PRK09376 90 FNLRTGDTVEGKIRPP--KEGERYFALLKVETVNGEDPEKARNRILFENLTPLYPNERLKLET------------GTEDL 155 (416)
T ss_pred HCCCCCCEEEEEEECC--CCCCCCCCEEEEEECCCCCHHHHCCCCCCCCCCCCCCHHHHCCCC------------CCCCC
T ss_conf 0998888899988689--888877433776322893989965735401487779722311456------------88765
Q ss_pred CHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCE
Q ss_conf 60233101111568336552477886115899999998863024667876069999516776789999985114674211
Q gi|254780617|r 149 GIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSY 228 (509)
Q Consensus 149 GI~~ID~l~pigrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~ 228 (509)
T Consensus 156 s~RiiDL~aPIGkGQRgLIVAPPkaGKT~lLq-~IA~-----aI~~N~Pe~~liVLLIDERPEEVTdm~r~v~~------ 223 (416)
T PRK09376 156 STRVIDLVAPIGKGQRGLIVAPPKAGKTVLLQ-NIAN-----SITTNHPEVHLIVLLIDERPEEVTDMQRSVKG------ 223 (416)
T ss_pred CCCCEEEECCCCCCCCCEEECCCCCCHHHHHH-HHHH-----HHHHCCCCEEEEEEEECCCCHHHHHHHHHCCE------
T ss_conf 40021100541358500375699875479999-9999-----99856997199999904893477787750461------
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 58997288788899999887666666754204688479961647899999875453037875433375200124678888
Q gi|254780617|r 229 SIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLER 308 (509)
Q Consensus 229 tvvv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ER 308 (509)
T Consensus 224 -eV~aStfD~~~~~H~~vae~~lerAkRlvE~G~DVvillDSiTRLaRAyN~~~~~sGr~ls-GG~D~~Al~~PKrfFGA 301 (416)
T PRK09376 224 -EVVASTFDEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLS-GGVDANALHRPKRFFGA 301 (416)
T ss_pred -EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCCCCCC-CCCCHHHHCCCHHHHHH
T ss_conf -8999779998789999999999999999876997899973157888886234699877544-76577776055676410
Q ss_pred HHHCCCCCCCCCEEEEEEEECC-CCCCCCCHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHH
Q ss_conf 7504544588735675310036-766443114668854061699615012210266543344412203434389887755
Q gi|254780617|r 309 AAKMSDALGAGSLTALPVIETQ-VNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVS 387 (509)
Q Consensus 309 a~~~~~~~g~GSiT~~~~v~~~-~~D~~~~i~~~~~si~DG~i~l~~~l~~~g~~Paid~~~S~SRv~~~~~~~~~~~~a 387 (509)
T Consensus 302 AR---nie~GGSLTIiaTaLveTgSrMDdvIfeEfkgTgNmEl~Ldr~la~~RifPAIdi~~SgTRkEelLl~~~e~~~~ 378 (416)
T PRK09376 302 AR---NIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLAEKRIFPAIDINRSGTRKEELLLSPEELQKV 378 (416)
T ss_pred HC---CCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEECHHHHHCCCCCCCCCCCCCCCHHHHCCCHHHHHHH
T ss_conf 02---677675177877777526862538999985157845999876677578864013335777257653799999999
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 6788879988767879
Q gi|254780617|r 388 GAVKGELAQYREMSSF 403 (509)
Q Consensus 388 ~~lr~~laqy~Ele~f 403 (509)
T Consensus 379 ~~lRr~l~~~~~~ea~ 394 (416)
T PRK09376 379 WILRKILSPMDEVEAM 394 (416)
T ss_pred HHHHHHHHCCCHHHHH
T ss_conf 9999987159979999