HHsearch alignment for GI: 254780617 and conserved domain: PRK12678
>PRK12678 transcription termination factor Rho; Provisional.
Probab=99.97 E-value=3.2e-29 Score=231.15 Aligned_cols=241 Identities=17% Similarity=0.242 Sum_probs=191.3
Q ss_pred HHHCCHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 44416023310111156833655247788611589999999886302466787606999951677678999998511467
Q gi|254780617|r 145 PLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRG 224 (509)
Q Consensus 145 ~l~TGI~~ID~l~pigrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~ 224 (509)
T Consensus 394 ~~~~t~RiiDl~~PiGkGQRgLIVapPkaGKT~ll~-~ia~-----ai~~N~pe~~l~vlLiDERPEEVTdm~r~v~g-- 465 (667)
T PRK12678 394 PNKLTTRVIDLIMPIGKGQRGLIVSPPKAGKTTILQ-DIAN-----AITTNNPECHLMVVLVDERPEEVTDMQRSVKG-- 465 (667)
T ss_pred CCCCCHHHHEEECCCCCCCEEEEECCCCCCCHHHHH-HHHH-----HHHHCCCCEEEEEEECCCCCHHHHHHHHCCCE--
T ss_conf 765322230111356788454675799787259999-9999-----99856997289999737885156676640460--
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf 42115899728878889999988766666675420468847996164789999987545303787543337520012467
Q gi|254780617|r 225 ALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSR 304 (509)
Q Consensus 225 ~~~~tvvv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~ 304 (509)
T Consensus 466 -----eViaStfD~~~~~H~~vael~iErAkRlvE~g~DVvillDSiTRLaRAyN~~~p~sGr~ls-GGvD~~Al~~PKr 539 (667)
T PRK12678 466 -----EVIASTFDRPPSDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRILS-GGVDSTALYPPKR 539 (667)
T ss_pred -----EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHCHHH
T ss_conf -----6998668898888999999999999998756997799964066888876044699877346-7648676601077
Q ss_pred HHHHHHHCCCCCCCCCEEEEEEEECC-CCCCCCCHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCCCHHHCCCCCCCHHH
Q ss_conf 88887504544588735675310036-76644311466885406169961501221026654334441220343438988
Q gi|254780617|r 305 LLERAAKMSDALGAGSLTALPVIETQ-VNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAM 383 (509)
Q Consensus 305 l~ERa~~~~~~~g~GSiT~~~~v~~~-~~D~~~~i~~~~~si~DG~i~l~~~l~~~g~~Paid~~~S~SRv~~~~~~~~~ 383 (509)
T Consensus 540 ffGAARn---ie~GGSLTIlaTaLveTGSrmDevIfeEFKGTGNmEl~LdR~la~~RifPAidi~~SgTR~eelLl~~~e 616 (667)
T PRK12678 540 FFGAARN---IENGGSLTIIATALVETGSTMDTVIFEEFKGTGNAELKLDRKIADKRVFPAVDVNPSGTRKEELLLSPDE 616 (667)
T ss_pred HHHHHHC---CCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECHHHHHCCCCCCCCCCCCCCCHHHHCCCHHH
T ss_conf 7677752---4767447675445530465067889988537664288862335645565311344577506765379999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 7755678887998876787
Q gi|254780617|r 384 KQVSGAVKGELAQYREMSS 402 (509)
Q Consensus 384 ~~~a~~lr~~laqy~Ele~ 402 (509)
T Consensus 617 ~~~~~~lRr~l~~~~~~~a 635 (667)
T PRK12678 617 LAIVHKLRRVLSGLDSQQA 635 (667)
T ss_pred HHHHHHHHHHHHCCCHHHH
T ss_conf 9999999998725998999