HHsearch alignment for GI: 254780617 and conserved domain: PRK13343
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional.
Probab=100.00 E-value=0 Score=1216.67 Aligned_cols=501 Identities=54% Similarity=0.889 Sum_probs=496.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCEEEEECCCCCCCCCEEEECCCEEEEEEEECCCEEEEEEECCCC
Q ss_conf 98888999999999984245554201035899982758999758887737479957981899992059859999805866
Q gi|254780617|r 1 MDIHAAEISDILRKRIKDFGNDSEFSEIGRVLSIGDGIARVYGLNNIRAGEMVQFSHGVYGMALNLEVDNVGVVILGSYK 80 (509)
Q Consensus 1 m~~~~~eis~~l~~~i~~~~~~~~~~~~G~V~~V~~giv~v~GL~~a~~GElv~~~~g~~G~Vi~l~~d~v~i~~l~~~~ 80 (509)
T Consensus 1 m~~~~~~~~~~~~~~i~~~~~~~~~~~~G~V~~v~dgi~~v~GL~~~~~gel~~f~~~~~g~v~~l~~d~v~~v~lg~~~ 80 (502)
T PRK13343 1 MASNSDSWLARIRQRIARYELAPDAQEIGRVESVGDGIAFVSGLPDAALDELLRFDGGSRGFAFNLEEELVGAVLLDDTA 80 (502)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCEEEEECCCCCCCCCEEEECCCCEEEEEECCCCEEEEEEECCCC
T ss_conf 99898999999999996268877236767999982867999267414238889978997799994149839999955987
Q ss_pred CCCCCCEEEECCCEEEEECCHHHHHCCCCHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHCCHHHHHCCCCCC
Q ss_conf 86789888977987886679469830003002314466444544410010135773112660014441602331011115
Q gi|254780617|r 81 EISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIG 160 (509)
Q Consensus 81 gI~~G~~V~~tg~~~~vpvG~~lLGRVvD~lG~PlDg~g~i~~~~~~~i~~~~p~~~~R~~i~~~l~TGI~~ID~l~pig 160 (509)
T Consensus 81 ~i~~G~~V~~TG~~l~VpVG~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~ap~~~~R~~v~epL~TGIkaID~l~pig 160 (502)
T PRK13343 81 DLRAGTEVKRTGRVLEVPVGDALLGRVIDPLGRPLDGGGPLEATATRPIERPAPAIIERDSVTEPLQTGLKVIDALIPIG 160 (502)
T ss_pred CCCCCCEEEECCCCEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCEEEEECCCCCC
T ss_conf 88999999968995488757310258737883443899998876432146889783321666754312606740556646
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCH
Q ss_conf 68336552477886115899999998863024667876069999516776789999985114674211589972887888
Q gi|254780617|r 161 RGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPA 240 (509)
Q Consensus 161 rGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tvvv~a~a~~~~ 240 (509)
T Consensus 161 rGQR~gIfg~~GvGKT~L~~~~I~nq~~~--------~vi~Vyv~IGer~~ev~~~v~~l~~~gal~~tvvV~ata~~p~ 232 (502)
T PRK13343 161 RGQRELIIGDRQTGKTAIAIDAIINQKDK--------DVICVYVAIGQKASTVARVIDTLREHGALEYTTVVVAEASDPP 232 (502)
T ss_pred CCCEEECCCCCCCCCCHHHHHHHHHHCCC--------CCEEEEEEEEEEEHHHHHHHHHHHHCCCCHHHEEEECCCCCCH
T ss_conf 78577513678888048999999972578--------8749999960451659899999876485131224523778986
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999887666666754204688479961647899999875453037875433375200124678888750454458873
Q gi|254780617|r 241 PMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGS 320 (509)
Q Consensus 241 ~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~~~~~~~g~GS 320 (509)
T Consensus 233 ~~r~~ap~~a~aiAEyFrd~GkdVLlv~Ddltr~A~A~REislllgrpPgr~gYPg~vf~~~srLlERa~~~~~~~ggGS 312 (502)
T PRK13343 233 GLQYLAPFAGCAIAEYFRDRGRDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLERATKLSPELGGGS 312 (502)
T ss_pred HHHHHHHHHHCCHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 88755566520257999966996799995668999999899997489987667694588772689988875268899846
Q ss_pred EEEEEEEECCCCCCCCCHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56753100367664431146688540616996150122102665433444122034343898877556788879988767
Q gi|254780617|r 321 LTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYREM 400 (509)
Q Consensus 321 iT~~~~v~~~~~D~~~~i~~~~~si~DG~i~l~~~l~~~g~~Paid~~~S~SRv~~~~~~~~~~~~a~~lr~~laqy~El 400 (509)
T Consensus 313 ITalp~V~~~~dDis~pIp~~v~sItDGqIvLsr~La~~G~~PAIdv~~SvSRVg~~aq~~~~k~va~~lr~~laqy~el 392 (502)
T PRK13343 313 LTALPIIETQAGDLAAYIPTNLISITDGQIFLDSDLFASGQRPAVDVGKSVSRVGGKAQHPAIRKESGRLRLDYAQFLEL 392 (502)
T ss_pred EEEEEEEECCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 64516997248875663456565222616997245322683785178776135685778899999999999999989999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87987633899899999999999999966999887488999999999866980667989999999999999974159999
Q gi|254780617|r 401 SSFSKFSSDLDSSTQKFLSKGERLTELLKQPQFSPLAMEEQVVMIFAGISGCLDEVAVSQVRKFETNFLSHMRVSSQDIL 480 (509)
Q Consensus 401 e~f~~fgsdlD~~t~~~l~rg~ri~e~LkQ~~~~p~~~~~qv~~l~a~~~G~ld~i~v~~I~~fe~~l~~~l~~~~~ei~ 480 (509)
T Consensus 393 ~~f~~fg~~ld~~~~~~l~rg~r~~~~lkQ~~~~p~~~~~qv~~l~a~~~g~~d~~~~~~i~~~~~~~~~~~~~~~~~~~ 472 (502)
T PRK13343 393 EAFTRFGARLDAGTRKQITRGRRLRELLKQPRFSPLSVEEQIALLYALNNGLLDDVPLDNIPPFEEELLAKLDARPSALL 472 (502)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf 99998743589999999999999999857888999789999998877448873666889999999999999986669999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 98873279898999999999999985159
Q gi|254780617|r 481 EDIRKQKVLTDDIRSKLINEIKVFLEDFN 509 (509)
Q Consensus 481 ~~I~~~~~l~de~~~~L~~~i~~~~~~Fs 509 (509)
T Consensus 473 ~~i~~~~~l~~~~~~~l~~~~~~~~~~~~ 501 (502)
T PRK13343 473 FALAPTELLDDADREALLEALKEALETFA 501 (502)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 99974279899999999999999998616