HHsearch alignment for GI: 254780617 and conserved domain: TIGR00767
>TIGR00767 rho transcription termination factor Rho; InterPro: IPR004665 Members of this family have a related but highly variable long, highly charged insert near the amino end. The proteins differ in the specificity of RNA binding.; GO: 0003715 transcription termination factor activity, 0005524 ATP binding, 0006353 transcription termination.
Probab=99.73 E-value=2.2e-16 Score=138.07 Aligned_cols=303 Identities=18% Similarity=0.237 Sum_probs=217.9
Q ss_pred CCCCCCCCCEEEECCCEEEEECCHHH--HHCCCCHHHCCCCCCCCCCCCCCCHHCCCCC-CCCCCCCC----HHHHHCCH
Q ss_conf 86686789888977987886679469--8300030023144664445444100101357-73112660----01444160
Q gi|254780617|r 78 SYKEISEGDIVKRTGRIVDVPVGLEL--LGRVVDALGNPIDGKGPIKCEQRSCTEADAP-GIIQRQSV----CEPLSTGI 150 (509)
Q Consensus 78 ~~~gI~~G~~V~~tg~~~~vpvG~~l--LGRVvD~lG~PlDg~g~i~~~~~~~i~~~~p-~~~~R~~i----~~~l~TGI 150 (509)
T Consensus 89 ~~~~~~~gd~~~g~~~~--p~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~pl~p~~~~~~~~~~~~~~~~~~ 161 (420)
T TIGR00767 89 RRFGLRTGDTVEGKIRS--PKEGEKYFALLKVES-----VNGDDPDKAKERPLFDNLTPLYPNERLKLERGNTDPEDLST 161 (420)
T ss_pred HHHCCCCCCEEEEEECC--CCCCCHHHHHEEEEC-----CCCCCCHHHHHHCCCCCCCCCCCCHHHEECCCCCCCHHHHH
T ss_conf 65204457513311017--632211211001100-----26765012332023333454454102100146775114677
Q ss_pred HHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 23310111156833655247788611589999999886302466787606999951677678999998511467421158
Q gi|254780617|r 151 KAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSI 230 (509)
Q Consensus 151 ~~ID~l~pigrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tv 230 (509)
T Consensus 162 ~~~~~~~p~g~g~~~l~~~pp~~g~~~~~~-~~~-----~~~~~~~p~~~l~~~l~d~~p~~~~~~~~~~~g~------- 228 (420)
T TIGR00767 162 RVLDLFAPIGKGQRGLIVAPPKAGKTVLLQ-KIA-----NAITRNHPEVELIVLLIDERPEEVTDLQRSVKGE------- 228 (420)
T ss_pred HHHHHHHCCCCCCCEEEECCCCCCHHHHHH-HHH-----HHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHH-------
T ss_conf 888765103677530365177544268888-888-----7763268743799886336622567777764212-------
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99728878889999988766666675420468847996164789999987545303787543337520012467888875
Q gi|254780617|r 231 VVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAA 310 (509)
Q Consensus 231 vv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~ 310 (509)
T Consensus 229 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~p~~g~~l~-gg~~~~~~~~p~~~~g~~~ 307 (420)
T TIGR00767 229 VVASTFDEPPSRHVQVAELVLEKAKRLVEHKKDVVILLDSITRLARAYNTVTPPSGKVLS-GGVDANALHRPKRFFGAAR 307 (420)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCCCCCEEE-CCCCHHHHCCCHHHHHHHC
T ss_conf 321001344101246889999988887632563477402356766654103666663221-5645012014145530010
Q ss_pred HCCCCCCCCCEEEEEEEECCCC-CCCCCHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHH
Q ss_conf 0454458873567531003676-644311466885406169961501221026654334441220343438988775567
Q gi|254780617|r 311 KMSDALGAGSLTALPVIETQVN-DVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSGA 389 (509)
Q Consensus 311 ~~~~~~g~GSiT~~~~v~~~~~-D~~~~i~~~~~si~DG~i~l~~~l~~~g~~Paid~~~S~SRv~~~~~~~~~~~~a~~ 389 (509)
T Consensus 308 ~---~~~gg~l~~~~~~~~~~g~~~d~~~~~~~~g~g~~~~~l~~~~~~~~~~p~~~~~~~g~~~~~~l~~~~~~~~~~~ 384 (420)
T TIGR00767 308 N---IEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNLELHLDRKLADRRLFPAIDIKKSGTRKEELLLSPEELQKLWL 384 (420)
T ss_pred C---CCCCCCEEEEEHHHHHCCCCHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCCHHHHCCCHHHHHHHHH
T ss_conf 2---2466522221001231365101344443227775011100133321102210123456521232037788889999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 888799887678798
Q gi|254780617|r 390 VKGELAQYREMSSFS 404 (509)
Q Consensus 390 lr~~laqy~Ele~f~ 404 (509)
T Consensus 385 ~~~~~~~~~~~~~~~ 399 (420)
T TIGR00767 385 LRKVLSPLDDVEALE 399 (420)
T ss_pred HHHHHCCCCHHHHHH
T ss_conf 988740445057899