HHsearch alignment for GI: 254780617 and conserved domain: TIGR01040

>TIGR01040 V-ATPase_V1_B V-type ATPase, B subunit; InterPro: IPR005723 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release . V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c, c d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins . This entry represents subunit B from the V1 complex of V-ATPases. There are three copies each of subunits A (IPR005725 from INTERPRO) and B, both of which participate in nucleotide binding. However, only subunit A is catalytic for ATP hydrolysis, subunit B being noncatalytic , . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0008553 hydrogen-exporting ATPase activity phosphorylative mechanism, 0015988 energy coupled proton transport against electrochemical gradient, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=479.43  Aligned_cols=422  Identities=23%  Similarity=0.337  Sum_probs=384.6

Q ss_pred             EEEEEEEECCEEEEECCCCCCCCCEEEEC--CC--EEEEEEEECCCEEEEEEECCCCCCCC-CCEEEECCCEEEEECCHH
Q ss_conf             35899982758999758887737479957--98--18999920598599998058668678-988897798788667946
Q gi|254780617|r   28 IGRVLSIGDGIARVYGLNNIRAGEMVQFS--HG--VYGMALNLEVDNVGVVILGSYKEISE-GDIVKRTGRIVDVPVGLE  102 (509)
Q Consensus        28 ~G~V~~V~~giv~v~GL~~a~~GElv~~~--~g--~~G~Vi~l~~d~v~i~~l~~~~gI~~-G~~V~~tg~~~~vpvG~~  102 (509)
T Consensus         2 y~~~~~v~GPlv~l~~v~~~~~~eiv~~~l~~g~~r~Gqvle~~~~~a~vqvfeGt~G~d~~~~~~~~~G~~l~~~~s~~   81 (464)
T TIGR01040         2 YKTVSGVNGPLVILENVKFPKFAEIVNLTLPDGTVRKGQVLEVSGEKAVVQVFEGTSGIDAKKTTVEFTGDILRLPVSED   81 (464)
T ss_pred             CCEECCCCCCEEEEHHCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEECCHHHHHHHHHH
T ss_conf             62000046644230010551200046676167861233057760772089982476441222314554210231122045


Q ss_pred             HHHCCCCHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHCCHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf             98300030023144664445444100101357731126600144416023310111156833655247788611589999
Q gi|254780617|r  103 LLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDT  182 (509)
Q Consensus       103 lLGRVvD~lG~PlDg~g~i~~~~~~~i~~~~p~~~~R~~i~~~l~TGI~~ID~l~pigrGQR~~I~g~~g~GKt~l~~~~  182 (509)
T Consensus        82 mlGr~f~GsG~~id~gP~~l~~~y~d~~G~~inP~~r~yP~em~~tG~s~id~~~si~rGqkiP~fsa~GlPhne~aa-q  160 (464)
T TIGR01040        82 MLGRVFNGSGKPIDKGPKVLAEDYLDINGQPINPQARIYPEEMIQTGISAIDVMNSIARGQKIPLFSAAGLPHNEIAA-Q  160 (464)
T ss_pred             HHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHH-H
T ss_conf             310110367752235653103544114786458621147388985020256656665436533123047886356788-8


Q ss_pred             HHHHHHHC---CCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99988630---246678760699995167767899999851146742115899728878889999988766666675420
Q gi|254780617|r  183 FLNQKSSH---DKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRD  259 (509)
Q Consensus       183 I~nq~~~~---~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tvvv~a~a~~~~~~r~~ap~~a~aiAEyfr~  259 (509)
T Consensus       161 i~rq~~lv~~~~~~~~~~~f~~vf~amGvn~e~a~ff~~df~~~G~~~~~~lflnlandPt~eri~tPr~al~~ae~lay  240 (464)
T TIGR01040       161 ICRQAGLVKKDVKDGHEDNFAIVFAAMGVNLETARFFKQDFEENGSMERVTLFLNLANDPTIERIITPRLALTTAEYLAY  240 (464)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEEEHHCCHHHHHHHHHHHHHHCCCHHHEEEEEEECCCCCCHHHHCHHHHHHHHHHHHH
T ss_conf             88877888887640223431565200101057889998867534771013566541478530122000367777877765


Q ss_pred             -CCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCH
Q ss_conf             -4688479961647899999875453037875433375200124678888750454458873567531003676644311
Q gi|254780617|r  260 -NGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYI  338 (509)
Q Consensus       260 -~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~~~~~~~g~GSiT~~~~v~~~~~D~~~~i  338 (509)
T Consensus       241 ~~~~hvl~iltd~ssya~alrevsaareevPgrrG~PGymy~dl~~iyeraGrv~Gr~--Gsitq~PiltmPnddithPi  318 (464)
T TIGR01040       241 ECEKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRN--GSITQIPILTMPNDDITHPI  318 (464)
T ss_pred             HCCCEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC--CCEEEEEEEECCCCCCCCCC
T ss_conf             2476079985033579999987765554067778887325777899876304211676--64242002425764456776


Q ss_pred             HHHHHHHHCCEEEEECCHHHHCCCCCCCCCCCHHHCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHH-HCC-CC
Q ss_conf             466885406169961501221026654334441220343438-----98877556788879988767879876-338-99
Q gi|254780617|r  339 PTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQV-----KAMKQVSGAVKGELAQYREMSSFSKF-SSD-LD  411 (509)
Q Consensus       339 ~~~~~si~DG~i~l~~~l~~~g~~Paid~~~S~SRv~~~~~~-----~~~~~~a~~lr~~laqy~Ele~f~~f-gsd-lD  411 (509)
T Consensus       319 PdltGyitegqiy~dr~l~~~~iyPPi~vlPslsrlmk~aiG~gmtr~dh~~vs~qly~~~~~~~d~~amkavvG~eal~  398 (464)
T TIGR01040       319 PDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYAKYAIGKDVAAMKAVVGEEALS  398 (464)
T ss_pred             CCCCCEEECCEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             53211022242455101430557883235566899988752353101247889999998888887899998874022214


Q ss_pred             HHHHHHHHHHHHHHH-HHCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             899999999999999-96699988748899999999986698
Q gi|254780617|r  412 SSTQKFLSKGERLTE-LLKQPQFSPLAMEEQVVMIFAGISGC  452 (509)
Q Consensus       412 ~~t~~~l~rg~ri~e-~LkQ~~~~p~~~~~qv~~l~a~~~G~  452 (509)
T Consensus       399 ~~d~l~l~f~~~fe~~f~~qg~y~~r~~~~~ld~~W~llr~f  440 (464)
T TIGR01040       399 SEDLLYLEFLEKFEKKFIAQGAYENRTIFESLDLAWELLRIF  440 (464)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             131124578889988775126521026898898889999986