HHsearch alignment for GI: 254780617 and conserved domain: TIGR01447
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=94.03 E-value=0.094 Score=31.80 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=68.9
Q ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHC-----CCCCCCEEEE
Q ss_conf 11156833655247788611589999999886302466787606999951677678999998511-----4674211589
Q gi|254780617|r 157 IPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALE-----DRGALSYSIV 231 (509)
Q Consensus 157 ~pigrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~-----~~~~~~~tvv 231 (509)
T Consensus 237 ~~aL~~~f~li~GGPGTGKTTTv~~LL~al~~~~~~~G~~~~~I~l~APTGKAa~RL~esl~~~~~~L~~~~~aid~~~~ 316 (753)
T TIGR01447 237 ALALKSNFSLITGGPGTGKTTTVARLLLALIKQSPKQGKPRLRIALAAPTGKAAARLAESLRKAVKKLAAENMAIDEDLI 316 (753)
T ss_pred HHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 99860876899879889778999999999999898649974047886684479999999999886322342366587985
Q ss_pred EEECCCCCHHHHHHHHHHHHH-HHHHHHC-C----CCCEEEEEE
Q ss_conf 972887888999998876666-6675420-4----688479961
Q gi|254780617|r 232 VVASASDPAPMQLLAPFAGCA-MGEYFRD-N----GYHALIAYD 269 (509)
Q Consensus 232 v~a~a~~~~~~r~~ap~~a~a-iAEyfr~-~----G~~VLi~~D 269 (509)
T Consensus 317 ~~~~~~~~TiHrLLG~~---~I~~~~fr~h~~N~L~~DVL-vvD 356 (753)
T TIGR01447 317 AALPSEATTIHRLLGIK---PIDTKRFRHHERNPLPLDVL-VVD 356 (753)
T ss_pred CCCCHHHHHHHHHHCCC---CCCCCCCCCCCCCCCCCCEE-EEC
T ss_conf 48720456888861661---47876776777788985527-870