HHsearch alignment for GI: 254780617 and conserved domain: TIGR01842
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=90.58 E-value=0.2 Score=29.50 Aligned_cols=34 Identities=32% Similarity=0.494 Sum_probs=24.7
Q ss_pred CHHHHHCCHHHHHCCCCCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 001444160233101111568336552477886115899
Q gi|254780617|r 142 VCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIIL 180 (509)
Q Consensus 142 i~~~l~TGI~~ID~l~pigrGQR~~I~g~~g~GKt~l~~ 180 (509)
T Consensus 341 vPk~~l~gi~-----F~~~aGe~laIIGPSgSGKStLaR 374 (556)
T TIGR01842 341 VPKPTLRGIS-----FAIQAGEALAIIGPSGSGKSTLAR 374 (556)
T ss_pred CCHHHHCCCC-----EEECCCCEEEEECCCCCCHHHHHH
T ss_conf 7614227862-----156377458887478652588987