HHsearch alignment for GI: 254780617 and conserved domain: TIGR02858
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=93.09 E-value=0.14 Score=30.63 Aligned_cols=152 Identities=24% Similarity=0.246 Sum_probs=78.9
Q ss_pred CHHHHHCCC-CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCC
Q ss_conf 602331011-1156833655247788611589999999886302-46678760699995167767899999851146742
Q gi|254780617|r 149 GIKAIDSLI-PIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHD-KGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGAL 226 (509)
Q Consensus 149 GI~~ID~l~-pigrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~-~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~ 226 (509)
T Consensus 109 A~~~~~yL~d~~~~~~NTLiIsPPq~GKTTlLRDlaR~~S-tG~~~~~~~g~KV---givDER-SEIAgC~~GvPQ~~vG 183 (282)
T TIGR02858 109 ADKILPYLVDRNGRVLNTLIISPPQCGKTTLLRDLARILS-TGISKLGLKGKKV---GIVDER-SEIAGCVNGVPQLDVG 183 (282)
T ss_pred CHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHH-CCCCCCCCCCCCE---EEEECC-HHHHHHCCCCCCCCCC
T ss_conf 5666887730589446788886889885104888988860-7854246899746---998432-4656545882414467
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHH------HHHH------------HHHHHHCCCC
Q ss_conf 115899728878889999988766666675420468847996164789------9999------------8754530378
Q gi|254780617|r 227 SYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKH------AVAY------------RQLSLLLRRP 288 (509)
Q Consensus 227 ~~tvvv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~------A~a~------------reisl~~~~p 288 (509)
T Consensus 184 ~RtDVLD~C---PKAE-------GmMM~i--RSMSP~Vi-v~DEIGr~ED~~Al~eA~naGV~~I~TaHg~~~~Dl~kRP 250 (282)
T TIGR02858 184 IRTDVLDGC---PKAE-------GMMMLI--RSMSPDVI-VVDEIGREEDVEALLEALNAGVSVIATAHGRDLEDLKKRP 250 (282)
T ss_pred CCEEECCCC---CHHH-------HHHHHH--HCCCCCEE-EEECCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHCCH
T ss_conf 606751788---5378-------999999--70698579-9814889533899999861675688764048812665076
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf 7543337520012467888875045445887356753
Q gi|254780617|r 289 PGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALP 325 (509)
Q Consensus 289 p~~~gyp~~vf~~~s~l~ERa~~~~~~~g~GSiT~~~ 325 (509)
T Consensus 251 ~fk~l-------~e~~~Fer~v~Ls~~~G~GTve~vy 280 (282)
T TIGR02858 251 VFKEL-------LEQKAFERYVVLSRRKGPGTVEAVY 280 (282)
T ss_pred HHHHH-------HHHCCCEEEEEECCCCCCCEEEEEC
T ss_conf 67999-------9724314899836889883244531