HHsearch alignment for GI: 254780617 and conserved domain: TIGR02928
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=95.00 E-value=0.032 Score=35.16 Aligned_cols=126 Identities=25% Similarity=0.378 Sum_probs=73.9
Q ss_pred CCCCCCC-CCE---EEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 0111156-833---655247788611589999999886302466787606999951677678999998511467421158
Q gi|254780617|r 155 SLIPIGR-GQR---ELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSI 230 (509)
Q Consensus 155 ~l~pigr-GQR---~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tv 230 (509)
T Consensus 32 ~L~~~l~PG~~P~Ni~iYGkTGtGKT~v-t~~v~~~l~~~~~~~d~~D~~~~~~NC~~~~T~y~~~~~L~~~-------- 102 (383)
T TIGR02928 32 ALRPILRPGSRPSNIFIYGKTGTGKTAV-TKYVMKELEEAAEDRDVRDVSTVYINCQILDTSYQVLVELANQ-------- 102 (383)
T ss_pred HHHHHHCCCCCCCCEEEECCCCCCHHHH-HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHH--------
T ss_conf 9887506748987258878889878899-9999999999862269971589997785468469999999998--------
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHH--------CCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCC-CCCCCCHHH
Q ss_conf 9972887888999998876666667542--------0468847996164789999987545303787543-337520012
Q gi|254780617|r 231 VVVASASDPAPMQLLAPFAGCAMGEYFR--------DNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGRE-AYPGDVFYL 301 (509)
Q Consensus 231 vv~a~a~~~~~~r~~ap~~a~aiAEyfr--------~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~-gyp~~vf~~ 301 (509)
T Consensus 103 -----ln-~~~~~~~vP~tG~s~~~~~~~l~~~l~~~~~~~~~ivLDEiD~L----------v-~~~~d~PAyS~-~LY~ 164 (383)
T TIGR02928 103 -----LN-RRGSGEEVPTTGLSTSEVFRELYKELNRERGDSLIIVLDEIDKL----------V-RKDDDDPAYSK-LLYQ 164 (383)
T ss_pred -----HC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHH----------H-CCCCCCHHHHH-HHHH
T ss_conf -----51-57788889887787899999999998320188799986231022----------1-58888807878-8534
Q ss_pred HHHHHH
Q ss_conf 467888
Q gi|254780617|r 302 HSRLLE 307 (509)
Q Consensus 302 ~s~l~E 307 (509)
T Consensus 165 L~Ra~~ 170 (383)
T TIGR02928 165 LSRARE 170 (383)
T ss_pred HHHHHH
T ss_conf 331000