HHsearch alignment for GI: 254780617 and conserved domain: TIGR03324
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=100.00 E-value=0 Score=1229.44 Aligned_cols=492 Identities=48% Similarity=0.809 Sum_probs=485.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCEEEEECCCCCCCCCEEEECCCEEEEEEEECCCEEEEEEECCCCCCCC
Q ss_conf 89999999999842455542010358999827589997588877374799579818999920598599998058668678
Q gi|254780617|r 5 AAEISDILRKRIKDFGNDSEFSEIGRVLSIGDGIARVYGLNNIRAGEMVQFSHGVYGMALNLEVDNVGVVILGSYKEISE 84 (509)
Q Consensus 5 ~~eis~~l~~~i~~~~~~~~~~~~G~V~~V~~giv~v~GL~~a~~GElv~~~~g~~G~Vi~l~~d~v~i~~l~~~~gI~~ 84 (509)
T Consensus 5 ~~~~~~~~~~~i~~~~~~~~~~e~G~v~~vgdgia~v~Gl~~~~~~el~~f~~~~~g~~~nle~~~vg~v~lg~~~~i~~ 84 (497)
T TIGR03324 5 LDKAFQQLDQARESFQPQLTVQEVGTVESVSTGIARVHGLPGVGFEELLRFPGGLLGIAFNVDEDEVGVVLLGEYSHLQA 84 (497)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCEEEEEECCCCCCCC
T ss_conf 99999999999972488752466679999748569997850104486388089988999963788379999569877689
Q ss_pred CCEEEECCCEEEEECCHHHHHCCCCHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHCCHHHHHCCCCCCCCCE
Q ss_conf 98889779878866794698300030023144664445444100101357731126600144416023310111156833
Q gi|254780617|r 85 GDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQR 164 (509)
Q Consensus 85 G~~V~~tg~~~~vpvG~~lLGRVvD~lG~PlDg~g~i~~~~~~~i~~~~p~~~~R~~i~~~l~TGI~~ID~l~pigrGQR 164 (509)
T Consensus 85 G~~V~~TG~~l~VPVG~~lLGRVvd~LG~PiDGkgpi~~~~~~pie~~aP~i~~R~~V~epL~TGIkaID~liPIGrGQR 164 (497)
T TIGR03324 85 GDEVERTGRVMDVPVGDGLLGRVVDPLGRPLDGGGPLASSPRLPIERPAPPIMDRAPVTVPLQTGLKVIDALIPIGRGQR 164 (497)
T ss_pred CCEEEECCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCE
T ss_conf 99998589822874488871764588855678999988764102457898963478888710024145542465567746
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHH
Q ss_conf 65524778861158999999988630246678760699995167767899999851146742115899728878889999
Q gi|254780617|r 165 ELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPAPMQL 244 (509)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tvvv~a~a~~~~~~r~ 244 (509)
T Consensus 165 elIigdrgtGKTtla~dtIinqk~~--------~vicVyvaIGqr~seV~~~v~~l~~~gal~~TvVV~Ata~dpa~lr~ 236 (497)
T TIGR03324 165 ELILGDRQTGKTAIAIDTILNQKGR--------NVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQY 236 (497)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCC--------CEEEEEEEEEEEHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHH
T ss_conf 7764588888008899999704566--------71899997325078799999998748752341799956889989998
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 98876666667542046884799616478999998754530378754333752001246788887504544588735675
Q gi|254780617|r 245 LAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTAL 324 (509)
Q Consensus 245 ~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~~~~~~~g~GSiT~~ 324 (509)
T Consensus 237 ~Apyaa~aiAEyFrd~G~dVLlv~DdLTr~A~A~REisLll~rpPgreaYPgdvFylhsrLLERA~~l~~~~ggGSiTal 316 (497)
T TIGR03324 237 IAPYAATSIGEHFMEQGRDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYVHSRLLERSTHLNEELGGGSLTAL 316 (497)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEE
T ss_conf 87899999999999689748999978069999999999864899987788935987707888732477899999772324
Q ss_pred EEEECCCCCCCCCHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31003676644311466885406169961501221026654334441220343438988775567888799887678798
Q gi|254780617|r 325 PVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYREMSSFS 404 (509)
Q Consensus 325 ~~v~~~~~D~~~~i~~~~~si~DG~i~l~~~l~~~g~~Paid~~~S~SRv~~~~~~~~~~~~a~~lr~~laqy~Ele~f~ 404 (509)
T Consensus 317 pivet~~~D~sayIptnvisItDGqI~L~~~Lf~~G~~PAIdvg~SVSRVG~~aq~~~~k~vag~lrl~laq~~El~~f~ 396 (497)
T TIGR03324 317 PIIETEAQNISAYIPTNLISITDGQIYLSPTLFELGVLPAVDVGKSVSRVGGKAQLAAYRAVAGDLKLAYAQFEELETFA 396 (497)
T ss_pred EEEECCCCCCCCCHHHHHHHHCCCEEEECCCHHHCCCCCCCCCCCCEECCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79980288656644542220108679972407657997643568773136724305899987445699999899999998
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76338998999999999999999669998874889999999998669806679899999999999999741599999887
Q gi|254780617|r 405 KFSSDLDSSTQKFLSKGERLTELLKQPQFSPLAMEEQVVMIFAGISGCLDEVAVSQVRKFETNFLSHMRVSSQDILEDIR 484 (509)
Q Consensus 405 ~fgsdlD~~t~~~l~rg~ri~e~LkQ~~~~p~~~~~qv~~l~a~~~G~ld~i~v~~I~~fe~~l~~~l~~~~~ei~~~I~ 484 (509)
T Consensus 397 qfgs~ld~~t~~~l~rG~r~~e~lkQ~~~~p~~~~~qv~~l~a~~~g~ld~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~ 476 (497)
T TIGR03324 397 RFGARLDENTRKTIEHGRRIRACLKQTQSSPLTVPQQIAILLALTNGLFDGVDLDAMPEAESAIRAAVTSLPADLRERLQ 476 (497)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 76244489999999887999998667778996999999999998539866688899999999999999864389999998
Q ss_pred HCCCCCHHHHHHHHHHHHHH
Q ss_conf 32798989999999999999
Q gi|254780617|r 485 KQKVLTDDIRSKLINEIKVF 504 (509)
Q Consensus 485 ~~~~l~de~~~~L~~~i~~~ 504 (509)
T Consensus 477 ~~~~l~~~~~~~l~~~~~~a 496 (497)
T TIGR03324 477 SGKKLSDEDREQILDIARGA 496 (497)
T ss_pred HCCCCCHHHHHHHHHHHHHH
T ss_conf 63999989999999999851