HHsearch alignment for GI: 254780617 and conserved domain: TIGR03496

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00  E-value=0  Score=915.75  Aligned_cols=404  Identities=30%  Similarity=0.453  Sum_probs=386.0

Q ss_pred             EEEEEEECCEEEEECCCCCCCCCEEEEC--CC--EEEEEEEECCCEEEEEEECCCCCCCCCCEEEECCCEEEEECCHHHH
Q ss_conf             5899982758999758887737479957--98--1899992059859999805866867898889779878866794698
Q gi|254780617|r   29 GRVLSIGDGIARVYGLNNIRAGEMVQFS--HG--VYGMALNLEVDNVGVVILGSYKEISEGDIVKRTGRIVDVPVGLELL  104 (509)
Q Consensus        29 G~V~~V~~giv~v~GL~~a~~GElv~~~--~g--~~G~Vi~l~~d~v~i~~l~~~~gI~~G~~V~~tg~~~~vpvG~~lL  104 (509)
T Consensus         1 GrV~~V~G~vIea~g~-~~~IGe~c~I~~~~g~~i~aEVVgf~~~~v~l~~~~~~~Gi~~G~~V~~tg~~~~v~vg~~lL   79 (411)
T TIGR03496         1 GRLTRVVGLVLEAVGL-RAPVGSRCEIESADGDPIEAEVVGFSGDRVLLMPLEDVEGLRPGARVFPLEGPLRLPVGDSLL   79 (411)
T ss_pred             CEEEEEEEEEEEEECC-CCCCCCEEEEEECCCCEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCCCEEECCHHHC
T ss_conf             9799998018999737-999788899993899789999999729979999866887888899999789966676387653


Q ss_pred             HCCCCHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHCCHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf             30003002314466444544410010135773112660014441602331011115683365524778861158999999
Q gi|254780617|r  105 GRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFL  184 (509)
Q Consensus       105 GRVvD~lG~PlDg~g~i~~~~~~~i~~~~p~~~~R~~i~~~l~TGI~~ID~l~pigrGQR~~I~g~~g~GKt~l~~~~I~  184 (509)
T Consensus        80 GRVid~lG~PlDg~~~~~~~~~~pi~~~~p~p~~R~~i~epl~TGIraID~l~pig~GQR~gIf~g~GvGKs~L-l~~ia  158 (411)
T TIGR03496        80 GRVIDGLGRPLDGKGPLDAGERVPLYAPPINPLKRAPIDEPLDVGVRAINGLLTVGRGQRIGIFAGSGVGKSVL-LGMMA  158 (411)
T ss_pred             CCEECCCCCCCCCCCCCCCCCEEEEECCCCCHHHCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCHHHH-HHHHH
T ss_conf             78857888765777888878456500799681431787762115834663446614686313227999867799-99997


Q ss_pred             HHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             98863024667876069999516776789999985114674211589972887888999998876666667542046884
Q gi|254780617|r  185 NQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHA  264 (509)
Q Consensus       185 nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tvvv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~V  264 (509)
T Consensus       159 ~~~~---------adv~VialIGeR~rev~efie~~~~~~~~~~tvvv~atsd~p~~~r~~a~~~a~aiAEyfrd~G~~V  229 (411)
T TIGR03496       159 RYTE---------ADVVVVGLIGERGREVKEFIEEILGEEGLARSVVVAATADESPLMRLRAAFYATAIAEYFRDQGKDV  229 (411)
T ss_pred             HCCC---------CCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf             5348---------9889995325305899999998622256521699994388998999999999999999999669946


Q ss_pred             EEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHH
Q ss_conf             79961647899999875453037875433375200124678888750454458873567531003676644311466885
Q gi|254780617|r  265 LIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVIS  344 (509)
Q Consensus       265 Li~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~~~~~~~g~GSiT~~~~v~~~~~D~~~~i~~~~~s  344 (509)
T Consensus       230 Ll~~Dsltr~A~A~REisl~~ge~P~~~gyp~~vf~~l~~l~ERag~~~~--~~GSIT~~~~V~~~~dD~~dpi~d~~~~  307 (411)
T TIGR03496       230 LLLMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAKLPRLVERAGNGEE--GKGSITAFYTVLVEGDDQQDPIADAARA  307 (411)
T ss_pred             EEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC--CCEEEEEEEEEECCCCCCCCCHHHHHHH
T ss_conf             99974688999999899987379998667885388887788874368999--8986877358975798756645776565


Q ss_pred             HHCCEEEEECCHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHH
Q ss_conf             406169961501221026654334441220343438988775567888799887678798763---38998999999999
Q gi|254780617|r  345 ITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYREMSSFSKFS---SDLDSSTQKFLSKG  421 (509)
Q Consensus       345 i~DG~i~l~~~l~~~g~~Paid~~~S~SRv~~~~~~~~~~~~a~~lr~~laqy~Ele~f~~fg---sdlD~~t~~~l~rg  421 (509)
T Consensus       308 ilDG~ivLsr~la~~g~yPAIdvl~S~SR~~~~~~~~~~~~~a~~~r~~la~y~e~~~li~~g~y~~g~d~~~d~ai~~~  387 (411)
T TIGR03496       308 ILDGHIVLSRELAEQGHYPAIDILASISRVMPDVVSPEHLQLARRFKQLLSRYQENRDLISIGAYQPGSDPELDQAIALY  387 (411)
T ss_pred             HEEEEEEECHHHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf             14048999398996799997186405644233216899999999999999998999999997472369998999999979


Q ss_pred             HHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf             999999669998874889999999
Q gi|254780617|r  422 ERLTELLKQPQFSPLAMEEQVVMI  445 (509)
Q Consensus       422 ~ri~e~LkQ~~~~p~~~~~qv~~l  445 (509)
T Consensus       388 ~~i~~fL~Q~~~e~~~~~~~~~~l  411 (411)
T TIGR03496       388 PRIEAFLQQGMRERASFEESLEAL  411 (411)
T ss_pred             HHHHHHCCCCCCCCCCHHHHHHHC
T ss_conf             999997289999997999999649