HHsearch alignment for GI: 254780617 and conserved domain: TIGR03497
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=0 Score=900.97 Aligned_cols=405 Identities=31% Similarity=0.479 Sum_probs=388.4
Q ss_pred EEEEEEECCEEEEECCCCCCCCCEEEEC--C--CEEEEEEEECCCEEEEEEECCCCCCCCCCEEEECCCEEEEECCHHHH
Q ss_conf 5899982758999758887737479957--9--81899992059859999805866867898889779878866794698
Q gi|254780617|r 29 GRVLSIGDGIARVYGLNNIRAGEMVQFS--H--GVYGMALNLEVDNVGVVILGSYKEISEGDIVKRTGRIVDVPVGLELL 104 (509)
Q Consensus 29 G~V~~V~~giv~v~GL~~a~~GElv~~~--~--g~~G~Vi~l~~d~v~i~~l~~~~gI~~G~~V~~tg~~~~vpvG~~lL 104 (509)
T Consensus 1 GrV~~i~G~~iev~g~-~~~iGe~c~I~~~~g~~i~aEVv~~~~~~~~l~~~~~t~Gi~~G~~V~~tg~~~~vpvg~~lL 79 (413)
T TIGR03497 1 GKVTRVIGLTIESKGP-KAKIGELCSILTKGGKPVLAEVVGFKEENVLLMPLGEVEGIGPGSLVIATGRPLAIKVGKGLL 79 (413)
T ss_pred CEEEEEEEEEEEEEEC-CCCCCCEEEEEECCCCEEEEEEEEECCCEEEEEEECCCCCCCCCCEEEECCCCCEEECCCCCC
T ss_conf 9899998279999807-998567599994899889999999829979999936987889999999899974788684305
Q ss_pred HCCCCHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHCCHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf 30003002314466444544410010135773112660014441602331011115683365524778861158999999
Q gi|254780617|r 105 GRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFL 184 (509)
Q Consensus 105 GRVvD~lG~PlDg~g~i~~~~~~~i~~~~p~~~~R~~i~~~l~TGI~~ID~l~pigrGQR~~I~g~~g~GKt~l~~~~I~ 184 (509)
T Consensus 80 GRV~d~~G~PlDg~~~~~~~~~~~i~~~~p~p~~R~~i~e~l~TGIraID~l~pigrGQRigIfag~GvGKt~L-l~~ia 158 (413)
T TIGR03497 80 GRVLDGLGRPLDGEGPIIGEEPYPLDNPPPNPLKRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTL-LGMIA 158 (413)
T ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEECCCEEECCCCCCCCCCEEEECCCCCCCHHHH-HHHHH
T ss_conf 68877676655898677776114444689963440678834203865421657611375442105899877699-99999
Q ss_pred HHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 98863024667876069999516776789999985114674211589972887888999998876666667542046884
Q gi|254780617|r 185 NQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHA 264 (509)
Q Consensus 185 nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tvvv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~V 264 (509)
T Consensus 159 ~~~~---------adv~Vi~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~r~~a~~~a~aiAEyfrd~Gk~V 229 (413)
T TIGR03497 159 RNAK---------ADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAAFTATAIAEYFRDQGKDV 229 (413)
T ss_pred HHHC---------CCCCEEEEEEEECHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 8743---------7852388863322899999998631256421599984587887999887746327899998679968
Q ss_pred EEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHH
Q ss_conf 79961647899999875453037875433375200124678888750454458873567531003676644311466885
Q gi|254780617|r 265 LIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVIS 344 (509)
Q Consensus 265 Li~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~~~~~~~g~GSiT~~~~v~~~~~D~~~~i~~~~~s 344 (509)
T Consensus 230 Ll~~Dsltr~A~A~REisl~~ge~P~~~gyp~~~~s~l~~l~ERag~----~~~GSIT~~~~v~~~~dD~tdPi~d~~~s 305 (413)
T TIGR03497 230 LLMMDSVTRFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGN----SQKGSITGFYTVLVDGDDMNEPIADAVRG 305 (413)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC----CCCCCEEEEEEEEECCCCCCCCCHHHHHH
T ss_conf 99973712988999999986589998878685499887898886138----99985466778971288767771666757
Q ss_pred HHCCEEEEECCHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHH
Q ss_conf 4061699615012210266543344412203434389887755678887998876787987633---8998999999999
Q gi|254780617|r 345 ITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYREMSSFSKFSS---DLDSSTQKFLSKG 421 (509)
Q Consensus 345 i~DG~i~l~~~l~~~g~~Paid~~~S~SRv~~~~~~~~~~~~a~~lr~~laqy~Ele~f~~fgs---dlD~~t~~~l~rg 421 (509)
T Consensus 306 i~DG~ivLsr~la~~g~yPaIdvl~S~SR~~~~~~~~~h~~~a~~~r~~~a~y~e~~~li~~g~y~~g~d~~~d~ai~~~ 385 (413)
T TIGR03497 306 ILDGHIVLSRELAAKNHYPAIDVLASVSRVMNEIVSEEHKELAGKLRELLAVYKEAEDLINIGAYKRGSNPKIDEAIRYI 385 (413)
T ss_pred HCCEEEEECHHHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 50618998688986699998186424655343115699999999999999988999999996286679998899999989
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 999999669998874889999999998
Q gi|254780617|r 422 ERLTELLKQPQFSPLAMEEQVVMIFAG 448 (509)
Q Consensus 422 ~ri~e~LkQ~~~~p~~~~~qv~~l~a~ 448 (509)
T Consensus 386 ~~i~~fL~Q~~~e~~~~~~t~~~l~~l 412 (413)
T TIGR03497 386 EKINSFLKQGIDEKFTFEETVQLLKTL 412 (413)
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 999997389999997999999999986