HHsearch alignment for GI: 254780617 and conserved domain: cd00983
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.81 E-value=0.009 Score=39.19 Aligned_cols=135 Identities=19% Similarity=0.287 Sum_probs=82.3
Q ss_pred HHHHCCHHHHHCCCC---CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 144416023310111---15683365524778861158999999988630246678760699995167767899999851
Q gi|254780617|r 144 EPLSTGIKAIDSLIP---IGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKAL 220 (509)
Q Consensus 144 ~~l~TGI~~ID~l~p---igrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l 220 (509)
T Consensus 34 ~~i~TGs~~lD~alg~GGiP~GRivei~G~essGKTtlal~~ia~a--Qk------~gg~~~~iDa-E~a~-d~~~a~~l 103 (325)
T cd00983 34 EVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEA--QK------LGGTVAFIDA-EHAL-DPVYAKKL 103 (325)
T ss_pred CEECCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH--HH------CCCEEEEEEH-HHCC-CHHHHHHC
T ss_conf 3462681999999758996688089998898777999999999998--73------5983999962-5425-98999980
Q ss_pred CCCCC-CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf 14674-21158997288788899999887666666754204688479961647899999875453037875433375200
Q gi|254780617|r 221 EDRGA-LSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVF 299 (509)
Q Consensus 221 ~~~~~-~~~tvvv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf 299 (509)
T Consensus 104 ---GVD~~~--l~~~qp~--~~Eq------~l~i~~~li~s~~~dliViDSvaal~p~-~E~e~~~~-----d~~vg--- 161 (325)
T cd00983 104 ---GVDLDN--LLISQPD--TGEQ------ALEIADSLVRSGAVDLIVVDSVAALVPK-AEIEGEMG-----DSHVG--- 161 (325)
T ss_pred ---CCCHHH--EEEECCC--HHHH------HHHHHHHHHCCCCCCEEEECCCCCCCCH-HHHHHCCC-----CCHHH---
T ss_conf ---998467--5896663--8999------9999999751588767998151123657-88760113-----21143---
Q ss_pred HHHHHHHHHHHH
Q ss_conf 124678888750
Q gi|254780617|r 300 YLHSRLLERAAK 311 (509)
Q Consensus 300 ~~~s~l~ERa~~ 311 (509)
T Consensus 162 -~~ArlmskalR 172 (325)
T cd00983 162 -LQARLMSQALR 172 (325)
T ss_pred -HHHHHHHHHHH
T ss_conf -89999999999