HHsearch alignment for GI: 254780617 and conserved domain: cd01120
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.94 E-value=2.6e-25 Score=202.76 Aligned_cols=160 Identities=32% Similarity=0.440 Sum_probs=148.4
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHH
Q ss_conf 65524778861158999999988630246678760699995167767899999851146742115899728878889999
Q gi|254780617|r 165 ELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPAPMQL 244 (509)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tvvv~a~a~~~~~~r~ 244 (509)
T Consensus 2 ~li~g~~g~GKttl~~~~~~~~~~~--------~~~~~~~~~ee~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK--------GGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARL 73 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--------CCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHH
T ss_conf 8999899998999999999998763--------99799998666448999999986224671307999359997699999
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 98876666667542046884799616478999998754530378754333752001246788887504544588735675
Q gi|254780617|r 245 LAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTAL 324 (509)
Q Consensus 245 ~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~~~~~~~g~GSiT~~ 324 (509)
T Consensus 74 ~------~~~~~~~~~~~~vliiiDSit~~~~a~~e~---------~~g~~~~v~~~~~~L~~~Ak~-------~~itvi 131 (165)
T cd01120 74 L------SKAERLRERGGDDLIILDELTRLVRALREI---------REGYPGELDEELRELLERARK-------GGVTVI 131 (165)
T ss_pred H------HHHHHHHHCCCCEEEEEECHHHHHHHHHHC---------CCCCHHHHHHHHHHHHHHHHC-------CCCEEE
T ss_conf 9------999999986997799992889988774001---------588678999999999999977-------982899
Q ss_pred EEEECCCCCCCCC----HHHHHHHHHCCEEEEEC
Q ss_conf 3100367664431----14668854061699615
Q gi|254780617|r 325 PVIETQVNDVSAY----IPTNVISITDGQIFLET 354 (509)
Q Consensus 325 ~~v~~~~~D~~~~----i~~~~~si~DG~i~l~~ 354 (509)
T Consensus 132 ~i~~v~~d~~~~~~~~~g~~~l~~~~d~~i~L~r 165 (165)
T cd01120 132 FTLQVPSGDKGDPRLTRGAQNLEDIADTVIVLSR 165 (165)
T ss_pred EEEEEECCCCCCCCCCCHHHHHHHHCCEEEEEEC
T ss_conf 9998433778997725388888364266999839