HHsearch alignment for GI: 254780617 and conserved domain: cd01121
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.36 E-value=0.006 Score=40.48 Aligned_cols=168 Identities=19% Similarity=0.236 Sum_probs=96.9
Q ss_pred HHHHCCHHHHHCCC--CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 14441602331011--1156833655247788611589999999886302466787606999951677678999998511
Q gi|254780617|r 144 EPLSTGIKAIDSLI--PIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALE 221 (509)
Q Consensus 144 ~~l~TGI~~ID~l~--pigrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~ 221 (509)
T Consensus 62 ~R~~Tgi~ElDRVLGGGiVpGSvvLlgGePGIGKSTLLLQia~~la~~~--------~~vLYvSGEES~~QIk~RA~RL- 132 (372)
T cd01121 62 ERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG--------GKVLYVSGEESPEQIKLRADRL- 132 (372)
T ss_pred CCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC--------CCEEEEECHHHHHHHHHHHHHH-
T ss_conf 5444783666540057730671799825998868899999999998639--------9389982456789999899985-
Q ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 46742115899728878889999988766666675420468847996164789999987545303787543337520012
Q gi|254780617|r 222 DRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYL 301 (509)
Q Consensus 222 ~~~~~~~tvvv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~ 301 (509)
T Consensus 133 --g~~~~~l~l~set~le~Il~------------~i-~~~kP~~lIIDSIQT~------------~~~~~~s~pGsvsQV 185 (372)
T cd01121 133 --GISTENLYLLAETNLEDILA------------SI-EELKPDLVIIDSIQTV------------YSSELTSAPGSVSQV 185 (372)
T ss_pred --CCCCCCCEEEECCCHHHHHH------------HH-HHHCCCEEEEECHHHC------------CCCCCCCCCCCHHHH
T ss_conf --87887727884356999999------------99-9719988999562202------------037767799878999
Q ss_pred H--HHHHHHHHHCCCCCCCCCEEEEEE-EECCCCCCCCCHHHHHHHHHCCEEEEECC
Q ss_conf 4--678888750454458873567531-00367664431146688540616996150
Q gi|254780617|r 302 H--SRLLERAAKMSDALGAGSLTALPV-IETQVNDVSAYIPTNVISITDGQIFLETE 355 (509)
Q Consensus 302 ~--s~l~ERa~~~~~~~g~GSiT~~~~-v~~~~~D~~~~i~~~~~si~DG~i~l~~~ 355 (509)
T Consensus 186 Reca~~L~~~AK~------~~i~~~lVGHVTK~G~iAGPkvL--EHmVDtVl~fEgd 234 (372)
T cd01121 186 RECTAELMRFAKE------RNIPIFIVGHVTKEGSIAGPKVL--EHMVDTVLYFEGD 234 (372)
T ss_pred HHHHHHHHHHHHH------CCCEEEEEEEECCCCCCCCCHHH--EEEEEEEEEECCC
T ss_conf 9999999999986------19739999876268863774031--0021368875157