HHsearch alignment for GI: 254780617 and conserved domain: cd01124
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.00 E-value=0.00013 Score=52.54 Aligned_cols=162 Identities=17% Similarity=0.111 Sum_probs=84.1
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHC-------CCCCCCEEEEEEEC-C
Q ss_conf 655247788611589999999886302466787606999951677678999998511-------46742115899728-8
Q gi|254780617|r 165 ELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALE-------DRGALSYSIVVVAS-A 236 (509)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~-------~~~~~~~tvvv~a~-a 236 (509)
T Consensus 2 tLi~G~pGsGKT~~a~qfl~~~a~~g--------e~~lyis~eE~~~~l~~~~~~~g~d~~~~~~~g~---l~i~~~~~~ 70 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG--------EPGLYVTLEESPEELIENAESLGWDLERLEDEGL---LAIVDADPD 70 (187)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCC--------CCEEEEEECCCHHHHHHHHHHCCCCHHHHHHCCC---EEEEECCCC
T ss_conf 15876899999999999999998769--------9789999507999999999983998589864585---689962620
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 78889999988766666675420468847996164789999987545303787543337520012467888875045445
Q gi|254780617|r 237 SDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDAL 316 (509)
Q Consensus 237 ~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~~~~~~~ 316 (509)
T Consensus 71 ~~~~~~~~~~~~l~~~i~~~i~~~~~~~-vVIDSi~~l~~~~~~------------~~~~~~~----~l~~~l~---~~- 129 (187)
T cd01124 71 EIGPAESSLRLELIQRLKDAIEEFKAKR-VVIDSVSGLLLMEQS------------TARLEIR----RLLFALK---RF- 129 (187)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCE-EEECCHHHHHHCCHH------------HHHHHHH----HHHHHHH---HC-
T ss_conf 0220333236789999999999849989-999486887525666------------6899999----9999999---76-
Q ss_pred CCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCEEEEECCHHHHCC
Q ss_conf 887356753100367664431146688540616996150122102
Q gi|254780617|r 317 GAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGI 361 (509)
Q Consensus 317 g~GSiT~~~~v~~~~~D~~~~i~~~~~si~DG~i~l~~~l~~~g~ 361 (509)
T Consensus 130 ---~~t~ll~~e~~~~~~~~~~~~~~~~l~DgiI~L~~~~~~~~~ 171 (187)
T cd01124 130 ---GVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLRLDEEGGRL 171 (187)
T ss_pred ---CCCEEEEEEECCCCCCCCCCCCEEEEEEEEEEEEEEECCCEE
T ss_conf ---996899997425667667888477997899999788049979