HHsearch alignment for GI: 254780617 and conserved domain: cd01134
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=100.00 E-value=0 Score=637.42 Aligned_cols=333 Identities=24% Similarity=0.338 Sum_probs=281.9
Q ss_pred EEEEEEECCEEE-EECCCCCCCCCEEEECCCEEEEEEEECCCEEEEEEECCCCCCCCCCE---EEEC----CCEEEEECC
Q ss_conf 589998275899-97588877374799579818999920598599998058668678988---8977----987886679
Q gi|254780617|r 29 GRVLSIGDGIAR-VYGLNNIRAGEMVQFSHGVYGMALNLEVDNVGVVILGSYKEISEGDI---VKRT----GRIVDVPVG 100 (509)
Q Consensus 29 G~V~~V~~giv~-v~GL~~a~~GElv~~~~g~~G~Vi~l~~d~v~i~~l~~~~gI~~G~~---V~~t----g~~~~vpvG 100 (509)
T Consensus 9 Gll~~I~DGIqRPL~~l~e~~~g~fi~rG~~~~~Ld~~~~w~f~p~v~~Gd--~V~~GDi~G~V~E~~~i~HkImvpp~~ 86 (369)
T cd01134 9 GLLGSIYDGIQRPLDKIAEITKGIFIPRGVNVPALDRDKKWDFKPLVKVGD--HVTGGDILGTVPENSLIEHKIMVPPRV 86 (369)
T ss_pred CEECCCCCCCCCCHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCC--EECCCCEEEEEECCCCEEEEEECCCCC
T ss_conf 557120313566466887764795017999885767634015500267799--962786799985578367778648987
Q ss_pred HHHHHCCCCHHHCCCCC----------CCCCCCCCCCHHCCCCCCCCCCCCCHHHHHCCHHHHHCCCCCCCCCEEEEECC
Q ss_conf 46983000300231446----------64445444100101357731126600144416023310111156833655247
Q gi|254780617|r 101 LELLGRVVDALGNPIDG----------KGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGD 170 (509)
Q Consensus 101 ~~lLGRVvD~lG~PlDg----------~g~i~~~~~~~i~~~~p~~~~R~~i~~~l~TGI~~ID~l~pigrGQR~~I~g~ 170 (509)
T Consensus 87 ~G~v~~i~~~g~y~v~~~~~~~~~~g~~~~~~m~q~WPVr~prP-v~er~~~~~PL~TGir~ID~l~Pig~Gqr~~I~g~ 165 (369)
T cd01134 87 RGTVTYIAPAGDYTVDDVILEVEFDGKKEEITMVQKWPVRQPRP-VKEKLPPNEPLLTGQRVLDTLFPVVKGGTAAIPGP 165 (369)
T ss_pred CEEEEEEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCCCCCC-CCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 37999991589852465699970689846877887077566775-11138999862653568874253214764677668
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH-------CCCCCCCEEEEEEECCCCCHHHH
Q ss_conf 78861158999999988630246678760699995167767899999851-------14674211589972887888999
Q gi|254780617|r 171 RKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKAL-------EDRGALSYSIVVVASASDPAPMQ 243 (509)
Q Consensus 171 ~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l-------~~~~~~~~tvvv~a~a~~~~~~r 243 (509)
T Consensus 166 ~g~GKT~l~-~~i~k~~---------~~dv~Vyv~iGeRg~ev~e~l~~f~el~~~~~g~~~~~rtvvVa~ts~~p~~~r 235 (369)
T cd01134 166 FGCGKTVIQ-QSLSKYS---------NSDIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMPVAAR 235 (369)
T ss_pred CCCCHHHHH-HHHHHCC---------CCCEEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCHHHCEEEEECCCCCCHHHH
T ss_conf 776899999-9998537---------998899999711418999999986774133346641020368742777998899
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCC---CCCCCCC
Q ss_conf 9988766666675420468847996164789999987545303787543337520012467888875045---4458873
Q gi|254780617|r 244 LLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMS---DALGAGS 320 (509)
Q Consensus 244 ~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~~~~---~~~g~GS 320 (509)
T Consensus 236 ~~s~y~g~tiAEyfRd~G~~Vll~~DslsR~A~A~REisl~l~e~P~~egYP~~l~s~l~~l~ERag~~~~~~~~~~~GS 315 (369)
T cd01134 236 EASIYTGITIAEYFRDMGYNVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGARLASFYERAGRVKCLGSPGREGS 315 (369)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCE
T ss_conf 88898999999999968988799807589999998899886389987657193199888899872144323689999811
Q ss_pred EEEEEEEECCCCCCCCCHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCCCHHHC
Q ss_conf 567531003676644311466885406169961501221026654334441220
Q gi|254780617|r 321 LTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRV 374 (509)
Q Consensus 321 iT~~~~v~~~~~D~~~~i~~~~~si~DG~i~l~~~l~~~g~~Paid~~~S~SRv 374 (509)
T Consensus 316 iT~~~~V~~~ggD~s~pI~~~~~si~d~~i~L~~~La~~g~~PAId~~~S~Sry 369 (369)
T cd01134 316 VTIVGAVSPPGGDFSEPVTQATLRIVQVFWGLDKKLAQRRHFPSINWLISYSKY 369 (369)
T ss_pred EEEEEEEECCCCCCCCCHHHHHHHHHCEEEEECHHHHHCCCCCCCCCCCCCCCC
T ss_conf 778989975698867757888876621588985889867999971874366588