HHsearch alignment for GI: 254780617 and conserved domain: cd01135

>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=100.00  E-value=0  Score=737.99  Aligned_cols=275  Identities=28%  Similarity=0.458  Sum_probs=262.3

Q ss_pred             EEEEECCHHHHHCCCCHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHCCHHHHHCCCCCCCCCEEEEECCCCC
Q ss_conf             78866794698300030023144664445444100101357731126600144416023310111156833655247788
Q gi|254780617|r   94 IVDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKT  173 (509)
Q Consensus        94 ~~~vpvG~~lLGRVvD~lG~PlDg~g~i~~~~~~~i~~~~p~~~~R~~i~~~l~TGI~~ID~l~pigrGQR~~I~g~~g~  173 (509)
T Consensus         1 sl~VpVG~~lLGRVvd~lG~PiDg~~~i~~~~~~~i~~~ap~p~~R~~v~e~l~TGIkaID~l~pig~GQR~gIfgg~Gv   80 (276)
T cd01135           1 TLKVPVSEDMLGRIFNGSGKPIDGGPEILAEEYLDINGPPINPVARIYPEEMIQTGISAIDGMNTLVRGQKIPIFSGSGL   80 (276)
T ss_pred             CEEEECCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCHHCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCC
T ss_conf             96987477733747458833127999999986402458997804406778632258535405467236766332057886


Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             61158999999988630246678760699995167767899999851146742115899728878889999988766666
Q gi|254780617|r  174 GKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAM  253 (509)
Q Consensus       174 GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tvvv~a~a~~~~~~r~~ap~~a~ai  253 (509)
T Consensus        81 GKs~L~~~i~~~~~~-~---~~~~~~v~V~~~IGer~rev~e~~~~l~~~~~l~~tvvv~ata~~~p~~r~~a~~~a~ai  156 (276)
T cd01135          81 PHNELAAQIARQAGV-V---GEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIITPRMALTT  156 (276)
T ss_pred             CHHHHHHHHHHHHHH-C---CCCCCCEEEEEECCEEHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             367899999998775-1---368873599961555325799999998716651210146634889768887888887789


Q ss_pred             HHHHH-CCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCC
Q ss_conf             67542-04688479961647899999875453037875433375200124678888750454458873567531003676
Q gi|254780617|r  254 GEYFR-DNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVN  332 (509)
Q Consensus       254 AEyfr-~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~~~~~~~g~GSiT~~~~v~~~~~  332 (509)
T Consensus       157 AEyFr~~~Gk~VLl~~D~ltr~A~A~REisl~~g~~P~~~gYp~~vf~~l~~l~ERag~~~~~--~GSITa~~~v~~~~d  234 (276)
T cd01135         157 AEYLAYEKGKHVLVILTDMTNYAEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVEGR--NGSITQIPILTMPND  234 (276)
T ss_pred             HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC--CEEEEEEEEEECCCC
T ss_conf             999887369977999456889999999999864899987888850998867888722467999--801899989944798


Q ss_pred             CCCCCHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCCCHHHC
Q ss_conf             644311466885406169961501221026654334441220
Q gi|254780617|r  333 DVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRV  374 (509)
Q Consensus       333 D~~~~i~~~~~si~DG~i~l~~~l~~~g~~Paid~~~S~SRv  374 (509)
T Consensus       235 D~~~pi~~~~~si~DG~i~Lsr~la~~G~~PAId~~~S~SRv  276 (276)
T cd01135         235 DITHPIPDLTGYITEGQIVLDRQLHNRGIYPPINVLPSLSRL  276 (276)
T ss_pred             CCCCCHHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCCCCC
T ss_conf             867766777765604599997999967999970875576679