HHsearch alignment for GI: 254780617 and conserved domain: cd01394

>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

Probab=97.76  E-value=0.00069  Score=47.27  Aligned_cols=113  Identities=20%  Similarity=0.240  Sum_probs=64.8

Q ss_pred             HHCCHHHHHCCCC--CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCC--CHHHHHHHHHHHC
Q ss_conf             4416023310111--15683365524778861158999999988630246678760699995167--7678999998511
Q gi|254780617|r  146 LSTGIKAIDSLIP--IGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQ--KRSSVARFVKALE  221 (509)
Q Consensus       146 l~TGI~~ID~l~p--igrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGe--r~~ev~~~~~~l~  221 (509)
T Consensus         1 IsTG~~~lD~vLgGGi~~G~it~i~G~pG~GKStl~lq~a~~~~~~g--------~~v~Yid-tE~~~~er~~qi~~~~-   70 (218)
T cd01394           1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQG--------KKVAYID-TEGLSSERFRQIAGDR-   70 (218)
T ss_pred             CCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC--------CEEEEEE-CCCCCCHHHHHHHHHH-
T ss_conf             99880789998569987887999989999849999999999986369--------8699996-6556769999998753-


Q ss_pred             CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHH
Q ss_conf             4674211589972887888999998876666667542046884799616478999
Q gi|254780617|r  222 DRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAV  276 (509)
Q Consensus       222 ~~~~~~~tvvv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~  276 (509)
T Consensus        71 -~~~~~~~i~v~~~~~~~~~~~------~i~~~~~~~~~-~~~lvViDSi~tl~~  117 (218)
T cd01394          71 -PERAASSIIVFEPMDFNEQGR------AIQETETFADE-KVDLVVVDSATALYR  117 (218)
T ss_pred             -HHHHHCCCEEECCCCHHHHHH------HHHHHHHHHHC-CCCEEEEECCHHHHH
T ss_conf             -666530514626787688999------99999976414-772999914045545