HHsearch alignment for GI: 254780617 and conserved domain: cd03229
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.79 E-value=0.11 Score=31.25 Aligned_cols=32 Identities=16% Similarity=0.415 Sum_probs=25.0
Q ss_pred HHHH-CCCCCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 2331-01111568336552477886115899999
Q gi|254780617|r 151 KAID-SLIPIGRGQRELIIGDRKTGKTSIILDTF 183 (509)
Q Consensus 151 ~~ID-~l~pigrGQR~~I~g~~g~GKt~l~~~~I 183 (509)
T Consensus 14 ~~l~~vs~~i~~Ge~~~ivGpSG~GKSTll-r~i 46 (178)
T cd03229 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLL-RCI 46 (178)
T ss_pred EEECCCEEEECCCCEEEEECCCCCHHHHHH-HHH
T ss_conf 998370769889989999999998399999-999