HHsearch alignment for GI: 254780617 and conserved domain: cd03238
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.41 E-value=0.073 Score=32.59 Aligned_cols=36 Identities=11% Similarity=0.249 Sum_probs=27.1
Q ss_pred HHHHH-CCCCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 02331-0111156833655247788611589999999
Q gi|254780617|r 150 IKAID-SLIPIGRGQRELIIGDRKTGKTSIILDTFLN 185 (509)
Q Consensus 150 I~~ID-~l~pigrGQR~~I~g~~g~GKt~l~~~~I~n 185 (509)
T Consensus 8 ~~aL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~~~~~ 44 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred EECCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 3546754878889989999999999899999988876