HHsearch alignment for GI: 254780617 and conserved domain: cd03248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=92.83 E-value=0.067 Score=32.87 Aligned_cols=30 Identities=17% Similarity=0.410 Sum_probs=24.6
Q ss_pred HCCCCCCCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf 1011115683365524778861158999999
Q gi|254780617|r 154 DSLIPIGRGQRELIIGDRKTGKTSIILDTFL 184 (509)
Q Consensus 154 D~l~pigrGQR~~I~g~~g~GKt~l~~~~I~ 184 (509)
T Consensus 32 ~is~~i~~Ge~vaIvG~sGsGKSTL~-~ll~ 61 (226)
T cd03248 32 DVSFTLHPGEVTALVGPSGSGKSTVV-ALLE 61 (226)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHH-HHHH
T ss_conf 53899829999999999998499999-9996