HHsearch alignment for GI: 254780617 and conserved domain: cd03271
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=90.76 E-value=0.17 Score=29.97 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.2
Q ss_pred CCCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 111568336552477886115899
Q gi|254780617|r 157 IPIGRGQRELIIGDRKTGKTSIIL 180 (509)
Q Consensus 157 ~pigrGQR~~I~g~~g~GKt~l~~ 180 (509)
T Consensus 16 l~i~~G~~~aIiG~sGsGKSTLl~ 39 (261)
T cd03271 16 VDIPLGVLTCVTGVSGSGKSSLIN 39 (261)
T ss_pred EEECCCCEEEEECCCCCCHHHHHH
T ss_conf 898899999998799986999999