HHsearch alignment for GI: 254780617 and conserved domain: cd03294
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.14 E-value=0.089 Score=31.97 Aligned_cols=29 Identities=21% Similarity=0.437 Sum_probs=24.2
Q ss_pred HCCCCCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 101111568336552477886115899999
Q gi|254780617|r 154 DSLIPIGRGQRELIIGDRKTGKTSIILDTF 183 (509)
Q Consensus 154 D~l~pigrGQR~~I~g~~g~GKt~l~~~~I 183 (509)
T Consensus 42 ~vsl~i~~GE~~~ivG~SGsGKSTLL-r~i 70 (269)
T cd03294 42 DVSLDVREGEIFVIMGLSGSGKSTLL-RCI 70 (269)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHH-HHH
T ss_conf 74758889999999989984899999-999