HHsearch alignment for GI: 254780617 and conserved domain: pfam00006
>pfam00006 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain. This family includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Probab=100.00 E-value=0 Score=543.06 Aligned_cols=213 Identities=49% Similarity=0.753 Sum_probs=207.3
Q ss_pred CCHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 16023310111156833655247788611589999999886302466787606999951677678999998511467421
Q gi|254780617|r 148 TGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALS 227 (509)
Q Consensus 148 TGI~~ID~l~pigrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~ 227 (509)
T Consensus 1 TGi~~ID~l~pig~GQr~~I~g~~g~GKt~l~~~i~~~~~~---------~~~~V~~~iGer~~ev~~~~~~~~~~~~~~ 71 (213)
T pfam00006 1 TGIRAIDLLLPIGKGQRIGIFGGSGTGKTVLLGMIARNAKA---------DVVEVYVLIGERGREVAEFIEELLGEGALK 71 (213)
T ss_pred CCCCEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH---------CCCEEEEECCCCHHHHHHHHHHHHCCCCCC
T ss_conf 98400020166457888778789999889999999985661---------893599813777799999999752137665
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 15899728878889999988766666675420468847996164789999987545303787543337520012467888
Q gi|254780617|r 228 YSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLE 307 (509)
Q Consensus 228 ~tvvv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~E 307 (509)
T Consensus 72 ~t~vv~~~~d~~~~~r~~~~~~a~~~AEyf~~~G~dVlvi~Dsltr~A~A~reis~~~g~~p~~~gyp~~~~~~~~~l~E 151 (213)
T pfam00006 72 RTVVVAATSDEPPAERYLAPYTALTIAEYFRDQGKDVLLLLDSLTRFARALREISLLLGEPPGREGYPGSLFSDLARLLE 151 (213)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 06999846889878999999999999999997699689983780599999876500147998545639178888799998
Q ss_pred HHHHCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCCCHH
Q ss_conf 87504544588735675310036766443114668854061699615012210266543344412
Q gi|254780617|r 308 RAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVS 372 (509)
Q Consensus 308 Ra~~~~~~~g~GSiT~~~~v~~~~~D~~~~i~~~~~si~DG~i~l~~~l~~~g~~Paid~~~S~S 372 (509)
T Consensus 152 Rag~~~---~~GSiT~l~tv~~~~~d~~dpi~~~~~~~~dg~ivLsr~la~~g~~PAId~~~S~S 213 (213)
T pfam00006 152 RAGKVE---GGGSITALPTVLVPGGDITDPIPDNTISITDGQIVLSRELAERGIYPAIDILLSVS 213 (213)
T ss_pred HHHCCC---CCCCEEEEEEEEECCCCCCCCHHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCCC
T ss_conf 753468---88634788899804888675156765211355999968999679999728755789