HHsearch alignment for GI: 254780617 and conserved domain: pfam06745

>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=98.53  E-value=1.4e-06  Score=66.92  Aligned_cols=189  Identities=20%  Similarity=0.172  Sum_probs=104.0

Q ss_pred             HHCCHHHHHCCCC--CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH---
Q ss_conf             4416023310111--15683365524778861158999999988630246678760699995167767899999851---
Q gi|254780617|r  146 LSTGIKAIDSLIP--IGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKAL---  220 (509)
Q Consensus       146 l~TGI~~ID~l~p--igrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l---  220 (509)
T Consensus         1 i~TGi~~LD~~l~GGi~~gs~~LI~G~pGsGKT~la~qfl~~ga~~~-------ge~~lYis~ee~~~~l~~~~~~~g~~   73 (231)
T pfam06745         1 VKTGIPGLDEILKGGIPEGRVVLITGGPGTGKTIFGLQFLYNGALEY-------GEPGVYVTLEEPPEDLRENAKSFGWD   73 (231)
T ss_pred             CCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC-------CCCEEEEEECCCHHHHHHHHHHCCCC
T ss_conf             98895568863169982996999985897259999999999999865-------89689998137999999999982998


Q ss_pred             ----CCCCCCCEEEEEEECCCCCHHHHHH----HHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             ----1467421158997288788899999----88766666675420468847996164789999987545303787543
Q gi|254780617|r  221 ----EDRGALSYSIVVVASASDPAPMQLL----APFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGRE  292 (509)
Q Consensus       221 ----~~~~~~~~tvvv~a~a~~~~~~r~~----ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~  292 (509)
T Consensus        74 ~~~~~~~g~---l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~vVIDsit~l~~~~~~---------~--  138 (231)
T pfam06745        74 LEKLEEEGK---LAIIDASTSGIGIAEVKGRFDLEELIERLREAIREIGAK-RVVIDSITTLFYLLKP---------A--  138 (231)
T ss_pred             HHHHHHCCC---EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-EEEEECCHHHHHCCCH---------H--
T ss_conf             589864696---789862544222100112279999999999999971998-8999764164005889---------9--


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCEEEEECCHHHHCCCCCCCC
Q ss_conf             337520012467888875045445887356753100367664431146688540616996150122102665433
Q gi|254780617|r  293 AYPGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINI  367 (509)
Q Consensus       293 gyp~~vf~~~s~l~ERa~~~~~~~g~GSiT~~~~v~~~~~D~~~~i~~~~~si~DG~i~l~~~l~~~g~~Paid~  367 (509)
T Consensus       139 ----~~r~~l~~l~~~lk---~~----g~t~l~t~e~~~~~~~~~~~~~~~~l~D~vI~L~~~~~~~~~~R~l~I  202 (231)
T pfam06745       139 ----MAREILRRLKRVLK---KL----GVTAIFTSEKPSGEGGIGGYGVEEFVVDGVIRLDLKEIEGELVRTIEI  202 (231)
T ss_pred             ----HHHHHHHHHHHHHH---HC----CCEEEEEEEECCCCCCCCCCCHHHHEEEEEEEEEEECCCCEEEEEEEE
T ss_conf             ----99999999999999---76----991999982125777656763011100369999988249989999999