HHsearch alignment for GI: 254780617 and conserved domain: pfam07088
>pfam07088 GvpD GvpD gas vesicle protein. This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation.
Probab=93.25 E-value=0.27 Score=28.49 Aligned_cols=161 Identities=22% Similarity=0.309 Sum_probs=85.3
Q ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 01111568336552477886115899999998863024667876069999516776789999985114674211589972
Q gi|254780617|r 155 SLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVA 234 (509)
Q Consensus 155 ~l~pigrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tvvv~a 234 (509)
T Consensus 3 rFF~~~~G~tLlIkG~PGTGKTlfTl~~L-d~l------~~~~~v--lYvStRvdqd~V~e~y--f~~~~~~~~t~ilD~ 71 (484)
T pfam07088 3 RFFDGDFGKTLLINGAPGTGKTLFTIRGL-DVL------RRHHDV--LYVSTRVDQETVHEMY--FEGHGSLDKTAILDL 71 (484)
T ss_pred CCCCCCCCCEEEEECCCCCCCEEEEEEHH-HHH------HCCCCE--EEEEECCCHHHHHHHH--HHCCCCCCHHHHHHH
T ss_conf 00158998479993699987238985737-788------516976--9996323778887740--200255575665453
Q ss_pred CCCCCHHHHH---HHHHHHH---HHHHHHH---CCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 8878889999---9887666---6667542---04688479961647899999875453037875433375200124678
Q gi|254780617|r 235 SASDPAPMQL---LAPFAGC---AMGEYFR---DNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRL 305 (509)
Q Consensus 235 ~a~~~~~~r~---~ap~~a~---aiAEyfr---~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l 305 (509)
T Consensus 72 ~-qD-~f~l~~~~~vP~~~l~l~sl~e~vd~i~a~~er~~Ia~DSW~~i~eyLa~----------r~d~pe~f~~~~n~l 139 (484)
T pfam07088 72 L-QD-PFILPTDVDVPFEKLNLDSLLEWVDAINAAGERLTIAFDSWELIYEYLAE----------RHDIPPDILTVTNQL 139 (484)
T ss_pred C-CC-CHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHH----------HHCCCHHHHHHHHHH
T ss_conf 0-26-01063111366542355579999987641245747998328999998777----------616846675666567
Q ss_pred HHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHH
Q ss_conf 8887504544588735675310036766443114668854
Q gi|254780617|r 306 LERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISI 345 (509)
Q Consensus 306 ~ERa~~~~~~~g~GSiT~~~~v~~~~~D~~~~i~~~~~si 345 (509)
T Consensus 140 v~lar~----~--g-~~Li~v~E~~~~~~LeYivDGVVtL 172 (484)
T pfam07088 140 VALARG----S--G-ARLVLVLETAQNSRLEYIVDGVVTL 172 (484)
T ss_pred HHHHHH----C--C-CEEEEEEECCCCCCCHHEEEEEEEE
T ss_conf 776652----5--9-4599998236677512123038999