HHsearch alignment for GI: 254780617 and conserved domain: pfam08423
>pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
Probab=96.55 E-value=0.0073 Score=39.84 Aligned_cols=132 Identities=17% Similarity=0.198 Sum_probs=71.1
Q ss_pred CCCCCCCHHHHHCCHHHHHCCCC--CCCCCEEEEECCCCCCCHHHHHHHHHHH-HHHCCCCCCCCCCEEEEEEC--CCCH
Q ss_conf 31126600144416023310111--1568336552477886115899999998-86302466787606999951--6776
Q gi|254780617|r 136 IIQRQSVCEPLSTGIKAIDSLIP--IGRGQRELIIGDRKTGKTSIILDTFLNQ-KSSHDKGSEKDKVYCIYVAI--GQKR 210 (509)
Q Consensus 136 ~~~R~~i~~~l~TGI~~ID~l~p--igrGQR~~I~g~~g~GKt~l~~~~I~nq-~~~~~~~~~~~~v~~V~~~I--Ger~ 210 (509)
T Consensus 15 ~~~~r~~~~~isTg~~~LD~lLgGGi~~g~ITEi~G~~gsGKTQlc~qlav~~qlp~~~gg-~~--g~vvyIDTEg~f~~ 91 (261)
T pfam08423 15 LHQRRSEVIRITTGSKELDKLLGGGIETGSITEVFGEFRTGKTQLCHTLCVTCQLPLEMGG-GE--GKALYIDTEGTFRP 91 (261)
T ss_pred HHHHHCCCCEECCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCHHHHCC-CC--CEEEEEECCCCCCH
T ss_conf 9997548735778987899873798667729999899888789999999999407096569-99--72899936888698
Q ss_pred HHHHHHHHHHC--CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHH
Q ss_conf 78999998511--46742115899728878889999988766666675420468847996164789999
Q gi|254780617|r 211 SSVARFVKALE--DRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVA 277 (509)
Q Consensus 211 ~ev~~~~~~l~--~~~~~~~tvvv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a 277 (509)
T Consensus 92 eRl~qia~~~~~~~~~~L~~I~v-~r~-~~~-~~~~~~l---~~~~~~~-~~~~v~LvVvDSiaalfR~ 153 (261)
T pfam08423 92 ERIVAIAERFGLDPEEVLDNIAY-ARA-YNT-EHQMQLL---LQAAAMM-SESRFALLIVDSATALYRT 153 (261)
T ss_pred HHHHHHHHHHCCCHHHHHHHCEE-CCC-CCH-HHHHHHH---HHHHHHH-HCCCCEEEEEECCCEEEEE
T ss_conf 99999999829997898753314-168-998-9999999---9999987-3178349998324002333