RPSBLAST alignment for GI: 254780617 and conserved domain: TIGR01039
>gnl|CDD|130111 TIGR01039, atpD, ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit. Length = 461
Score = 115 bits (289), Expect = 3e-26
Identities = 105/399 (26%), Positives = 169/399 (42%), Gaps = 29/399 (7%)
Query: 63 ALNLEV------DNVGVVILGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPID 116
L LEV D V + +GS + G V TG + VPVG E LGR+ + LG PID
Sbjct: 38 ELTLEVAQHLGDDTVRTIAMGSTDGLVRGLEVIDTGAPISVPVGKETLGRIFNVLGEPID 97
Query: 117 GKGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKT 176
KGPI ++R AP ++ + E L TGIK ID L P +G + + G GKT
Sbjct: 98 EKGPIPAKERWPIHRKAPSFEEQSTKVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKT 157
Query: 177 SIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASA 236
+I + N H Y ++ +G++ +++ G + + +V
Sbjct: 158 VLIQELINNIAKEHGG-------YSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQM 210
Query: 237 SDPAPMQLLAPFAGCAMGEYFRD-NGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYP 295
++P ++ G M EYFRD G L+ D++ + A ++S LL R P Y
Sbjct: 211 NEPPGARMRVALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQ 270
Query: 296 GDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETE 355
+ L ER GS+T++ + +D++ P + D L +
Sbjct: 271 PTLATEMGELQERITSTK----TGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRK 326
Query: 356 LFYQGIRPAINIGLSVSRVGSAAQV-KAMKQVSGAVKGELAQYREMSSFSKF--SSDLDS 412
+ GI PA++ S SR+ + V + V+ V+ L +Y+E+ +L
Sbjct: 327 IAELGIYPAVDPLDSTSRLLDPSVVGEEHYDVARGVQQILQRYKELQDIIAILGMDELSE 386
Query: 413 STQKFLSKGERLTELLKQPQFSPLAMEEQVVMIFAGISG 451
+ + + R+ L QP F V +F G G
Sbjct: 387 EDKLTVERARRIQRFLSQPFF--------VAEVFTGQPG 417