RPSBLAST alignment for GI: 254780617 and conserved domain: TIGR01039

>gnl|CDD|130111 TIGR01039, atpD, ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit. Length = 461
 Score =  115 bits (289), Expect = 3e-26
 Identities = 105/399 (26%), Positives = 169/399 (42%), Gaps = 29/399 (7%)

Query: 63  ALNLEV------DNVGVVILGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPID 116
            L LEV      D V  + +GS   +  G  V  TG  + VPVG E LGR+ + LG PID
Sbjct: 38  ELTLEVAQHLGDDTVRTIAMGSTDGLVRGLEVIDTGAPISVPVGKETLGRIFNVLGEPID 97

Query: 117 GKGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKT 176
            KGPI  ++R      AP   ++ +  E L TGIK ID L P  +G +  + G    GKT
Sbjct: 98  EKGPIPAKERWPIHRKAPSFEEQSTKVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKT 157

Query: 177 SIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASA 236
            +I +   N    H         Y ++  +G++          +++ G +  + +V    
Sbjct: 158 VLIQELINNIAKEHGG-------YSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQM 210

Query: 237 SDPAPMQLLAPFAGCAMGEYFRD-NGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYP 295
           ++P   ++     G  M EYFRD  G   L+  D++ +   A  ++S LL R P    Y 
Sbjct: 211 NEPPGARMRVALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQ 270

Query: 296 GDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETE 355
             +      L ER          GS+T++  +    +D++   P    +  D    L  +
Sbjct: 271 PTLATEMGELQERITSTK----TGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRK 326

Query: 356 LFYQGIRPAINIGLSVSRVGSAAQV-KAMKQVSGAVKGELAQYREMSSFSKF--SSDLDS 412
           +   GI PA++   S SR+   + V +    V+  V+  L +Y+E+          +L  
Sbjct: 327 IAELGIYPAVDPLDSTSRLLDPSVVGEEHYDVARGVQQILQRYKELQDIIAILGMDELSE 386

Query: 413 STQKFLSKGERLTELLKQPQFSPLAMEEQVVMIFAGISG 451
             +  + +  R+   L QP F        V  +F G  G
Sbjct: 387 EDKLTVERARRIQRFLSQPFF--------VAEVFTGQPG 417