RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780617|ref|YP_003065030.1| F0F1 ATP synthase subunit
alpha [Candidatus Liberibacter asiaticus str. psy62]
(509 letters)
>gnl|CDD|181753 PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.
Length = 502
Score = 966 bits (2501), Expect = 0.0
Identities = 330/509 (64%), Positives = 413/509 (81%), Gaps = 8/509 (1%)
Query: 1 MDIHAAEISDILRKRIKDFGNDSEFSEIGRVLSIGDGIARVYGLNNIRAGEMVQFSHGVY 60
M I+ EIS I++++I++F ++E E+G V+S+GDGIARVYGL+N+ AGE+++F GVY
Sbjct: 1 MQINPEEISAIIKQQIENFDAEAEVEEVGTVISVGDGIARVYGLDNVMAGELLEFPGGVY 60
Query: 61 GMALNLEVDNVGVVILGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGP 120
G+ALNLE DNVG VILG Y++I EGD VKRTGRI++VPVG LLGRVV+ LG PIDGKGP
Sbjct: 61 GIALNLEEDNVGAVILGDYEDIKEGDTVKRTGRILEVPVGEALLGRVVNPLGQPIDGKGP 120
Query: 121 IKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIIL 180
I+ + E APG+I R+SV EPL TGIKAID++IPIGRGQRELIIGDR+TGKT+I +
Sbjct: 121 IEATETRPVERKAPGVIDRKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAIAI 180
Query: 181 DTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPA 240
DT +NQK V CIYVAIGQK S+VA+ V+ LE+ GA+ Y+IVV A+ASDPA
Sbjct: 181 DTIINQK--------GKDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPA 232
Query: 241 PMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFY 300
P+Q LAP+AGCAMGEYF DNG ALI YDDL K AVAYRQLSLLLRRPPGREAYPGDVFY
Sbjct: 233 PLQYLAPYAGCAMGEYFMDNGKDALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFY 292
Query: 301 LHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQG 360
LHSRLLERAAK+SD LG GSLTALP+IETQ DVSAYIPTNVISITDGQIFLE++LF G
Sbjct: 293 LHSRLLERAAKLSDELGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFNAG 352
Query: 361 IRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYREMSSFSKFSSDLDSSTQKFLSK 420
IRPAIN+G+SVSRVG AAQ+KAMK+V+G ++ +LAQYRE+ +F++F SDLD +T+ L +
Sbjct: 353 IRPAINVGISVSRVGGAAQIKAMKKVAGTLRLDLAQYRELEAFAQFGSDLDEATRAQLER 412
Query: 421 GERLTELLKQPQFSPLAMEEQVVMIFAGISGCLDEVAVSQVRKFETNFLSHMRVSSQDIL 480
G+RL ELLKQPQ+SPL +EEQVV+++AG +G LD+V V +VR+FE L+++R + D+L
Sbjct: 413 GQRLVELLKQPQYSPLPVEEQVVILYAGTNGYLDDVPVEKVRRFEAELLAYLRSNHADLL 472
Query: 481 EDIRKQKVLTDDIRSKLINEIKVFLEDFN 509
E+IR+ K L+D+I +KL I+ F + F
Sbjct: 473 EEIRETKDLSDEIEAKLKAAIEEFKKTFA 501
>gnl|CDD|162134 TIGR00962, atpA, proton translocating ATP synthase, F1 alpha
subunit. The sequences of ATP synthase F1 alpha and
beta subunits are related and both contain a
nucleotide-binding site for ATP and ADP. They have a
common amino terminal domain but vary at the C-terminus.
The beta chain has catalytic activity, while the alpha
chain is a regulatory subunit. The alpha-subunit
contains a highly conserved adenine-specific
noncatalytic nucleotide-binding domain. The conserved
amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton
translocating ATP synthase F1, alpha subunit is
homologous to proton translocating ATP synthase
archaeal/vacuolar(V1), B subunit.
Length = 501
Score = 788 bits (2037), Expect = 0.0
Identities = 320/506 (63%), Positives = 401/506 (79%), Gaps = 8/506 (1%)
Query: 3 IHAAEISDILRKRIKDFGNDSEFSEIGRVLSIGDGIARVYGLNNIRAGEMVQFSHGVYGM 62
+ EIS+++++ IK+F D E E+G V+S+GDGIARVYGL N+ +GE+++F GV G+
Sbjct: 2 LKLEEISELIKQEIKNFEKDIEMEEVGTVVSVGDGIARVYGLENVMSGELIEFEGGVQGI 61
Query: 63 ALNLEVDNVGVVILGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGPIK 122
ALNLE D+VG VI+G Y I EG VKRTGRI+ VPVG LLGRVV+ALG PIDGKGPI
Sbjct: 62 ALNLEEDSVGAVIMGDYSNIREGSTVKRTGRILKVPVGDGLLGRVVNALGQPIDGKGPID 121
Query: 123 CEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDT 182
++ E APG+++R+SV EPL TGIKAID++IPIGRGQRELIIGDR+TGKT++ +DT
Sbjct: 122 SDEFRPIEKIAPGVMERKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAVAIDT 181
Query: 183 FLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPAPM 242
+NQK S VYC+YVAIGQK S+VA+ V+ LE+ GA+ Y+IVV A+ASD A +
Sbjct: 182 IINQKDSD--------VYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASL 233
Query: 243 QLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLH 302
Q LAP+ GC M EYFRDNG HALI YDDL KHAVAYRQ+SLLLRRPPGREAYPGDVFYLH
Sbjct: 234 QYLAPYTGCTMAEYFRDNGKHALIIYDDLSKHAVAYRQISLLLRRPPGREAYPGDVFYLH 293
Query: 303 SRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIR 362
SRLLERAAK++D G GSLTALP+IETQ DVSAYIPTNVISITDGQIFLE++LF GIR
Sbjct: 294 SRLLERAAKLNDEKGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFNSGIR 353
Query: 363 PAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYREMSSFSKFSSDLDSSTQKFLSKGE 422
PAIN+GLSVSRVG AAQ+KAMKQV+G+++ ELAQYRE+ +FS+F+SDLD +T+ L +G+
Sbjct: 354 PAINVGLSVSRVGGAAQIKAMKQVAGSLRLELAQYRELEAFSQFASDLDEATKAQLERGK 413
Query: 423 RLTELLKQPQFSPLAMEEQVVMIFAGISGCLDEVAVSQVRKFETNFLSHMRVSSQDILED 482
RL ELLKQPQ+ PL +EEQVV+++AG G LD++ V +VRKFE L ++ + DILE+
Sbjct: 414 RLVELLKQPQYKPLPVEEQVVILYAGTKGYLDDIPVDKVRKFEQELLDYLDANHPDILEE 473
Query: 483 IRKQKVLTDDIRSKLINEIKVFLEDF 508
I +K LT+++ KL +K F + F
Sbjct: 474 INTKKKLTEELEDKLKEALKNFKKTF 499
>gnl|CDD|183987 PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional.
Length = 502
Score = 727 bits (1879), Expect = 0.0
Identities = 268/509 (52%), Positives = 352/509 (69%), Gaps = 8/509 (1%)
Query: 1 MDIHAAEISDILRKRIKDFGNDSEFSEIGRVLSIGDGIARVYGLNNIRAGEMVQFSHGVY 60
M +A E +R+RI + + EIGRV S+GDGIA V GL + E+++F G
Sbjct: 1 MKSNADEWLARIRQRIARYEPQPDAREIGRVESVGDGIAFVSGLPDAALDELLRFEGGSR 60
Query: 61 GMALNLEVDNVGVVILGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGP 120
G A NLE + VG V+L +I G V+RTGR+++VPVG LLGRV+D LG P+DG GP
Sbjct: 61 GFAFNLEEELVGAVLLDDTADILAGTEVRRTGRVLEVPVGDGLLGRVIDPLGRPLDGGGP 120
Query: 121 IKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIIL 180
++ R E AP II+R V EPL TGIK +D+LIPIGRGQRELIIGDR+TGKT+I +
Sbjct: 121 LQATARRPLERPAPAIIERDFVTEPLQTGIKVVDALIPIGRGQRELIIGDRQTGKTAIAI 180
Query: 181 DTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPA 240
D +NQK S V C+YVAIGQK S+VAR ++ L + GAL Y+ VVVA ASDP
Sbjct: 181 DAIINQKDS--------DVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPP 232
Query: 241 PMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFY 300
+Q LAPFAGCA+ EYFRD G ALI YDDL KHA AYR+LSLLLRRPPGREAYPGD+FY
Sbjct: 233 GLQYLAPFAGCAIAEYFRDQGQDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFY 292
Query: 301 LHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQG 360
LHSRLLERAAK+S LG GSLTALP+IET ++SAYIPTN+ISITDGQI+L+++LF G
Sbjct: 293 LHSRLLERAAKLSPELGGGSLTALPIIETLAGELSAYIPTNLISITDGQIYLDSDLFAAG 352
Query: 361 IRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYREMSSFSKFSSDLDSSTQKFLSK 420
RPA+++GLSVSRVG AQ A+++ SG ++ + AQ+ E+ +F++F LD+ TQK +++
Sbjct: 353 QRPAVDVGLSVSRVGGKAQHPAIRKESGRLRLDYAQFLELEAFTRFGGLLDAGTQKQITR 412
Query: 421 GERLTELLKQPQFSPLAMEEQVVMIFAGISGCLDEVAVSQVRKFETNFLSHMRVSSQDIL 480
G RL ELLKQP+FSPL++EEQ+ +++A G LD V ++ ++ FE L + +
Sbjct: 413 GRRLRELLKQPRFSPLSVEEQIALLYALNEGLLDAVPLANIQAFEERLLEKLDARFAALS 472
Query: 481 EDIRKQKVLTDDIRSKLINEIKVFLEDFN 509
+ + L + + L ++ E F
Sbjct: 473 LALESPRELDEAWLAALEEILREAGERFA 501
>gnl|CDD|132367 TIGR03324, alt_F1F0_F1_al, alternate F1F0 ATPase, F1 subunit alpha.
A small number of taxonomically diverse prokaryotic
species, including Methanosarcina barkeri, have what
appears to be a second ATP synthase, in addition to the
normal F1F0 ATPase in bacteria and A1A0 ATPase in
archaea. These enzymes use ion gradients to synthesize
ATP, and in principle may run in either direction. This
model represents the F1 alpha subunit of this apparent
second ATP synthase.
Length = 497
Score = 535 bits (1381), Expect = e-153
Identities = 233/473 (49%), Positives = 327/473 (69%), Gaps = 8/473 (1%)
Query: 27 EIGRVLSIGDGIARVYGLNNIRAGEMVQFSHGVYGMALNLEVDNVGVVILGSYKEISEGD 86
E+G V S+ GIARV+GL + E+++F G+ G+A N++ D VGVV+LG Y + GD
Sbjct: 27 EVGTVESVSTGIARVHGLPGVGFEELLRFPGGLLGIAFNVDEDEVGVVLLGEYSHLQAGD 86
Query: 87 IVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVCEPL 146
V+RTGR++DVPVG LLGRVVD LG P+DG GP+ R E AP I+ R V PL
Sbjct: 87 EVERTGRVMDVPVGDGLLGRVVDPLGRPLDGGGPLASSPRLPIERPAPPIMDRAPVTVPL 146
Query: 147 STGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAI 206
TG+K ID+LIPIGRGQRELI+GDR+TGKT+I +DT LNQK + V CIY AI
Sbjct: 147 QTGLKVIDALIPIGRGQRELILGDRQTGKTAIAIDTILNQKGRN--------VLCIYCAI 198
Query: 207 GQKRSSVARFVKALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALI 266
GQ+ S+VA+ V L + GA+ Y+IVVV +DP +Q +AP+A ++GE+F + G LI
Sbjct: 199 GQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPYAATSIGEHFMEQGRDVLI 258
Query: 267 AYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALPV 326
YDDL +HA AYR+LSLLLRRPPGREA+PGD+FY+HSRLLER+ +++ LG GSLTALP+
Sbjct: 259 VYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYVHSRLLERSTHLNEELGGGSLTALPI 318
Query: 327 IETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQV 386
IET+ ++SAYIPTN+ISITDGQI+L LF G+ PA+++G SVSRVG AQ+ A + V
Sbjct: 319 IETEAQNISAYIPTNLISITDGQIYLSPTLFELGVLPAVDVGKSVSRVGGKAQLAAYRAV 378
Query: 387 SGAVKGELAQYREMSSFSKFSSDLDSSTQKFLSKGERLTELLKQPQFSPLAMEEQVVMIF 446
+G +K AQ+ E+ +F++F + LD +T+K + G R+ LKQ Q SPL + +Q+ ++
Sbjct: 379 AGDLKLAYAQFEELETFARFGARLDENTRKTIEHGRRIRACLKQTQSSPLTVPQQIAILL 438
Query: 447 AGISGCLDEVAVSQVRKFETNFLSHMRVSSQDILEDIRKQKVLTDDIRSKLIN 499
A +G D V + + + E+ + + D+ E ++ K L+D+ R ++++
Sbjct: 439 ALTNGLFDGVDLDAMPEAESAIRAAVTSLPADLRERLQSGKKLSDEDREQILD 491
>gnl|CDD|140212 PTZ00185, PTZ00185, ATPase alpha subunit; Provisional.
Length = 574
Score = 393 bits (1011), Expect = e-110
Identities = 210/428 (49%), Positives = 286/428 (66%), Gaps = 23/428 (5%)
Query: 52 MVQFSHGVY--GMALNLEVDN-VGVVILGSYKEISEGDIVKRTGRIVDVPVGLELLGRVV 108
M+Q S + G+ NLE D +G++++ + E+ G V TG+++ +PVG +LG+VV
Sbjct: 69 MIQVSPTTFAAGLVFNLEKDGRIGIILMDNITEVQSGQKVMATGKLLYIPVGAGVLGKVV 128
Query: 109 DALGNPIDGKGPIKCEQRS-----------CTEADAPGIIQRQSVCEPLSTGIKAIDSLI 157
+ LG+ + P+ RS +A AP I+ R V L TG KA+D++I
Sbjct: 129 NPLGHEV----PVGLLTRSRALLESEQTLGKVDAGAPNIVSRSPVNYNLLTGFKAVDTMI 184
Query: 158 PIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFV 217
PIGRGQRELI+GDR+TGKTSI + T +NQ + + K+ V IYV+IGQ+ S+VAR
Sbjct: 185 PIGRGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIH 244
Query: 218 KALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVA 277
+ L GAL Y+ V+ A+A++PA +Q LAP++G MGEYF + G H L YDDL K AVA
Sbjct: 245 RLLRSYGALRYTTVMAATAAEPAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVA 304
Query: 278 YRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAY 337
YRQ+SLLLRRPPGREAYPGDVFYLHSRLLERAA +S G GS+TALP++ET NDV+AY
Sbjct: 305 YRQISLLLRRPPGREAYPGDVFYLHSRLLERAAMLSPGKGGGSVTALPIVETLSNDVTAY 364
Query: 338 IPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQY 397
I TNVISITDGQI+L+T+LF G RPA+NIGLSVSRVGS+AQ AMK V+G +KG LA+Y
Sbjct: 365 IVTNVISITDGQIYLDTKLFTGGQRPAVNIGLSVSRVGSSAQNVAMKAVAGKLKGILAEY 424
Query: 398 REMSSFSKFSSDLDSSTQKFLSKGERLTELLKQPQFSPLAMEEQVVMIFAGISGCLDEVA 457
R++++ S S + + + +G R L Q P +V ++A ++G LD+V
Sbjct: 425 RKLAADSVGGSQVQTVP---MIRGARFVALFNQKN--PSFFMNALVSLYACLNGYLDDVK 479
Query: 458 VSQVRKFE 465
V+ + +E
Sbjct: 480 VNYAKLYE 487
>gnl|CDD|180863 PRK07165, PRK07165, F0F1 ATP synthase subunit alpha; Validated.
Length = 507
Score = 307 bits (789), Expect = 3e-84
Identities = 155/419 (36%), Positives = 228/419 (54%), Gaps = 32/419 (7%)
Query: 30 RVLSIGDGIARVYGLNNIRAGEMVQFSH--GVYGMALNLEVDNVGVVILGSYKEISEGDI 87
++ SI D I V G + + + + V ++ D ++I +I D
Sbjct: 4 KIKSIFDYIVEVKGEYDYQQNQFFTLKNNPNVKAFVISATEDKAYLLINNEKGKIKINDE 63
Query: 88 VKRTGRIVDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTE--------ADAPGIIQR 139
+ V E G+++D GN I P S A G++
Sbjct: 64 LIELNNTNKVKTSKEYFGKIIDIDGNIIY---PEAQNPLSKKFLPNTSSIFNLAHGLMTV 120
Query: 140 QSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKV 199
+++ E L TGI AID LIPIG+GQRELIIGDR+TGKT I L+T +NQK+++ K
Sbjct: 121 KTLNEQLYTGIIAIDLLIPIGKGQRELIIGDRQTGKTHIALNTIINQKNTNVK------- 173
Query: 200 YCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGE---Y 256
CIYVAIGQKR +++R + L++ AL +I++ A ++ P Q LAP+ A E Y
Sbjct: 174 -CIYVAIGQKRENLSRIYETLKEHDALKNTIIIDAPSTSPYE-QYLAPYVAMAHAENISY 231
Query: 257 FRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDAL 316
D LI +DDL KHA YR+++LL +P G+EA+PGD+F+ HS+LLERA K
Sbjct: 232 NDD----VLIVFDDLTKHANIYREIALLTNKPVGKEAFPGDMFFAHSKLLERAGKF---K 284
Query: 317 GAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGS 376
++TALP+++T ND+++ I +N+ISITDGQI ++LF G PAI+I LSVSR GS
Sbjct: 285 NRKTITALPILQTVDNDITSLISSNIISITDGQIVTSSDLFASGKLPAIDIDLSVSRTGS 344
Query: 377 AAQVKAMKQVSGAVKGELAQYREMSSFSKFSSDLDSSTQKFLSKGERLTELLKQPQFSP 435
+ Q K + +V+G + Y+ S DL+ T L KG+ + ++ Q FS
Sbjct: 345 SVQSKTITKVAGEISKIYRAYKRQLKLSMLDYDLNKETSDLLFKGKMIEKMFNQKGFSL 403
>gnl|CDD|162913 TIGR02546, III_secr_ATP, type III secretion apparatus
H+-transporting two-sector ATPase.
Length = 422
Score = 197 bits (503), Expect = 5e-51
Identities = 127/422 (30%), Positives = 192/422 (45%), Gaps = 26/422 (6%)
Query: 29 GRVLSIGDGIARVYGLNNIRAGEMVQFSHGVYGMALNLEV-----DNVGVVILGSYKEIS 83
GRV + + + R GE+ L EV D + LG IS
Sbjct: 7 GRVTEVSGTLLKAVLPG-ARVGELCLIRRRDPS-QLLAEVVGFTGDEALLSPLGELHGIS 64
Query: 84 EGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTE--ADAPGIIQRQS 141
G V TGR + + VG LLGRV+D G P+DGKG + + AD P + RQ
Sbjct: 65 PGSEVIPTGRPLSIRVGEALLGRVLDGFGRPLDGKGELPAGEIETRPLDADPPPPMSRQP 124
Query: 142 VCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYC 201
+ +PL TG++AID L+ G GQR I GK++++ +G+ D
Sbjct: 125 IDQPLPTGVRAIDGLLTCGEGQRIGIFAGAGVGKSTLL--------GMIARGASAD--VN 174
Query: 202 IYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNG 261
+ IG++ V F++ S++VV+++ P+ +L A + A+ EYFRD G
Sbjct: 175 VIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAAYTATAIAEYFRDQG 234
Query: 262 YHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSL 321
L+ D L + A A R++ L PP R YP VF RLLERA + GS+
Sbjct: 235 KRVLLMMDSLTRFARALREIGLAAGEPPARGGYPPSVFSSLPRLLERAG-NGE---KGSI 290
Query: 322 TALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVK 381
TAL + + +D++ I V SI DG I L L + PAI++ S+SRV S
Sbjct: 291 TALYTVLVEGDDMNDPIADEVRSILDGHIVLSRALAERNHYPAIDVLASLSRVMSQVVST 350
Query: 382 AMKQVSGAVKGELAQYREMSSFSK---FSSDLDSSTQKFLSKGERLTELLKQPQFSPLAM 438
++ +G ++ LA Y+E+ + + D T + K + + L+Q
Sbjct: 351 EHRRAAGKLRRLLATYKEVELLIRLGEYQPGSDPETDDAIDKIDAIRAFLRQSTDEYSPY 410
Query: 439 EE 440
EE
Sbjct: 411 EE 412
>gnl|CDD|163292 TIGR03496, FliI_clade1, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively.
Length = 411
Score = 181 bits (461), Expect = 5e-46
Identities = 129/421 (30%), Positives = 199/421 (47%), Gaps = 24/421 (5%)
Query: 29 GRVLSIGDGIARVYGLNNIRAGEM--VQFSHG--VYGMALNLEVDNVGVVILGSYKEISE 84
GRV + + GL G ++ S G + + D V ++ L + +
Sbjct: 1 GRVTRVVGLVLEAVGLR-APVGSRCEIESSDGDPIEAEVVGFRGDRVLLMPLEDVEGLRP 59
Query: 85 GDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVCE 144
G V + +PVG LLGRV+D LG P+DGKGP+ +R A ++R + E
Sbjct: 60 GARVFPLEGPLRLPVGDSLLGRVIDGLGRPLDGKGPLDAGERVPLYAPPINPLKRAPIDE 119
Query: 145 PLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYV 204
PL G++AI+ L+ +GRGQR I GK S +L + +E D + V
Sbjct: 120 PLDVGVRAINGLLTVGRGQRMGIFAGSGVGK-STLL-------GMMARYTEAD---VVVV 168
Query: 205 A-IGQKRSSVARFV-KALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGY 262
IG++ V F+ L + G L+ S+VV A+A + M+L A F A+ EYFRD G
Sbjct: 169 GLIGERGREVKEFIEDILGEEG-LARSVVVAATADESPLMRLRAAFYATAIAEYFRDQGK 227
Query: 263 HALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLT 322
L+ D L + A+A R+++L + PP + YP VF +L+ERA + G GS+T
Sbjct: 228 DVLLLMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAKLPQLVERAGNGEE--GKGSIT 285
Query: 323 ALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKA 382
A + + +D I +I DG I L EL QG PAI+I S+SRV
Sbjct: 286 AFYTVLVEGDDQQDPIADAARAILDGHIVLSRELAEQGHYPAIDILASISRVMPDVVSPE 345
Query: 383 MKQVSGAVKGELAQY---REMSSFSKFSSDLDSSTQKFLSKGERLTELLKQPQFSPLAME 439
+Q + K L++Y R++ S + + D + ++ R+ L+Q + E
Sbjct: 346 HRQAARRFKQLLSRYQENRDLISIGAYQAGSDPELDQAIALYPRIEAFLQQGMRERASFE 405
Query: 440 E 440
E
Sbjct: 406 E 406
>gnl|CDD|132536 TIGR03497, FliI_clade2, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively.
Length = 413
Score = 180 bits (458), Expect = 9e-46
Identities = 119/327 (36%), Positives = 173/327 (52%), Gaps = 20/327 (6%)
Query: 76 LGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPG 135
LG + I G +V TGR + + VG LLGRV+D LG P+DG+GPI E+ + P
Sbjct: 51 LGEVEGIGPGSLVIATGRPLAIKVGKGLLGRVLDGLGRPLDGEGPIIGEEPYPLDNPPPN 110
Query: 136 IIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSE 195
++R + +PL TGIKAID L+ IG+GQR I GK+ T L + + ++
Sbjct: 111 PLKRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKS-----TLLGMIA---RNAK 162
Query: 196 KDKVYCIYVA--IGQKRSSVARFV-KALEDRGALSYSIVVVASASDPAPMQLLAPFAGCA 252
D I V IG++ V F+ K L + G L S+VVVA++ PA M+L A F A
Sbjct: 163 AD----INVIALIGERGREVRDFIEKDLGEEG-LKRSVVVVATSDQPALMRLKAAFTATA 217
Query: 253 MGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKM 312
+ EYFRD G L+ D + + A+A R++ L + PP Y VF L +LLER+
Sbjct: 218 IAEYFRDQGKDVLLMMDSVTRFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGNS 277
Query: 313 SDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVS 372
GS+T + +D++ I V I DG I L EL + PAI++ SVS
Sbjct: 278 ----QKGSITGFYTVLVDGDDMNEPIADAVRGILDGHIVLSRELAAKNHYPAIDVLASVS 333
Query: 373 RVGSAAQVKAMKQVSGAVKGELAQYRE 399
RV + + K+++G ++ LA Y+E
Sbjct: 334 RVMNEIVSEEHKELAGKLRELLAVYKE 360
>gnl|CDD|180762 PRK06936, PRK06936, type III secretion system ATPase; Provisional.
Length = 439
Score = 173 bits (439), Expect = 1e-43
Identities = 131/448 (29%), Positives = 202/448 (45%), Gaps = 36/448 (8%)
Query: 8 ISDILRKRIKDFGNDSEFSEI-GRVLSIGDGIARVYGLNNIRAGEMVQFSHGVYGMALNL 66
I LR I S +I GRV + I + + +R GE+ + ++L
Sbjct: 7 IPHHLRHAI----VGSRLIQIRGRVTQVTGTILKAV-VPGVRIGELCYLRNPDNSLSLQA 61
Query: 67 EVDNVGVV-------ILGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKG 119
EV +G LG IS V TG + V VG LLGRV+D LG P DG
Sbjct: 62 EV--IGFAQHQALLTPLGEMYGISSNTEVSPTGTMHQVGVGEHLLGRVLDGLGQPFDGGH 119
Query: 120 PIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSII 179
P + ADAP + R+ + PLS G++ ID L+ G GQR I GK++++
Sbjct: 120 PPEPAAWYPVYADAPAPMSRRLIETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLL 179
Query: 180 LDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGA--LSYSIVVVASAS 237
+S + +E D + IG++ V F+++ D G L +++VVA++
Sbjct: 180 --------ASLIRSAEVD--VTVLALIGERGREVREFIES--DLGEEGLRKAVLVVATSD 227
Query: 238 DPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGD 297
P+ + A F ++ EYFRD G L+ D + + A A R++ L PP R YP
Sbjct: 228 RPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPS 287
Query: 298 VFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELF 357
VF RL+ERA SD GS+TAL + + +D++ + SI DG I L +L
Sbjct: 288 VFAALPRLMERAG-QSD---KGSITALYTVLVEGDDMTEPVADETRSILDGHIILSRKLA 343
Query: 358 YQGIRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYREMSSFSK---FSSDLDSST 414
PAI++ S SRV + K K +G ++ LA+Y E+ + + D
Sbjct: 344 AANHYPAIDVLRSASRVMNQIVSKEHKTWAGRLRELLAKYEEVELLLQIGEYQKGQDKEA 403
Query: 415 QKFLSKGERLTELLKQPQFSPLAMEEQV 442
+ + + + L+Q E +
Sbjct: 404 DQAIERIGAIRGFLRQGTHELSHFNETL 431
>gnl|CDD|162162 TIGR01026, fliI_yscN, ATPase FliI/YscN family. This family of
ATPases demonstrates extensive homology with ATP
synthase F1, beta subunit. It is a mixture of members
with two different protein functions. The first group is
exemplified by Salmonella typhimurium FliI protein. It
is needed for flagellar assembly, its ATPase activity is
required for flagellation, and it may be involved in a
specialized protein export pathway that proceeds without
signal peptide cleavage. The second group of proteins
function in the export of virulence proteins;
exemplified by Yersinia sp. YscN protein an ATPase
involved in the type III secretory pathway for the
antihost Yops proteins.
Length = 440
Score = 166 bits (421), Expect = 2e-41
Identities = 101/344 (29%), Positives = 169/344 (49%), Gaps = 19/344 (5%)
Query: 59 VYGMALNLEVDNVGVVILGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGK 118
+ + + V ++ + + G V TG + + VG LLGRV+D LG PIDGK
Sbjct: 59 LVAEVVGFNGEFVFLMPYEEVEGVRPGSKVLATGEGLSIKVGDGLLGRVLDGLGKPIDGK 118
Query: 119 G-PIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTS 177
G + + ++R + E LSTG+++ID L+ +G+GQR I GK++
Sbjct: 119 GKFLDNVETEGLITAPINPLKRAPIREILSTGVRSIDGLLTVGKGQRIGIFAGSGVGKST 178
Query: 178 IILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGA--LSYSIVVVAS 235
++ + +E D + IG++ V F++ D G L S+VVVA+
Sbjct: 179 LL--------GMIARNTEADVN--VIALIGERGREVREFIE--HDLGEEGLKRSVVVVAT 226
Query: 236 ASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYP 295
+ ++L + A+ EYFRD G L+ D + + A+A R++ L PP + Y
Sbjct: 227 SDQSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYT 286
Query: 296 GDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETE 355
VF RLLERA A G GS+TA + + +D++ I +V I DG I L
Sbjct: 287 PSVFSTLPRLLERAG----ASGKGSITAFYTVLVEGDDMNEPIADSVRGILDGHIVLSRA 342
Query: 356 LFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYRE 399
L +G PAI++ S+SR+ +A + ++ + + L++Y++
Sbjct: 343 LAQRGHYPAIDVLASISRLMTAIVSEEHRRAARKFRELLSKYKD 386
>gnl|CDD|163293 TIGR03498, FliI_clade3, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively.
Length = 418
Score = 165 bits (419), Expect = 3e-41
Identities = 113/380 (29%), Positives = 181/380 (47%), Gaps = 22/380 (5%)
Query: 29 GRVLSIGDGIARVYGLN-NIRAGEMVQFSHG----VYGMALNLEVDNVGVVILGSYKEIS 83
GRV ++ + V GL+ +R G+ V + D V ++ + +
Sbjct: 1 GRVTAVTGLLIEVRGLSRAVRLGDRCAIRARDGRPVLAEVVGFNGDRVLLMPFEPLEGVG 60
Query: 84 EGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGPIKC-EQRSCTEADAPGIIQRQSV 142
G V + V LGRV++ALG PIDGKGP+ E+R A P + R V
Sbjct: 61 LGCAVFAREGPLAVRPHPSWLGRVINALGEPIDGKGPLPQGERRYPLRASPPPAMSRARV 120
Query: 143 CEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCI 202
EPL TG++ ID+ +P+ RGQR I GK++++ S + ++ D V +
Sbjct: 121 GEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTLL--------SMLARNTDADVV--V 170
Query: 203 YVAIGQKRSSVARFVKALEDRGA--LSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDN 260
+G++ V F++ +D G L S+VVVA++ + M+ A + A+ EYFRD
Sbjct: 171 IALVGERGREVREFLE--DDLGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAEYFRDQ 228
Query: 261 GYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGS 320
G L+ D + + A+A R++ L PP Y VF RLLERA ++ G GS
Sbjct: 229 GKDVLLLMDSVTRFAMAQREIGLAAGEPPVARGYTPSVFSELPRLLERAGPGAE--GKGS 286
Query: 321 LTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQV 380
+T + + +D + + V I DG I L+ + +G PAIN+ SVSR+
Sbjct: 287 ITGIFTVLVDGDDHNEPVADAVRGILDGHIVLDRAIAERGRYPAINVLASVSRLAPRVWS 346
Query: 381 KAMKQVSGAVKGELAQYREM 400
+++ ++ LA+Y E
Sbjct: 347 PEERKLVRRLRALLARYEET 366
>gnl|CDD|181092 PRK07721, fliI, flagellum-specific ATP synthase; Validated.
Length = 438
Score = 161 bits (408), Expect = 5e-40
Identities = 112/374 (29%), Positives = 190/374 (50%), Gaps = 27/374 (7%)
Query: 81 EISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQ 140
EI+ G +V+ TG+ ++V VG L+G+V+DALG P+DG K T+ D P ++R
Sbjct: 77 EIAPGCLVEATGKPLEVKVGSGLIGQVLDALGEPLDGSALPKGLAPVSTDQDPPNPLKRP 136
Query: 141 SVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVY 200
+ EP+ G++AIDSL+ +G+GQR I GK++++ + + +S D
Sbjct: 137 PIREPMEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTLM--GMIARNTSADLN------- 187
Query: 201 CIYVAIGQKRSSVARFV-KALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRD 259
+ IG++ V F+ + L G L SIVVVA++ PA M++ + A+ EYFRD
Sbjct: 188 -VIALIGERGREVREFIERDLGPEG-LKRSIVVVATSDQPALMRIKGAYTATAIAEYFRD 245
Query: 260 NGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAG 319
G + ++ D + + A+A R++ L + PP + Y VF + +LLER +G
Sbjct: 246 QGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTG----TNASG 301
Query: 320 SLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQ 379
S+TA + +D++ I V I DG L+ +L +G PAIN+ SVSRV +
Sbjct: 302 SITAFYTVLVDGDDMNEPIADTVRGILDGHFVLDRQLANKGQYPAINVLKSVSRVMNHIV 361
Query: 380 VKAMKQVSGAVKGELAQYRE------MSSFSKFSS-DLDSSTQKFLSKGERLTELLKQPQ 432
K+ + + L+ Y+ + ++ + SS ++D + Q + ++ LKQ
Sbjct: 362 SPEHKEAANRFRELLSTYQNSEDLINIGAYKRGSSREIDEAIQFY----PQIISFLKQGT 417
Query: 433 FSPLAMEEQVVMIF 446
EE + +
Sbjct: 418 DEKATFEESIQALL 431
>gnl|CDD|169656 PRK09099, PRK09099, type III secretion system ATPase; Provisional.
Length = 441
Score = 160 bits (407), Expect = 7e-40
Identities = 124/408 (30%), Positives = 196/408 (48%), Gaps = 29/408 (7%)
Query: 47 IRAGEMVQFSHGVYGMALNLEVDNVGVVILGSYKEISEGDIVKRTGRIVDVPVGLELLGR 106
++ E+V FS V AL + G +S G V GR + VPVG LLGR
Sbjct: 59 LQRAEVVGFSRDV---AL--------LSPFGELGGLSRGTRVIGLGRPLSVPVGPALLGR 107
Query: 107 VVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQREL 166
V+D LG PIDG GP+ C++ A P + R+ V PL TG++ +D L+ +G GQR
Sbjct: 108 VIDGLGEPIDGGGPLDCDELVPVIAAPPDPMSRRMVEAPLPTGVRIVDGLMTLGEGQRMG 167
Query: 167 IIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGAL 226
I GK S ++ F +G++ D V I IG++ V F++ + +
Sbjct: 168 IFAPAGVGK-STLMGMFA-------RGTQCD-VNVI-ALIGERGREVREFIELILGEDGM 217
Query: 227 SYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLR 286
+ S+VV A++ + + A + A+ EYFRD G L+ D L + A A R++ L
Sbjct: 218 ARSVVVCATSDRSSIERAKAAYVATAIAEYFRDRGLRVLLMMDSLTRFARAQREIGLAAG 277
Query: 287 RPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISIT 346
PP R +P VF RLLERA M + GS+TAL + + S I V I
Sbjct: 278 EPPARRGFPPSVFAELPRLLERAG-MGE---TGSITALYTVLAEDESGSDPIAEEVRGIL 333
Query: 347 DGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYREMSSF--- 403
DG + L E+ + PAI++ S+SRV + Q +G ++ LA++RE+ +
Sbjct: 334 DGHMILSREIAARNQYPAIDVLGSLSRVMPQVVPREHVQAAGRLRQLLAKHREVETLLQV 393
Query: 404 SKFSSDLDSSTQKFLSKGERLTELLKQPQFSPLAMEEQVVMIFAGISG 451
++ + D + ++K + + + L Q + + + A +SG
Sbjct: 394 GEYRAGSDPVADEAIAKIDAIRDFLSQRT-DEYSDPDATLAALAELSG 440
>gnl|CDD|180712 PRK06820, PRK06820, type III secretion system ATPase; Validated.
Length = 440
Score = 160 bits (406), Expect = 9e-40
Identities = 109/373 (29%), Positives = 175/373 (46%), Gaps = 17/373 (4%)
Query: 29 GRVLSIGDGIARVYGLNNIRAGEMVQFSH-GVYGMALNLEVDNVGVVILGSYKEISEGDI 87
G ++ IG + R L + GE+ + G+ +++E + + S + G
Sbjct: 31 GPIVEIGPTLLRA-SLPGVAQGELCRIEPQGMLAEVVSIEQEMALLSPFASSDGLRCGQW 89
Query: 88 VKRTGRIVDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVCEPLS 147
V G + V VG +L GR++D LG PIDG P+ + R + P + RQ + + L+
Sbjct: 90 VTPLGHMHQVQVGADLAGRILDGLGAPIDGGPPLTGQWRE-LDCPPPSPLTRQPIEQMLT 148
Query: 148 TGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIG 207
TGI+AID ++ G GQR I GK+ T L + S D + + IG
Sbjct: 149 TGIRAIDGILSCGEGQRIGIFAAAGVGKS-----TLLGMLCAD---SAADVM--VLALIG 198
Query: 208 QKRSSVARFVKALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIA 267
++ V F++ + A + ++VVVA++ PA +L + EYFRD G L+
Sbjct: 199 ERGREVREFLEQVLTPEARARTVVVVATSDRPALERLKGLSTATTIAEYFRDRGKKVLLM 258
Query: 268 YDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALPVI 327
D L ++A A R++ L PP ++P VF RLLER GS+TA +
Sbjct: 259 ADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSD----RGSITAFYTV 314
Query: 328 ETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVS 387
+ +D++ + V S+ DG I L L G PAI+I SVSR+ ++
Sbjct: 315 LVEGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSAGQLAMA 374
Query: 388 GAVKGELAQYREM 400
++ LA Y+E+
Sbjct: 375 QKLRRMLACYQEI 387
>gnl|CDD|181599 PRK08972, fliI, flagellum-specific ATP synthase; Validated.
Length = 444
Score = 157 bits (399), Expect = 7e-39
Identities = 107/360 (29%), Positives = 175/360 (48%), Gaps = 17/360 (4%)
Query: 97 VPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSL 156
+PVG+ LLGRV+D +GNP+DG GPI +QR+ + + R+ + EPL G++AI+++
Sbjct: 97 LPVGMSLLGRVIDGVGNPLDGLGPIYTDQRASRHSPPINPLSRRPITEPLDVGVRAINAM 156
Query: 157 IPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARF 216
+ +G+GQR + GK S++L +G+ D + + +G++ V F
Sbjct: 157 LTVGKGQRMGLFAGSGVGK-SVLLGMM-------TRGTTADVI--VVGLVGERGREVKEF 206
Query: 217 VKALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAV 276
++ + + S+VV A A M+L + EYFRD G + L+ D L ++A
Sbjct: 207 IEEILGEEGRARSVVVAAPADTSPLMRLKGCETATTIAEYFRDQGLNVLLLMDSLTRYAQ 266
Query: 277 AYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSA 336
A R+++L + PP + YP VF L+ERA G GS+TA + T+ +D+
Sbjct: 267 AQREIALAVGEPPATKGYPPSVFAKLPALVERAGNGGP--GQGSITAFYTVLTEGDDLQD 324
Query: 337 YIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVG----SAAQVKAMKQVSGAVKG 392
I +I DG I L EL G PAI+I S+SRV S ++AM++V V
Sbjct: 325 PIADASRAILDGHIVLSRELADSGHYPAIDIEASISRVMPMVISEEHLEAMRRVK-QVYS 383
Query: 393 ELAQYREMSSFSKFSSDLDSSTQKFLSKGERLTELLKQPQFSPLAMEEQVVMIFAGISGC 452
Q R++ S + D + + L+Q + + V M+ + C
Sbjct: 384 LYQQNRDLISIGAYKQGSDPRIDNAIRLQPAMNAFLQQTMKEAVPYDMSVNMLKQLAAQC 443
>gnl|CDD|181439 PRK08472, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 149 bits (379), Expect = 1e-36
Identities = 119/371 (32%), Positives = 176/371 (47%), Gaps = 29/371 (7%)
Query: 12 LRKRIKDFGNDSEFSEIGRVLSIGDGIARVYGLNNIRAGEMV-----QFSHGVYGMALNL 66
L+ +++ F F G + I I GLN G++V GM + +
Sbjct: 6 LKNKLQKFNLSPRF---GSITKISPTIIEADGLN-PSVGDIVKIESSDNGKECLGMVVVI 61
Query: 67 EVDNVGVVILGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGPIKCEQR 126
E + G+ + GD V + +++PVG LLGRVVD LG PIDGKG I E+
Sbjct: 62 EKEQFGISPFSFIEGFKIGDKVFISKEGLNIPVGRNLLGRVVDPLGRPIDGKGAIDYERY 121
Query: 127 SCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQ 186
+ ++R + E S G+K+ID L+ G+GQ+ I GK++++
Sbjct: 122 APIMKAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLM------- 174
Query: 187 KSSHDKGSEKD-KVYCIYVA-IGQKRSSVARFV-KALEDRGALSYSIVVVASASDPAPMQ 243
KG KV VA IG++ + F+ K L G L +++VVA++ D M+
Sbjct: 175 -GMIVKGCLAPIKV----VALIGERGREIPEFIEKNLG--GDLENTVIVVATSDDSPLMR 227
Query: 244 LLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHS 303
F ++ EYF++ G L D + + A+A R++ L L PP + YP V L
Sbjct: 228 KYGAFCAMSVAEYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLP 287
Query: 304 RLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRP 363
+L+ERA K G GS+TA + + +D+S I SI DG I L EL GI P
Sbjct: 288 QLMERAGKEE---GKGSITAFFTVLVEGDDMSDPIADQSRSILDGHIVLSRELTDFGIYP 344
Query: 364 AINIGLSVSRV 374
INI S SRV
Sbjct: 345 PINILNSASRV 355
>gnl|CDD|168181 PRK05688, fliI, flagellum-specific ATP synthase; Validated.
Length = 451
Score = 146 bits (371), Expect = 1e-35
Identities = 98/285 (34%), Positives = 149/285 (52%), Gaps = 17/285 (5%)
Query: 91 TGRIVDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGI 150
TGR+ P+G+ +LGRV+D G +DGKGP+K E + + R + EPL GI
Sbjct: 100 TGRL---PMGMSMLGRVLDGAGRALDGKGPMKAEDWVPMDGPTINPLNRHPISEPLDVGI 156
Query: 151 KAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKR 210
++I+ L+ +GRGQR + GK S++L + +E D + + IG++
Sbjct: 157 RSINGLLTVGRGQRLGLFAGTGVGK-SVLLGMM-------TRFTEADII--VVGLIGERG 206
Query: 211 SSVARFVKALEDRGALSYSIVVVASASDPAP-MQLLAPFAGCAMGEYFRDNGYHALIAYD 269
V F++ + L S VVVAS +D AP M+L A + EYFRD G + L+ D
Sbjct: 207 REVKEFIEHILGEEGLKRS-VVVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMD 265
Query: 270 DLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALPVIET 329
L + A A R+++L + PP + YP VF +L+ERA + G GS+TA + +
Sbjct: 266 SLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAG--NAEPGGGSITAFYTVLS 323
Query: 330 QVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRV 374
+ +D I + + DG I L L +G PAI+I S+SRV
Sbjct: 324 EGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRV 368
>gnl|CDD|168339 PRK06002, fliI, flagellum-specific ATP synthase; Validated.
Length = 450
Score = 142 bits (361), Expect = 2e-34
Identities = 118/382 (30%), Positives = 179/382 (46%), Gaps = 31/382 (8%)
Query: 29 GRVLSIGDGIARVYGLNN-IRAGEMVQFSHG---VYGMALNLEVDNVGVVILGSYKEISE 84
G V + RV GL+ +R G+ V G + ++ D V V EI
Sbjct: 28 GTVSEVTASHYRVRGLSRFVRLGDFVAIRADGGTHLGEVVRVDPDGVTVKPFEPRIEIGL 87
Query: 85 GDIVKRTG--RIVDVPVGLELLGRVVDALGNPIDGKGPIKC-EQRSCTEADAPGIIQRQS 141
GD V R G RI P GRV++ALG PIDG GP+ + +A AP + R
Sbjct: 88 GDAVFRKGPLRIRPDP---SWKGRVINALGEPIDGLGPLAPGTRPMSIDATAPPAMTRAR 144
Query: 142 VCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYC 201
V L TG++ ID P+ GQR I GK++ L L + + D
Sbjct: 145 VETGLRTGVRVIDIFTPLCAGQRIGIFAGSGVGKST--LLAMLARADAFDT--------- 193
Query: 202 IYVA-IGQKRSSVARFVKALED--RGALSYSIVVVASASDPAPM-QLLAPFAGCAMGEYF 257
+ +A +G++ V F LED L ++ VVA+ SD +PM + LAP A+ EYF
Sbjct: 194 VVIALVGERGREVREF---LEDTLADNLKKAVAVVAT-SDESPMMRRLAPLTATAIAEYF 249
Query: 258 RDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALG 317
RD G + L+ D + + A A R+++L PP YP VF RLLERA ++ G
Sbjct: 250 RDRGENVLLIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELPRLLERAGPGAE--G 307
Query: 318 AGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSA 377
GS+T + + +D + + ++ DG I L+ + QG PA++ S+SR+
Sbjct: 308 GGSITGIFSVLVDGDDHNDPVADSIRGTLDGHIVLDRAIAEQGRYPAVDPLASISRLARH 367
Query: 378 AQVKAMKQVSGAVKGELAQYRE 399
A +++ +K +A++ E
Sbjct: 368 AWTPEQRKLVSRLKSMIARFEE 389
>gnl|CDD|180526 PRK06315, PRK06315, type III secretion system ATPase; Provisional.
Length = 442
Score = 139 bits (351), Expect = 2e-33
Identities = 96/326 (29%), Positives = 159/326 (48%), Gaps = 16/326 (4%)
Query: 76 LGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDG--KGP-IKCEQRSCTEAD 132
LG +S V TG + + G LLGRV++ LG PID KGP ++
Sbjct: 75 LGELTGVSPSSEVIPTGLPLHIRAGNGLLGRVLNGLGEPIDTETKGPLENVDETYPIFRA 134
Query: 133 APGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDK 192
P + R + LSTG++ ID ++ + RGQR I GK+S++ +
Sbjct: 135 PPDPLHRAKLRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLL--------GMIAR 186
Query: 193 GSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPAPMQLLAPFAGCA 252
+E+ V I + IG++ V F++ + S++VV+++ + ++L A + G A
Sbjct: 187 NAEEADVNVIAL-IGERGREVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTA 245
Query: 253 MGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKM 312
+ EYFRD G ++ D + + A A R++ L PP R Y VF +LLER+
Sbjct: 246 IAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERSGA- 304
Query: 313 SDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVS 372
SD G++TA + +D++ + V SI DG I L L PAI++ S+S
Sbjct: 305 SD---KGTITAFYTVLVAGDDMNEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASIS 361
Query: 373 RVGSAAQVKAMKQVSGAVKGELAQYR 398
R+ +A + +++ G + LA+Y+
Sbjct: 362 RLLTAIVPEEQRRIIGKAREVLAKYK 387
>gnl|CDD|162170 TIGR01041, ATP_syn_B_arch, ATP synthase archaeal, B subunit.
Archaeal ATP synthase shares extensive sequence
similarity with eukaryotic and prokaryotic V-type
(H+)-ATPases.
Length = 458
Score = 136 bits (345), Expect = 1e-32
Identities = 85/292 (29%), Positives = 138/292 (47%), Gaps = 7/292 (2%)
Query: 84 EGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVC 143
G V+ TG + +PV ++LGR+++ G PIDG I ++R R+
Sbjct: 63 TGTKVRFTGETLKLPVSEDMLGRILNGSGEPIDGGPEIVPDERRDINGAPINPYAREYPE 122
Query: 144 EPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIY 203
E + TGI AID + + RGQ+ I + Q + + SE ++
Sbjct: 123 EFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELAAQ-IARQATVRGEESE---FAVVF 178
Query: 204 VAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFR-DNGY 262
A+G F+K E+ GAL ++V + A DPA +++ P EY +
Sbjct: 179 AAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAFEKDM 238
Query: 263 HALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLT 322
H L+ D+ + A R++S PGR YPG ++ + + ERA ++ GS+T
Sbjct: 239 HVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVKGK--KGSIT 296
Query: 323 ALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRV 374
+P++ +D++ IP IT+GQI L EL +GI P IN+ S+SR+
Sbjct: 297 QMPILTMPGDDITHPIPDLTGYITEGQIVLSRELHRKGIYPPINVLPSLSRL 348
>gnl|CDD|180875 PRK07196, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 136 bits (345), Expect = 1e-32
Identities = 94/338 (27%), Positives = 163/338 (48%), Gaps = 22/338 (6%)
Query: 99 VGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGI--IQRQSVCEPLSTGIKAIDSL 156
+G LGRV++ LG P+DGKG + + + P I +QR++V PL G+ AI+ L
Sbjct: 92 IGDSWLGRVINGLGEPLDGKGQLGGS--TPLQQQLPQIHPLQRRAVDTPLDVGVNAINGL 149
Query: 157 IPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARF 216
+ IG+GQR ++ GK S++L + ++ D V + IG++ V F
Sbjct: 150 LTIGKGQRVGLMAGSGVGK-SVLLGMI-------TRYTQADVV--VVGLIGERGREVKEF 199
Query: 217 VKALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAV 276
++ ++ S+VV A A + M++ A A+ Y+RD G+ L+ D L ++A+
Sbjct: 200 IEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAM 259
Query: 277 AYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSA 336
A R+++L L PP + YP F + RL E A ++ G G++TA+ + + +D
Sbjct: 260 AQREIALSLGEPPATKGYPPSAFSIIPRLAESAG---NSSGNGTMTAIYTVLAEGDDQQD 316
Query: 337 YIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSR----VGSAAQVKAMKQVSGAVKG 392
I ++ DG I L +L G PAI+I S+SR V + Q KA +
Sbjct: 317 PIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIGSQQAKAASLLKQCY-A 375
Query: 393 ELAQYREMSSFSKFSSDLDSSTQKFLSKGERLTELLKQ 430
+ + + + + D + + +T+ L+Q
Sbjct: 376 DYMAIKPLIPLGGYVAGADPMADQAVHYYPAITQFLRQ 413
>gnl|CDD|181253 PRK08149, PRK08149, ATP synthase SpaL; Validated.
Length = 428
Score = 136 bits (345), Expect = 1e-32
Identities = 101/333 (30%), Positives = 157/333 (47%), Gaps = 18/333 (5%)
Query: 75 ILGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGN---PIDGKGPIKCEQRSC-TE 130
++G+ + +S ++K TG+ + V VG LLG V+D G D + +
Sbjct: 60 LIGNAQGLSRQVVLKPTGKPLSVWVGEALLGAVLDPTGKIVERFDAPPTVGPISEERVID 119
Query: 131 ADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSH 190
P +R+ + EPL TG++AID L+ G GQR I GKTS+ +N H
Sbjct: 120 VAPPSYAERRPIREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTSL-----MNMLIEH 174
Query: 191 DKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPAPMQLLAPFAG 250
SE D V+ I + IG++ V FV++L ++V A++ + + A
Sbjct: 175 ---SEAD-VFVIGL-IGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALVA 229
Query: 251 CAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAA 310
+ EYFRD G ++ D + ++A A R ++L P R YP VF RLLER
Sbjct: 230 TTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAAGELPARRGYPASVFDSLPRLLERPG 289
Query: 311 KMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLS 370
A AGS+TA + + + I + SI DG I+L +L +G PAI++ S
Sbjct: 290 ----ATLAGSITAFYTVLLESEEEPDPIGDEIRSILDGHIYLSRKLAAKGHYPAIDVLKS 345
Query: 371 VSRVGSAAQVKAMKQVSGAVKGELAQYREMSSF 403
VSRV +Q++ A + L + E+ F
Sbjct: 346 VSRVFGQVTDPKHRQLAAAFRKLLTRLEELQLF 378
>gnl|CDD|136438 PRK07594, PRK07594, type III secretion system ATPase SsaN;
Validated.
Length = 433
Score = 132 bits (334), Expect = 2e-31
Identities = 111/416 (26%), Positives = 183/416 (43%), Gaps = 22/416 (5%)
Query: 29 GRVLSIGDGIARVYGLNNIRAGEMVQF-SHGVYGMALNLEVDNVGVVILGSYKEISEGDI 87
GR+ + + + L + GE+ + + + S + G
Sbjct: 23 GRIQDVSATLLNAW-LPGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTIGLHCGQQ 81
Query: 88 VKRTGRIVDVPVGLELLGRVVDALGNPIDGKG-PIKCEQRSCTEADAPGIIQRQSVCEPL 146
V R VPVG LLGRV+D G P+DG+ P C + +A P + RQ + +PL
Sbjct: 82 VMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPDVCWKD--YDAMPPPAMVRQPITQPL 139
Query: 147 STGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAI 206
TGI+AIDS+ G GQR I GK++++ L D + V I
Sbjct: 140 MTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL--AMLCNAPDADSN--------VLVLI 189
Query: 207 GQKRSSVARFVKALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALI 266
G++ V F+ ++VVA++ PA ++ A F + E+FRDNG ++
Sbjct: 190 GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL 249
Query: 267 AYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALPV 326
D L ++A A R+++L YP VF RLLER M + GS+TA
Sbjct: 250 LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGE---KGSITAFYT 305
Query: 327 IETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQV 386
+ + +D++ + V S+ DG I L L +G PAI++ ++SRV +Q+
Sbjct: 306 VLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQL 365
Query: 387 SGAVKGELAQYREMS---SFSKFSSDLDSSTQKFLSKGERLTELLKQPQFSPLAME 439
+ ++ LA Y+E+ ++ +D+ T K + + L+Q + E
Sbjct: 366 AAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPE 421
>gnl|CDD|181583 PRK08927, fliI, flagellum-specific ATP synthase; Validated.
Length = 442
Score = 130 bits (330), Expect = 7e-31
Identities = 98/300 (32%), Positives = 148/300 (49%), Gaps = 17/300 (5%)
Query: 104 LGRVVDALGNPIDGKGPI-KCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRG 162
LGRVV+ALG PIDGKGP+ + A P R V EPL G++A+++ + RG
Sbjct: 99 LGRVVNALGEPIDGKGPLPQGPVPYPLRAPPPPAHSRARVGEPLDLGVRALNTFLTCCRG 158
Query: 163 QRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALED 222
QR I GK+ ++ S + ++ D V I + IG++ V F++ +D
Sbjct: 159 QRMGIFAGSGVGKSVLL--------SMLARNADAD-VSVIGL-IGERGREVQEFLQ--DD 206
Query: 223 RGA--LSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQ 280
G L+ S+VVVA++ +PA M+ A + A+ EYFRD G L D + + A+A R+
Sbjct: 207 LGPEGLARSVVVVATSDEPALMRRQAAYLTLAIAEYFRDQGKDVLCLMDSVTRFAMAQRE 266
Query: 281 LSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPT 340
+ L PP + Y VF RLLERA +G G++T L + +D + +
Sbjct: 267 IGLSAGEPPTTKGYTPTVFAELPRLLERAG--PGPIGEGTITGLFTVLVDGDDHNEPVAD 324
Query: 341 NVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYREM 400
V I DG I +E + +G PAIN+ SVSR + + +A Y +M
Sbjct: 325 AVRGILDGHIVMERAIAERGRYPAINVLKSVSRTMPGCNDPEENPLVRRARQLMATYADM 384
>gnl|CDD|179779 PRK04196, PRK04196, V-type ATP synthase subunit B; Provisional.
Length = 460
Score = 127 bits (321), Expect = 9e-30
Identities = 102/354 (28%), Positives = 156/354 (44%), Gaps = 42/354 (11%)
Query: 41 VYGLNNIRAGEMVQFSHG----VYGMALNLEVDNVGVVILGSYKEISEGDI-VKRTGRIV 95
V G+ + GE+V+ G L + D V + + D V+ TG +
Sbjct: 17 VEGVEGVAYGEIVEIELPNGEKRRGQVLEVSEDKAVVQVFEGTTGLDLKDTKVRFTGEPL 76
Query: 96 DVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDS 155
+PV ++LGR+ D LG PIDG I E+R + R+ E + TGI AID
Sbjct: 77 KLPVSEDMLGRIFDGLGRPIDGGPEIIPEKRLDINGAPINPVAREYPEEFIQTGISAIDG 136
Query: 156 LIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHD------------KGSEKDKVYCIY 203
L + RGQ+ L F H+ G E + ++
Sbjct: 137 LNTLVRGQK---------------LPIFSGSGLPHNELAAQIARQAKVLGEE-ENFAVVF 180
Query: 204 VAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFR-DNGY 262
A+G F++ E+ GAL S+V + A DPA ++L P EY + G
Sbjct: 181 AAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTPRMALTAAEYLAFEKGM 240
Query: 263 HALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRL---LERAAKMSDALGAG 319
H L+ D+ + A R++S PGR YPG Y+++ L ERA ++ G
Sbjct: 241 HVLVILTDMTNYCEALREISAAREEVPGRRGYPG---YMYTDLATIYERAGRIKGK--KG 295
Query: 320 SLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSR 373
S+T +P++ +D++ IP IT+GQI L EL +GI P I++ S+SR
Sbjct: 296 SITQIPILTMPDDDITHPIPDLTGYITEGQIVLSRELHRKGIYPPIDVLPSLSR 349
>gnl|CDD|181182 PRK07960, fliI, flagellum-specific ATP synthase; Validated.
Length = 455
Score = 118 bits (298), Expect = 3e-27
Identities = 93/299 (31%), Positives = 147/299 (49%), Gaps = 25/299 (8%)
Query: 97 VPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSL 156
+P+G LLGRV+D G P+DG + +QR + L TG++AI++L
Sbjct: 110 LPLGPALLGRVLDGSGKPLDGLPAPDTGETGALITPPFNPLQRTPIEHVLDTGVRAINAL 169
Query: 157 IPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVA-IGQKRSSVAR 215
+ +GRGQR + GK+ +L + + + D I V IG++ V
Sbjct: 170 LTVGRGQRMGLFAGSGVGKS--VLLGMMARYTQAD---------VIVVGLIGERGREVKD 218
Query: 216 FVKALEDRGALSYSIVVVASASDPAPMQLL--APFAGCAMGEYFRDNGYHALIAYDDLQK 273
F++ + + S VV+A+ +D +P+ + A +A + E FRD G H L+ D L +
Sbjct: 219 FIENILGAEGRARS-VVIAAPADVSPLLRMQGAAYA-TRIAEDFRDRGQHVLLIMDSLTR 276
Query: 274 HAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVND 333
+A+A R+++L + PP + YP VF L+ERA G GS+TA + T+ +D
Sbjct: 277 YAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIS--GGGSITAFYTVLTEGDD 334
Query: 334 VSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSA-------AQVKAMKQ 385
I + +I DG I L L G PAI+I S+SR +A A+V+ KQ
Sbjct: 335 QQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALIDEQHYARVRQFKQ 393
>gnl|CDD|132348 TIGR03305, alt_F1F0_F1_bet, alternate F1F0 ATPase, F1 subunit beta.
A small number of taxonomically diverse prokaryotic
species have what appears to be a second ATP synthase,
in addition to the normal F1F0 ATPase in bacteria and
A1A0 ATPase in archaea. These enzymes use ion gradients
to synthesize ATP, and in principle may run in either
direction. This model represents the F1 beta subunit of
this apparent second ATP synthase.
Length = 449
Score = 117 bits (295), Expect = 6e-27
Identities = 103/407 (25%), Positives = 179/407 (43%), Gaps = 24/407 (5%)
Query: 56 SHGVYGMALNLEVDNVGVVILGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPI 115
V + L+ +V + L + ++ G V+ +G + PVG L R+ D GN I
Sbjct: 32 GEVVVEVLSQLDAHHVRGIALTPTQGLARGMPVRDSGGPLKAPVGKPTLSRMFDVFGNTI 91
Query: 116 DGKGPIK-CEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTG 174
D + P K E RS +A P + +R S E TGIKAID L+P+ RG + + G G
Sbjct: 92 DRREPPKDVEWRSVHQA-PPTLTRRSSKSEVFETGIKAIDVLVPLERGGKAGLFGGAGVG 150
Query: 175 KTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVA 234
KT ++ + N H S I+ IG++ + +++ G L +++V
Sbjct: 151 KTVLLTEMIHNMVGQHQGVS-------IFCGIGERCREGEELYREMKEAGVLDNTVMVFG 203
Query: 235 SASDPAPMQLLAPFAGCAMGEYFRDN-GYHALIAYDDLQKHAVAYRQLSLLLRRPPGREA 293
++P + M EYFRD+ L+ D++ + A ++S LL + P R
Sbjct: 204 QMNEPPGARFRVGHTALTMAEYFRDDEKQDVLLLIDNIFRFIQAGSEVSGLLGQMPSRLG 263
Query: 294 YPGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLE 353
Y + + L ER A SD G++T++ + +D + + S + L
Sbjct: 264 YQPTLGTELAELEERIATTSD----GAITSIQAVYVPADDFTDPAAVHTFSHLSASLVLS 319
Query: 354 TELFYQGIRPAINIGLSVSRVGSAAQV-KAMKQVSGAVKGELAQYREMSSFSKF--SSDL 410
+ +G+ PAI+ S S++ + V + ++ V+ LAQY E+ L
Sbjct: 320 RKRASEGLYPAIDPLQSTSKMATPGIVGERHYDLAREVRQTLAQYEELKDIIAMLGLEQL 379
Query: 411 DSSTQKFLSKGERLTELLKQP-----QFSPLAMEEQVVMIFAGISGC 452
++ +++ RL L QP QF+ M+ + V + + GC
Sbjct: 380 SREDRRVVNRARRLERFLTQPFFTTEQFT--GMKGKTVSLEDALDGC 424
>gnl|CDD|130111 TIGR01039, atpD, ATP synthase, F1 beta subunit. The sequences of
ATP synthase F1 alpha and beta subunits are related and
both contain a nucleotide-binding site for ATP and ADP.
They have a common amino terminal domain but vary at the
C-terminus. The beta chain has catalytic activity, while
the alpha chain is a regulatory subunit. Proton
translocating ATP synthase, F1 beta subunit is
homologous to proton translocating ATP synthase
archaeal/vacuolar(V1), A subunit.
Length = 461
Score = 115 bits (289), Expect = 3e-26
Identities = 105/399 (26%), Positives = 169/399 (42%), Gaps = 29/399 (7%)
Query: 63 ALNLEV------DNVGVVILGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPID 116
L LEV D V + +GS + G V TG + VPVG E LGR+ + LG PID
Sbjct: 38 ELTLEVAQHLGDDTVRTIAMGSTDGLVRGLEVIDTGAPISVPVGKETLGRIFNVLGEPID 97
Query: 117 GKGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKT 176
KGPI ++R AP ++ + E L TGIK ID L P +G + + G GKT
Sbjct: 98 EKGPIPAKERWPIHRKAPSFEEQSTKVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKT 157
Query: 177 SIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASA 236
+I + N H Y ++ +G++ +++ G + + +V
Sbjct: 158 VLIQELINNIAKEHGG-------YSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQM 210
Query: 237 SDPAPMQLLAPFAGCAMGEYFRD-NGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYP 295
++P ++ G M EYFRD G L+ D++ + A ++S LL R P Y
Sbjct: 211 NEPPGARMRVALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQ 270
Query: 296 GDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETE 355
+ L ER GS+T++ + +D++ P + D L +
Sbjct: 271 PTLATEMGELQERITSTK----TGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRK 326
Query: 356 LFYQGIRPAINIGLSVSRVGSAAQV-KAMKQVSGAVKGELAQYREMSSFSKF--SSDLDS 412
+ GI PA++ S SR+ + V + V+ V+ L +Y+E+ +L
Sbjct: 327 IAELGIYPAVDPLDSTSRLLDPSVVGEEHYDVARGVQQILQRYKELQDIIAILGMDELSE 386
Query: 413 STQKFLSKGERLTELLKQPQFSPLAMEEQVVMIFAGISG 451
+ + + R+ L QP F V +F G G
Sbjct: 387 EDKLTVERARRIQRFLSQPFF--------VAEVFTGQPG 417
>gnl|CDD|102061 PRK05922, PRK05922, type III secretion system ATPase; Validated.
Length = 434
Score = 112 bits (281), Expect = 2e-25
Identities = 82/284 (28%), Positives = 132/284 (46%), Gaps = 22/284 (7%)
Query: 93 RIVDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKA 152
R + + LLGRV+D GNP+DGK + + P + RQ + E TGIKA
Sbjct: 88 RPPSLHLSDHLLGRVLDGFGNPLDGKEQLPKTHLKPLFSSPPSPMSRQPIQEIFPTGIKA 147
Query: 153 IDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSS 212
ID+ + +G+GQR + + +GK+S++ S+ KGS+ + IG++
Sbjct: 148 IDAFLTLGKGQRIGVFSEPGSGKSSLL--------STIAKGSK--STINVIALIGERGRE 197
Query: 213 VARFVKALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQ 272
V +++ ++ A +I++ + A + AP +++A A + EYFRD G+ L D L
Sbjct: 198 VREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAAMTIAEYFRDQGHRVLFIMDSLS 257
Query: 273 KHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVN 332
+ A ++++L Y VF+ S ERA GS+TAL I N
Sbjct: 258 RWIAALQEVALARGETLSAHHYAASVFHHVSEFTERAGNND----KGSITALYAILHYPN 313
Query: 333 DVSAYIPTNVISITDGQIFL---ETELFYQGIRPAINIGLSVSR 373
+ + S+ DG FL L P I+I S+SR
Sbjct: 314 HPDIFTDY-LKSLLDGHFFLTPQGKALA----SPPIDILTSLSR 352
>gnl|CDD|180696 PRK06793, fliI, flagellum-specific ATP synthase; Validated.
Length = 432
Score = 106 bits (267), Expect = 9e-24
Identities = 99/395 (25%), Positives = 182/395 (46%), Gaps = 29/395 (7%)
Query: 57 HGVYGMALNLEVDNVGVVILGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPID 116
H V + +E +N ++ +++ GD V V +P G LLG+V+ A G ++
Sbjct: 51 HNVLCEVIAIEKENNMLLPFEQTEKVCYGDSVTLIAEDVVIPRGNHLLGKVLSANGEVLN 110
Query: 117 GKGPIKCEQRSCTEADAPGI--IQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTG 174
+ Q+ + DAP I +R+ + + TGIK+IDS++ IG GQ+ I G
Sbjct: 111 EEAENIPLQK--IKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVG 168
Query: 175 KTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVA 234
K++++ N K+ + + +G++ V F++ + S+VVVA
Sbjct: 169 KSTLLGMIAKNAKADIN----------VISLVGERGREVKDFIRKELGEEGMRKSVVVVA 218
Query: 235 SASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAY 294
++ + MQL A ++ EYFRD G + L+ D + + A A R + + ++ P
Sbjct: 219 TSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELP----I 274
Query: 295 PGDVFYLHS---RLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIF 351
G + S +LLER+ K GS+T + + +D++ +P I DG I
Sbjct: 275 GGKTLLMESYMKKLLERSGKTQK----GSITGIYTVLVDGDDLNGPVPDLARGILDGHIV 330
Query: 352 LETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYREMSSFSKFSSDLD 411
L+ EL PAI++ SVSR+ Q++ ++ L+ Y+E + K + +
Sbjct: 331 LKRELATLSHYPAISVLDSVSRIMEEIVSPNHWQLANEMRKILSIYKENELYFKLGTIQE 390
Query: 412 SSTQKFL----SKGERLTELLKQPQFSPLAMEEQV 442
++ ++ +K E + LKQ + ++ V
Sbjct: 391 NAENAYIFECKNKVEGINTFLKQGRSDSFQFDDIV 425
>gnl|CDD|162169 TIGR01040, V-ATPase_V1_B, V-type (H+)-ATPase V1, B subunit. This
models eukaryotic vacuolar (H+)-ATPase that is
responsible for acidifying cellular compartments. This
enzyme shares extensive sequence similarity with
archaeal ATP synthase.
Length = 466
Score = 105 bits (263), Expect = 4e-23
Identities = 83/301 (27%), Positives = 134/301 (44%), Gaps = 12/301 (3%)
Query: 91 TGRIVDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGI 150
TG I+ PV ++LGRV + G PID P+ E R E + TGI
Sbjct: 70 TGDILRTPVSEDMLGRVFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGI 129
Query: 151 KAIDSLIPIGRGQRELIIGDRKTG------KTSIILDTFLNQKSSHDKGSEKDKVYCIYV 204
AID + I RGQ+ I G I L + + D + + I
Sbjct: 130 SAIDVMNSIARGQKIPIFS--AAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVF 187
Query: 205 AIGQKRSSVARFVKA-LEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFR-DNGY 262
A ARF K E+ G++ + + A+DP +++ P EY
Sbjct: 188 AAMGVNMETARFFKQDFEENGSMERVCLFLNLANDPTIERIITPRLALTTAEYLAYQCEK 247
Query: 263 HALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLT 322
H L+ D+ +A A R++S PGR +PG ++ + + ERA ++ GS+T
Sbjct: 248 HVLVILTDMSSYADALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGR--NGSIT 305
Query: 323 ALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKA 382
+P++ +D++ IP IT+GQI+++ +L + I P IN+ S+SR+ +A +
Sbjct: 306 QIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEG 365
Query: 383 M 383
M
Sbjct: 366 M 366
>gnl|CDD|183615 PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional.
Length = 461
Score = 100 bits (252), Expect = 7e-22
Identities = 89/337 (26%), Positives = 154/337 (45%), Gaps = 31/337 (9%)
Query: 74 VILGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADA 133
+ LGS ++ GD V+ TG ++VPVG +LGR++D LG P+DG P+ E+R +
Sbjct: 55 IALGSTSGLARGDEVRNTGGPIEVPVGEAVLGRLLDVLGEPLDGGPPLPAEERRPIHSTI 114
Query: 134 PGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKG 193
P + ++ + E L TGIK ID L PI +G + + G GKT ++++ + S G
Sbjct: 115 PPLAEQDTSTEILETGIKVIDLLCPIAKGGKTGLFGGAGVGKTVLMME-LIFNISKQHSG 173
Query: 194 SEKDKVYCIYVAIGQKRSSVA-RFVKALEDRGALSYSIVVVASASDPAPMQLLAPFAGCA 252
S ++ +G+ RS +++ G L +++V ++P ++ G
Sbjct: 174 SS------VFAGVGE-RSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLTGLT 226
Query: 253 MGEYFRD-NGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAK 311
+ EY RD L+ D++ + A ++S LL R P R Y L A+
Sbjct: 227 IAEYLRDEEKEDVLLFIDNIFRFVQAGSEVSGLLGRMPSRVGY-------QPTLASEVAE 279
Query: 312 MSDAL---GAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIG 368
+ + + GS+T++ + +D++ + S D + L +GI PAI+
Sbjct: 280 LQERIASTKNGSITSIQAVYVPADDLTDPAAVAIFSHLDSTVVLSRAQAAKGIYPAIDPL 339
Query: 369 LSVSR------VGSAAQVKAMKQVSGAVKGELAQYRE 399
S S VG + + VK L +Y+E
Sbjct: 340 ASSSNLLDPLVVG-----ERHYDAAIEVKRILQRYKE 371
>gnl|CDD|179373 PRK02118, PRK02118, V-type ATP synthase subunit B; Provisional.
Length = 436
Score = 97.0 bits (242), Expect = 9e-21
Identities = 87/314 (27%), Positives = 134/314 (42%), Gaps = 22/314 (7%)
Query: 45 NNIRAGEM--VQFSHG-VYGMALNLEVDNVGVVILGSYKEISEGDIVKRTGRIVDVPVGL 101
+ GE+ V+ G + L+ D V + + G + IS GD V GR + V
Sbjct: 21 EGVGYGELATVERKDGSSLAQVIRLDGDKVTLQVFGGTRGISTGDEVVFLGRPMQVTYSE 80
Query: 102 ELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGI--IQRQSVCEPLSTGIKAIDSLIPI 159
LLGR + G PIDG GP + E E P + ++R E + TGI ID +
Sbjct: 81 SLLGRRFNGSGKPIDG-GP-ELEGEP-IEIGGPSVNPVKRIVPREMIRTGIPMIDVFNTL 137
Query: 160 GRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKA 219
Q+ I +++ L +E D + I +G F
Sbjct: 138 VESQKIPIFSVSGEPYNALLARIALQ--------AEADII--ILGGMGLTFDDYLFFKDT 187
Query: 220 LEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFR-DNGYHALIAYDDLQKHAVAY 278
E+ GAL +++ + +ASDP LL P A+ E F + L+ D+ A A
Sbjct: 188 FENAGALDRTVMFIHTASDPPVECLLVPDMALAVAEKFALEGKKKVLVLLTDMTNFADAL 247
Query: 279 RQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYI 338
+++S+ + + P YPG L+S L R K D GS+T + V +DV+ +
Sbjct: 248 KEISITMDQIPSNRGYPGS---LYSDLASRYEKAVDFEDGGSITIIAVTTMPGDDVTHPV 304
Query: 339 PTNVISITDGQIFL 352
P N IT+GQ +L
Sbjct: 305 PDNTGYITEGQFYL 318
>gnl|CDD|181752 PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.
Length = 463
Score = 79.0 bits (196), Expect = 3e-15
Identities = 35/78 (44%), Positives = 42/78 (53%)
Query: 85 GDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVCE 144
G V TG + VPVG LGR+ + LG PID KGPI E+R AP + + E
Sbjct: 67 GMEVIDTGAPISVPVGKATLGRIFNVLGEPIDEKGPIGAEERWPIHRKAPSFEELSTKTE 126
Query: 145 PLSTGIKAIDSLIPIGRG 162
L TGIK ID L P +G
Sbjct: 127 ILETGIKVIDLLAPYAKG 144
>gnl|CDD|130115 TIGR01043, ATP_syn_A_arch, ATP synthase archaeal, A subunit.
Archaeal ATP synthase shares extensive sequence
similarity with eukaryotic and prokaryotic V-type
(H+)-ATPases.
Length = 578
Score = 65.5 bits (160), Expect = 3e-11
Identities = 66/239 (27%), Positives = 111/239 (46%), Gaps = 32/239 (13%)
Query: 144 EPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIY 203
PL TG + +D+ PI +G I G +GKT + Q K S+ D V +Y
Sbjct: 204 VPLITGQRILDTFFPIAKGGTAAIPGPFGSGKT-------VTQHQLA-KWSDADIV--VY 253
Query: 204 VAIGQKRSSVARFVK---ALED----RGALSYSIVVVASASDPAPMQLLAPFAGCAMGEY 256
+ G++ + + ++ L+D + + ++++ +++ P + + + G + EY
Sbjct: 254 IGCGERGNEMTDVLEEFPELKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEY 313
Query: 257 FRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRL---LERAAKMS 313
FRD GY + D + A A R++S L PG E YP YL SRL ERA ++
Sbjct: 314 FRDMGYDVALMADSTSRWAEAMREISGRLEEMPGEEGYPA---YLASRLAEFYERAGRVK 370
Query: 314 DALGA----GSLTALPVIETQVNDVSAYIPTNVISITDGQIF--LETELFYQGIRPAIN 366
LG GS+T + + D S + N + I ++F L+ +L + PAIN
Sbjct: 371 -TLGGEERVGSVTVIGAVSPPGGDFSEPVTQNTLRIV--KVFWALDADLAQRRHFPAIN 426
Score = 27.4 bits (61), Expect = 9.9
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 29 GRVLSIGDGIARVYGLNNIRAGEMVQFSH-GVYGMALNLEVDNVGVVILGSYKEISEGDI 87
GR++ + + G+ + E+V+ G+ G + +E D + + I G+
Sbjct: 2 GRIIRVSGPLVVADGMKGAQMYEVVKVGEEGLIGEIIRIEGDKAFIQVYEETSGIKPGEP 61
Query: 88 VKRTGRIVDVPVGLELLGRVVDALGNPID 116
V TG + V +G LLG + D + P+D
Sbjct: 62 VVGTGAPLSVELGPGLLGSIYDGVQRPLD 90
>gnl|CDD|162171 TIGR01042, V-ATPase_V1_A, V-type (H+)-ATPase V1, A subunit. This
models eukaryotic vacuolar (H+)-ATPase that is
responsible for acidifying cellular compartments. This
enzyme shares extensive sequence similarity with
archaeal ATP synthase.
Length = 591
Score = 55.5 bits (134), Expect = 3e-08
Identities = 68/250 (27%), Positives = 112/250 (44%), Gaps = 40/250 (16%)
Query: 145 PLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYV 204
PL TG + +D+L P +G I G GKT I S K S D + +YV
Sbjct: 209 PLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVI--------SQSLSKYSNSDAI--VYV 258
Query: 205 AIGQKRSSVARFVKALEDRGALSYSI-----------VVVASASD-PAPMQLLAPFAGCA 252
G++ + +A + L D L+ + +VA+ S+ P + + + G
Sbjct: 259 GCGERGNEMA---EVLMDFPELTMEVDGREESIMKRTTLVANTSNMPVAAREASIYTGIT 315
Query: 253 MGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRL---LERA 309
+ EYFRD GY+ + D + A A R++S L P YP YL +RL ERA
Sbjct: 316 LAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLASFYERA 372
Query: 310 AKMSDALGA----GSLTALPVIETQVNDVSAYIPTNVISITDGQIF--LETELFYQGIRP 363
++ LG+ GS++ + + D S + + + I Q+F L+ +L + P
Sbjct: 373 GRVK-CLGSPEREGSVSIVGAVSPPGGDFSDPVTSATLGIV--QVFWGLDKKLAQRKHFP 429
Query: 364 AINIGLSVSR 373
++N +S S+
Sbjct: 430 SVNWLISYSK 439
Score = 27.4 bits (61), Expect = 8.1
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 51 EMVQFSHG-VYGMALNLEVDNVGVVILGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVD 109
E+V+ H + G + LE D + + ++ GD V RTG+ + V +G +LG + D
Sbjct: 25 ELVRVGHDELVGEIIRLEGDKATIQVYEETSGLTVGDPVLRTGKPLSVELGPGILGNIFD 84
Query: 110 ALGNPI 115
+ P+
Sbjct: 85 GIQRPL 90
>gnl|CDD|184795 PRK14698, PRK14698, V-type ATP synthase subunit A; Provisional.
Length = 1017
Score = 55.0 bits (132), Expect = 4e-08
Identities = 48/208 (23%), Positives = 87/208 (41%), Gaps = 16/208 (7%)
Query: 185 NQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVK---ALED----RGALSYSIVVVASAS 237
N + H D IY+ G++ + + ++ L+D + + ++++ +++
Sbjct: 669 NTVTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSN 728
Query: 238 DPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGD 297
P + + + G + EYFRD GY + D + A A R++S L PG E YP
Sbjct: 729 MPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPA- 787
Query: 298 VFYLHSRLLE------RAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIF 351
YL S+L E R + GS++ + + D S + N + +
Sbjct: 788 --YLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWA 845
Query: 352 LETELFYQGIRPAINIGLSVSRVGSAAQ 379
L+ +L + PAIN S S A +
Sbjct: 846 LDADLARRRHFPAINWLTSYSLYVDAVK 873
>gnl|CDD|179776 PRK04192, PRK04192, V-type ATP synthase subunit A; Provisional.
Length = 586
Score = 54.8 bits (133), Expect = 5e-08
Identities = 63/206 (30%), Positives = 92/206 (44%), Gaps = 42/206 (20%)
Query: 138 QRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKD 197
++ EPL TG + ID+ P+ +G I G +GKT + + K ++ D
Sbjct: 203 EKLPPVEPLITGQRVIDTFFPVAKGGTAAIPGPFGSGKT------VTQHQLA--KWADAD 254
Query: 198 KVYCIYVAIGQKRSSVA----RFVKALEDR---GALSYSIVVVASASDPAPMQLLAPFA- 249
V IYV G++ + + F + L D L V++A+ S+ M P A
Sbjct: 255 IV--IYVGCGERGNEMTEVLEEFPE-LIDPKTGRPLMERTVLIANTSN---M----PVAA 304
Query: 250 -------GCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLH 302
G + EY+RD GY L+ D + A A R++S L PG E YP YL
Sbjct: 305 REASIYTGITIAEYYRDMGYDVLLMADSTSRWAEALREISGRLEEMPGEEGYPA---YLA 361
Query: 303 SRL---LERAAKMSDALGA--GSLTA 323
SRL ERA ++ LG GS+T
Sbjct: 362 SRLAEFYERAGRVK-TLGGEEGSVTI 386
>gnl|CDD|150147 pfam09378, HAS-barrel, HAS barrel domain. The HAS barrel is named
after HerA-ATP Synthase. In ATP synthases, this domain
is implicated in the assembly of the catalytic toroid
and docking of accessory subunits, such as the subunit
of the ATP synthase complex. Similar roles in docking of
the functional partner, the NurA nuclease, and assembly
of the HerA toroid complex appear likely for the
HAS-barrel of the HerA family.
Length = 88
Score = 44.9 bits (106), Expect = 5e-05
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 28 IGRVL---SIGDGIARVYGLNNIRAGEMVQFSHG---VYGMALNLEVDNVGVVILGSYKE 81
IG V+ S DGI RV GL ++R GE V+ V GM LN+E + L +
Sbjct: 1 IGIVIGTVSSNDGIFRVEGLKDVRVGEYVEIELDGSKVLGMVLNIERGLSNDLNLVLSLK 60
Query: 82 ISEGDIVKRTGRIVDVPVGLELLGRVVD 109
+ G + P G ++LG+V
Sbjct: 61 ELDESNGDIVGVVAFEPTGAKVLGKVKR 88
>gnl|CDD|181809 PRK09376, rho, transcription termination factor Rho; Provisional.
Length = 416
Score = 40.5 bits (96), Expect = 0.001
Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 144 EPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSII 179
E LST I ID + PIG+GQR LI+ K GKT ++
Sbjct: 153 EDLSTRI--IDLIAPIGKGQRGLIVAPPKAGKTVLL 186
>gnl|CDD|183675 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 38.0 bits (89), Expect = 0.006
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 153 IDSLIPIGRGQRELIIGDRKTGKTSI 178
ID ++PIG+GQR LI+ K GKT+I
Sbjct: 407 IDLIMPIGKGQRGLIVSPPKAGKTTI 432
>gnl|CDD|162030 TIGR00767, rho, transcription termination factor Rho. Members of
this family differ in the specificity of RNA binding.
Length = 415
Score = 35.8 bits (83), Expect = 0.028
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 144 EPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSII 179
E LST + +D PIG+GQR LI+ K GKT ++
Sbjct: 152 EDLSTRV--LDLFAPIGKGQRGLIVAPPKAGKTVLL 185
>gnl|CDD|183622 PRK12608, PRK12608, transcription termination factor Rho;
Provisional.
Length = 380
Score = 35.1 bits (81), Expect = 0.040
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
Query: 120 PIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSII 179
P+ +R E + + R +D + PIG+GQR LI+ + GKT ++
Sbjct: 103 PLHPRERLRLETGSDDLSMR------------VVDLVAPIGKGQRGLIVAPPRAGKTVLL 150
>gnl|CDD|150144 pfam09371, Tex_N, Tex-like protein N-terminal domain. This
presumed domain is found at the N-terminus of protein
tex from Bordetella pertussis. This protein defines a
novel family of prokaryotic transcriptional accessory
factors.
Length = 193
Score = 34.4 bits (80), Expect = 0.070
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 451 GCLDEVAVSQVRKFETNFLSHMRVSS--QDILEDIRKQKVLTDDIRSKLIN-EIKVFLED 507
G LDEV Q+R+ E + + IL+ I +Q LT +++ + E LED
Sbjct: 37 GGLDEV---QLREIEERLTYLRELEKRKETILKSIEEQGKLTPELKKAIEAAETLTELED 93
>gnl|CDD|180744 PRK06914, PRK06914, short chain dehydrogenase; Provisional.
Length = 280
Score = 31.1 bits (71), Expect = 0.62
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 451 GCLDEVAVSQVRK-FETNFLSHMRVSSQDILEDIRKQKVLTDDIRSKLIN 499
G ++E+ V + RK FETN + V +Q +L +RKQK K+IN
Sbjct: 95 GFVEEIPVEEYRKQFETNVFGAISV-TQAVLPYMRKQK------SGKIIN 137
>gnl|CDD|148846 pfam07471, Phage_Nu1, Phage DNA packaging protein Nu1. Terminase,
the DNA packaging enzyme of bacteriophage lambda, is a
heteromultimer composed of subunits Nu1 and A. The
smaller Nu1 terminase subunit has a low-affinity ATPase
stimulated by non-specific DNA.
Length = 164
Score = 30.6 bits (69), Expect = 0.89
Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 15/123 (12%)
Query: 374 VGSAAQVKAMKQVSGAVKGELAQYREMSSFSKFSSDLDSSTQKFLSKGERLTELLKQPQF 433
+ + A + + + E+ + S+ SDL T + + RLT Q
Sbjct: 43 TAAVIRWYAERDAEIENEKLRKEVEELRAASE--SDLQPGTIDY--ERHRLTRAQADAQE 98
Query: 434 SPLAMEEQVVM-----------IFAGISGCLDEVAVSQVRKFETNFLSHMRVSSQDILED 482
A + V+ + A I+ LD + +S R+F H+ V ++I++
Sbjct: 99 LKNARDSAEVVETEFCTFVLSRVAAEIASILDGIPLSVQRRFPELENRHIDVLKREIIKA 158
Query: 483 IRK 485
+ K
Sbjct: 159 MNK 161
>gnl|CDD|178220 PLN02610, PLN02610, probable methionyl-tRNA synthetase.
Length = 801
Score = 30.1 bits (68), Expect = 1.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 223 RGALSYSIVVVASASDPAPMQLLAPFAGCAMGE 255
RG S ++V+ AS SD ++L+ P A+GE
Sbjct: 707 RGIKSQAMVLAASNSDHTKVELVEPPESAAVGE 739
>gnl|CDD|182210 PRK10050, PRK10050, curli assembly protein CsgF; Provisional.
Length = 138
Score = 28.4 bits (63), Expect = 4.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 162 GQRELIIGDRKTGKTSIILDTFLNQKSS 189
GQ +L + DRKTG+TS I + L S+
Sbjct: 109 GQLQLNVTDRKTGQTSTIQVSGLQNNST 136
>gnl|CDD|162276 TIGR01266, fum_ac_acetase, fumarylacetoacetase. This enzyme
catalyzes the final step in the breakdown of tyrosine or
phenylalanine to fumarate and acetoacetate.
Length = 415
Score = 28.3 bits (63), Expect = 5.4
Identities = 33/133 (24%), Positives = 52/133 (39%), Gaps = 27/133 (20%)
Query: 244 LLAPFAGCAMGEYFRD-NGYHALIAYDDLQKHAVAYRQLSL----LLRRPPGREAYPGDV 298
+P G A+G+ D + L L KH + Q +L L RP +EA
Sbjct: 26 NSSPRIGVAIGDQILDLSVIAHLFTGPALSKHQHVFDQSTLNAFMALGRPAWKEARA--- 82
Query: 299 FYLHSRLLERAAKMSD--ALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETEL 356
L + L A++ D AL +LT + + ++P + TD
Sbjct: 83 -RLQNLLSASQARLRDNAALRQRALTPQ-------AEATMHLPAQIGDYTD--------- 125
Query: 357 FYQGIRPAINIGL 369
FY I+ A N+G+
Sbjct: 126 FYSSIQHATNVGI 138
>gnl|CDD|169981 PRK09577, PRK09577, multidrug efflux protein; Reviewed.
Length = 1032
Score = 27.9 bits (62), Expect = 5.9
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 378 AQVKAMKQVSGAVKG 392
A VKAMKQ+SGA+ G
Sbjct: 429 ATVKAMKQISGAIVG 443
>gnl|CDD|178765 PLN03226, PLN03226, serine hydroxymethyltransferase; Provisional.
Length = 475
Score = 27.6 bits (62), Expect = 6.9
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Query: 257 FRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDAL 316
+R + LI YD L+K A+ +R ++ G AYP D Y R K++D +
Sbjct: 161 YRLDESTGLIDYDKLEKKAMLFRPKLIIA----GASAYPRDWDY------ARMRKIADKV 210
Query: 317 GA 318
GA
Sbjct: 211 GA 212
>gnl|CDD|163593 TIGR03881, KaiC_arch_4, KaiC domain protein, PAE1156 family.
Members of this protein family are archaeal
single-domain KaiC_related proteins, homologous to the
Cyanobacterial circadian clock cycle protein KaiC, an
autokinase/autophosphorylase that has two copies of the
domain.
Length = 229
Score = 27.8 bits (62), Expect = 7.0
Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 19/112 (16%)
Query: 146 LSTGIKAIDSLIP--IGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIY 203
LSTG++ +D L+ I RG + G+ TGKT L D IY
Sbjct: 2 LSTGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDP--------VIY 53
Query: 204 VAIGQKRSSVAR--------FVKALEDRGALSYSIVVVASASDPAPMQLLAP 247
V + R S+ R F KA+E+ G L ++ D ++ L+
Sbjct: 54 VTTEESRESIIRQAAQFGMDFEKAIEE-GKLVIIDALMKEKEDEWSLRELSI 104
>gnl|CDD|183147 PRK11465, PRK11465, putative mechanosensitive channel protein;
Provisional.
Length = 741
Score = 27.4 bits (61), Expect = 8.2
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 300 YLHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVI 343
Y + RL + +S +G G + A+P+I QVN V NVI
Sbjct: 263 YWNRRL----SWLSSLIGYGLIVAVPIISNQVN-VQVGALANVI 301
>gnl|CDD|163043 TIGR02858, spore_III_AA, stage III sporulation protein AA. Members
of this protein are the stage III sporulation protein
AA, encoded by one of several genes in the spoIIIA
locus. It seems that this protein is found in a species
if and only if that species is capable of endospore
formation.
Length = 270
Score = 27.7 bits (62), Expect = 8.3
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 144 EPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIY 203
E L K + L+ R LII + GKT+++ D L + S G + +
Sbjct: 93 EKLGAADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRD--LARILS--TGISQLGLRGKK 148
Query: 204 VAIGQKRSSVA 214
V I +RS +A
Sbjct: 149 VGIVDERSEIA 159
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.137 0.380
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 8,267,069
Number of extensions: 554126
Number of successful extensions: 1297
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1214
Number of HSP's successfully gapped: 77
Length of query: 509
Length of database: 5,994,473
Length adjustment: 98
Effective length of query: 411
Effective length of database: 3,876,889
Effective search space: 1593401379
Effective search space used: 1593401379
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.6 bits)