BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780617|ref|YP_003065030.1| F0F1 ATP synthase subunit
alpha [Candidatus Liberibacter asiaticus str. psy62]
(509 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780617|ref|YP_003065030.1| F0F1 ATP synthase subunit alpha [Candidatus Liberibacter asiaticus
str. psy62]
Length = 509
Score = 1033 bits (2670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/509 (100%), Positives = 509/509 (100%)
Query: 1 MDIHAAEISDILRKRIKDFGNDSEFSEIGRVLSIGDGIARVYGLNNIRAGEMVQFSHGVY 60
MDIHAAEISDILRKRIKDFGNDSEFSEIGRVLSIGDGIARVYGLNNIRAGEMVQFSHGVY
Sbjct: 1 MDIHAAEISDILRKRIKDFGNDSEFSEIGRVLSIGDGIARVYGLNNIRAGEMVQFSHGVY 60
Query: 61 GMALNLEVDNVGVVILGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGP 120
GMALNLEVDNVGVVILGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGP
Sbjct: 61 GMALNLEVDNVGVVILGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGP 120
Query: 121 IKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIIL 180
IKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIIL
Sbjct: 121 IKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIIL 180
Query: 181 DTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPA 240
DTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPA
Sbjct: 181 DTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPA 240
Query: 241 PMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFY 300
PMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFY
Sbjct: 241 PMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFY 300
Query: 301 LHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQG 360
LHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQG
Sbjct: 301 LHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQG 360
Query: 361 IRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYREMSSFSKFSSDLDSSTQKFLSK 420
IRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYREMSSFSKFSSDLDSSTQKFLSK
Sbjct: 361 IRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYREMSSFSKFSSDLDSSTQKFLSK 420
Query: 421 GERLTELLKQPQFSPLAMEEQVVMIFAGISGCLDEVAVSQVRKFETNFLSHMRVSSQDIL 480
GERLTELLKQPQFSPLAMEEQVVMIFAGISGCLDEVAVSQVRKFETNFLSHMRVSSQDIL
Sbjct: 421 GERLTELLKQPQFSPLAMEEQVVMIFAGISGCLDEVAVSQVRKFETNFLSHMRVSSQDIL 480
Query: 481 EDIRKQKVLTDDIRSKLINEIKVFLEDFN 509
EDIRKQKVLTDDIRSKLINEIKVFLEDFN
Sbjct: 481 EDIRKQKVLTDDIRSKLINEIKVFLEDFN 509
>gi|254780684|ref|YP_003065097.1| flagellum-specific ATP synthase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 438
Score = 110 bits (275), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 97/345 (28%), Positives = 158/345 (45%), Gaps = 25/345 (7%)
Query: 61 GMALNLEVDNVGVVILGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDG--- 117
G + + +D V + +G +EIS GD+V GR P GRV++ALG PIDG
Sbjct: 60 GQVIRINLDIVYICPVGIGEEISLGDLVFHWGRFRISPSAC-WCGRVINALGKPIDGDDS 118
Query: 118 --KGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGK 175
KG + E S P + RQ V + TGI+ ID P+ GQR + GK
Sbjct: 119 LGKGDLSMEIMS----KVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGK 174
Query: 176 TSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVK-ALEDRGALSYSIVVVA 234
++++ + + DK I +G++ V F++ L D L S+VVVA
Sbjct: 175 STLL--SMFARSDCFDK--------VIISLVGERGREVREFIEDYLGDN--LKKSVVVVA 222
Query: 235 SASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAY 294
++ + ++ +AP + EYF G + L+ D + + A + R+++ P Y
Sbjct: 223 TSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGY 282
Query: 295 PGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLET 354
P VF RLLER G++TA+ + ++ + I +V SI DG I L
Sbjct: 283 PTSVFSELPRLLERIGPSEKE--KGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNR 340
Query: 355 ELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYRE 399
L +G P ++ SVSR+ A K++ ++ + ++ E
Sbjct: 341 SLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEE 385
>gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta [Candidatus Liberibacter asiaticus
str. psy62]
Length = 478
Score = 94.4 bits (233), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 132/297 (44%), Gaps = 23/297 (7%)
Query: 82 ISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQS 141
+S GD V TG + VPVG LGR+++ +G P+D +G I ++ +P ++ +
Sbjct: 69 LSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQST 128
Query: 142 VCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYC 201
L+TGIK ID + P +G + + G GKT +I++ N +H Y
Sbjct: 129 DASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-------YS 181
Query: 202 IYVAIGQK-RSSVARFVKALEDRGAL-----------SYSIVVVASASDPAPMQLLAPFA 249
++ +G++ R + + ++ + + S ++ ++P +
Sbjct: 182 VFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALT 241
Query: 250 GCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERA 309
G + E+FRD G L D++ + A ++S LL R P Y + L ER
Sbjct: 242 GLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQER- 300
Query: 310 AKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAIN 366
++ L GS+T++ I +D++ P + D L ++ +GI PAI+
Sbjct: 301 --ITTTL-KGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAID 354
>gi|254780810|ref|YP_003065223.1| transcription termination factor Rho [Candidatus Liberibacter
asiaticus str. psy62]
Length = 423
Score = 38.5 bits (88), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 13/131 (9%)
Query: 151 KAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKR 210
+ ID + PIG+GQR LI+ +TGKT ++ Q +H + Y I + I ++
Sbjct: 163 RVIDLIAPIGKGQRSLIVAPPRTGKTILL------QNIAHSIKKNHPECYLIVLLIDERP 216
Query: 211 SSVARFVKALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDD 270
V ++++ G + S ++A +++ A C + EY G +I D
Sbjct: 217 EEVTDMQRSVQ--GEVISSTFDESAARHVQVAEMVIAKAKCLV-EY----GLDVVILLDS 269
Query: 271 LQKHAVAYRQL 281
+ + AY L
Sbjct: 270 ITRLCRAYNVL 280
>gi|254780879|ref|YP_003065292.1| hypothetical protein CLIBASIA_03880 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 652
Score = 32.0 bits (71), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 175 KTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVA 234
K + L+TF + ++++ S+ ++ I+ G+ R+ RF+ ++ G++ Y
Sbjct: 422 KPTDFLETFFSVNHANNQASDDSELLYIHARFGETRTRFYRFLNPVD--GSVEY-FNENG 478
Query: 235 SASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQ 272
+S P ++ PF G R YH ++ Y +
Sbjct: 479 KSSRPFLLRTPVPFGRMTSGFGMR---YHPILGYSRMH 513
>gi|254780445|ref|YP_003064858.1| isoleucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 963
Score = 25.8 bits (55), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 8 ISDILRKRIKDFGNDSEFSEIGRVLSIGD 36
I+D + K KD G+D+ FSE R +GD
Sbjct: 522 INDRIIKTFKDQGSDAWFSEGSRDFFLGD 550
>gi|254780773|ref|YP_003065186.1| zinc metallopeptidase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 349
Score = 25.8 bits (55), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 208 QKRSSVARFVKALEDRGALSYSIVVVASAS---DPAPMQLLAPFAGCAMGEYFRDNGYHA 264
R+ + F + L++ +++ + V S++ D Q+ P + + F D+G++A
Sbjct: 216 HSRTVLQSFSRGLDEISSITRGFLGVLSSAFGKDTRLNQISGPVGIARIAKNFFDHGFNA 275
Query: 265 LIAYDDLQKHAVAYRQL 281
IA+ + A+ + L
Sbjct: 276 YIAFLAMFSWAIGFMNL 292
>gi|254780502|ref|YP_003064915.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
Liberibacter asiaticus str. psy62]
Length = 954
Score = 25.4 bits (54), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 272 QKHAVAYRQLSLLLRRPPG-------REAYP---GDVFYLHSRLLERAAKMSDALGAGSL 321
QK + L+L L P G R+A+ +YL SR K + G L
Sbjct: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
Query: 322 TALPVIETQVNDVSAYIPTNVISITDGQI 350
A+PV + + S IP++ S T+ ++
Sbjct: 924 NAVPVTDPNSSTHSLGIPSSCTSDTECEV 952
>gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62]
Length = 910
Score = 25.4 bits (54), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 61 GMALNLEVDNVGVVILGSYKEISEGDI----VKRTGRIVDVPVGLELLGR 106
GMA N+ N+G V+ G I DI + R D P G +LGR
Sbjct: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
>gi|254780765|ref|YP_003065178.1| 3-deoxy-manno-octulosonate cytidylyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 268
Score = 25.0 bits (53), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 96 DVP-VGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQ 138
D+P + E+L V+ L NPI G + T+ D P I++
Sbjct: 108 DIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVK 151
>gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 371
Score = 23.5 bits (49), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 21/116 (18%)
Query: 145 PLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLN------QKSSH-DKGSEKD 197
PL+ G++ I I LI G T K++ L+ N +K H KG +
Sbjct: 232 PLAWGVQHIQEKI------NRLIFGS--TTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDY 283
Query: 198 KVYCIYVAIGQKRS------SVARFVKALEDRGALSYSIVVVASASDPAPMQLLAP 247
K Y I++ G+ S + + RGA+ Y+I V A A+D +P
Sbjct: 284 KKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQAEAADQFLKNCASP 339
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.137 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 303,750
Number of Sequences: 1233
Number of extensions: 12539
Number of successful extensions: 56
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 18
length of query: 509
length of database: 328,796
effective HSP length: 78
effective length of query: 431
effective length of database: 232,622
effective search space: 100260082
effective search space used: 100260082
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 40 (20.0 bits)