HHsearch alignment for GI: 254780618 and conserved domain: CHL00119
>CHL00119 atpD ATP synthase CF1 delta subunit; Validated.
Probab=100.00 E-value=4.2e-42 Score=298.48 Aligned_cols=179 Identities=30% Similarity=0.480 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 44445557999999999986399899999999999995069989998518452204565788998620466434689999
Q gi|254780618|r 6 ALFSDVPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFCAITANFLR 85 (186)
Q Consensus 6 ~~~~~ia~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~sp~i~~~~K~~ii~~i~~~~~~~~~~~~fl~ 85 (186)
T Consensus 3 ~~~s~iAkrYA~ALf~~A~e~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~p~i~~~~K~~il~~~~~~-~~~~~~~nfl~ 81 (184)
T CHL00119 3 PLVSKIAQPYAEALLEFAVAKNILEQITNDLQLILTILANSPDLKKFLANPLITKEAKKEVLKKTFSK-QINENTLKFLM 81 (184)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_conf 17578899999999999987498999999999999999568999999858677989999999998653-04899999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHC-CEEEEEEEECCCHHCEEEEEECC
Q ss_conf 98533201101424999999988876555331010568998999999999999748-95899999974140238999799
Q gi|254780618|r 86 ILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIVG-KTVILDVMEDSALMGGFIVEIGA 164 (186)
Q Consensus 86 ~L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~~~-~~i~l~~~vD~slIGG~~i~vg~ 164 (186)
T Consensus 82 ll~~~~R~~~l~~I~~~f~~l~~~~~~~~~v~V~sA~~Ls~~q~~~i~~~l~~~~~~k~v~l~~~VDpsLIGGi~i~vgd 161 (184)
T CHL00119 82 VLVDRGRISLLDAIIEKYLELVYKLASIKIAEVTTAVPLSSEQKEALIEKLKEMTNAKEVKLVITVDPSLIGGFIIKIGS 161 (184)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEEECHHHHCCEEEEECC
T ss_conf 99878984358999999999999848969999998208999999999999999858982568877770340816999999
Q ss_pred EEEEHHHHHHHHHHHHHHHHC
Q ss_conf 785027999999999985224
Q gi|254780618|r 165 HQIDASLRTQLLKLGCILKEV 185 (186)
Q Consensus 165 ~~iD~Si~~kL~~l~~~l~~v 185 (186)
T Consensus 162 ~viD~Si~~kL~~l~~~L~~~ 182 (184)
T CHL00119 162 KVIDTSIQGQLKQLASHLDAV 182 (184)
T ss_pred EEEEHHHHHHHHHHHHHHHHH
T ss_conf 987587999999999999987