Query gi|254780618|ref|YP_003065031.1| F0F1 ATP synthase subunit delta [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 186
No_of_seqs 108 out of 2240
Neff 7.7
Searched_HMMs 39220
Date Sun May 29 23:15:54 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780618.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13432 consensus 100.0 2.4E-42 0 300.1 20.3 179 1-184 1-179 (180)
2 CHL00119 atpD ATP synthase CF1 100.0 4.2E-42 0 298.5 20.4 179 6-185 3-182 (184)
3 PRK13429 F0F1 ATP synthase sub 100.0 1.1E-41 0 295.8 20.2 177 8-184 3-179 (181)
4 PRK13439 consensus 100.0 1.2E-41 0 295.5 19.7 179 5-184 1-180 (180)
5 PRK13440 consensus 100.0 1.7E-41 0 294.5 20.2 179 8-186 3-181 (185)
6 PRK13437 consensus 100.0 5.1E-41 1.4E-45 291.3 21.2 176 8-184 3-178 (180)
7 PRK13436 F0F1 ATP synthase sub 100.0 6.5E-41 1.4E-45 290.6 20.4 175 9-184 5-179 (179)
8 PRK13434 F0F1 ATP synthase sub 100.0 1.9E-40 4.2E-45 287.6 20.0 175 1-184 1-175 (184)
9 PRK13433 consensus 100.0 2.4E-40 5.6E-45 286.9 20.5 175 9-183 5-180 (181)
10 PRK13438 consensus 100.0 3.2E-40 8.4E-45 286.1 20.3 173 9-185 6-178 (180)
11 pfam00213 OSCP ATP synthase de 100.0 2E-40 5.6E-45 287.5 18.5 171 11-182 1-171 (171)
12 PRK05758 F0F1 ATP synthase sub 100.0 8.8E-40 2.2E-44 283.2 19.0 173 7-184 3-175 (175)
13 COG0712 AtpH F0F1-type ATP syn 100.0 8.6E-39 2.2E-43 276.6 19.3 176 7-183 3-178 (178)
14 PRK13441 F0F1 ATP synthase sub 100.0 2E-38 5.1E-43 274.2 19.9 174 8-184 3-178 (180)
15 PRK08474 F0F1 ATP synthase sub 100.0 3.1E-36 8E-41 259.7 18.8 169 9-185 3-171 (176)
16 KOG1662 consensus 100.0 7.4E-34 1.9E-38 244.0 17.7 175 10-184 32-208 (210)
17 PRK13430 F0F1 ATP synthase sub 100.0 1.3E-29 3.2E-34 216.1 20.6 168 16-184 104-271 (271)
18 PRK13428 F0F1 ATP synthase sub 99.9 1.1E-25 2.7E-30 190.2 20.1 170 14-183 274-444 (445)
19 TIGR01145 ATP_synt_delta ATP s 99.9 2.9E-21 7.5E-26 160.9 10.5 171 11-182 1-172 (172)
20 PRK13431 F0F1 ATP synthase sub 99.4 2.3E-12 6E-17 102.1 11.2 169 8-182 4-176 (180)
21 TIGR03321 alt_F1F0_F0_B altern 98.9 3.1E-08 7.9E-13 74.9 11.0 71 112-182 175-245 (246)
22 PRK13430 F0F1 ATP synthase sub 96.6 0.055 1.4E-06 33.7 10.8 78 28-107 26-103 (271)
23 pfam01991 vATP-synt_E ATP synt 96.3 0.039 1E-06 34.6 8.6 114 61-182 68-186 (195)
24 PRK09098 type III secretion sy 95.0 0.12 3.1E-06 31.4 6.9 94 88-185 128-222 (229)
25 PRK06669 fliH flagellar assemb 95.0 0.35 9E-06 28.4 12.7 78 106-184 190-268 (268)
26 PRK13428 F0F1 ATP synthase sub 93.8 0.47 1.2E-05 27.5 7.7 80 25-106 195-274 (445)
27 PRK03963 V-type ATP synthase s 93.5 0.7 1.8E-05 26.4 8.9 52 130-183 135-189 (198)
28 PRK06328 type III secretion sy 93.4 0.74 1.9E-05 26.2 12.9 76 108-184 126-202 (223)
29 PRK02292 V-type ATP synthase s 90.7 1.5 3.9E-05 24.2 10.7 104 60-185 75-181 (187)
30 pfam02108 FliH Flagellar assem 90.2 0.7 1.8E-05 26.4 5.0 55 123-178 73-128 (128)
31 PRK13386 fliH flagellar assemb 84.1 3.7 9.4E-05 21.6 6.4 59 123-184 168-227 (236)
32 PRK06937 type III secretion sy 81.6 4.6 0.00012 21.0 13.7 80 104-184 121-201 (204)
33 COG1317 FliH Flagellar biosynt 78.0 6 0.00015 20.2 13.2 59 125-185 165-227 (234)
34 PRK05687 fliH flagellar assemb 76.5 6.5 0.00017 20.0 10.3 62 123-185 183-245 (252)
35 COG1390 NtpE Archaeal/vacuolar 75.4 7 0.00018 19.8 10.7 106 61-183 77-184 (194)
36 TIGR00538 hemN oxygen-independ 74.6 5 0.00013 20.7 4.0 91 88-178 77-186 (462)
37 TIGR02698 CopY_TcrY copper tra 74.4 3.9 9.9E-05 21.5 3.4 80 65-144 41-122 (130)
38 PRK01558 V-type ATP synthase s 67.4 10 0.00027 18.6 5.1 47 125-173 126-178 (198)
39 PRK05660 coproporphyrinogen II 51.4 20 0.0005 16.8 5.3 84 54-140 100-184 (378)
40 PRK05904 coproporphyrinogen II 51.0 20 0.00051 16.8 3.4 81 54-140 96-180 (353)
41 pfam07560 DUF1539 Domain of Un 47.4 20 0.0005 16.8 2.9 32 47-78 70-101 (126)
42 PRK08446 coproporphyrinogen II 40.1 29 0.00074 15.7 4.4 84 54-140 92-176 (351)
43 TIGR02349 DnaJ_bact chaperone 33.0 27 0.00068 15.9 1.7 25 113-137 360-384 (386)
44 smart00538 POP4 A domain found 31.3 40 0.001 14.8 3.1 27 135-161 6-35 (92)
45 TIGR02010 IscR iron-sulfur clu 31.3 35 0.00089 15.2 2.1 17 12-28 6-23 (140)
46 PRK07738 flagellar protein Fla 30.2 41 0.0011 14.7 6.3 73 91-164 4-79 (113)
47 LOAD_p29_RnaseP consensus 29.7 42 0.0011 14.6 2.9 27 135-161 6-35 (92)
48 PHA01351 putative minor struct 29.3 43 0.0011 14.6 6.8 28 66-93 988-1015(1070)
49 pfam06819 Arc_PepC Archaeal Pe 28.8 44 0.0011 14.5 2.5 24 114-137 78-101 (111)
50 TIGR01363 strep_his_triad stre 28.0 38 0.00096 15.0 1.8 18 153-170 124-145 (376)
51 PRK08949 consensus 26.8 47 0.0012 14.3 5.4 83 55-140 101-184 (378)
52 PRK11593 folB bifunctional dih 26.8 48 0.0012 14.3 3.3 48 78-125 54-101 (119)
53 PRK08208 coproporphyrinogen II 26.6 48 0.0012 14.3 6.1 84 95-178 78-179 (436)
54 TIGR02871 spore_ylbJ sporulati 26.1 34 0.00086 15.3 1.3 120 13-160 94-221 (384)
55 COG4086 Predicted secreted pro 25.8 26 0.00067 16.0 0.7 61 122-185 208-269 (299)
56 PRK08599 coproporphyrinogen II 25.5 50 0.0013 14.1 4.8 83 55-140 94-177 (377)
57 PRK03879 ribonuclease P protei 23.9 54 0.0014 13.9 3.1 23 139-161 12-36 (96)
58 PRK08898 coproporphyrinogen II 23.8 54 0.0014 13.9 5.5 80 54-140 114-197 (393)
59 pfam01868 UPF0086 Domain of un 22.9 56 0.0014 13.8 3.2 23 139-161 12-36 (89)
60 PRK12292 hisZ ATP phosphoribos 22.6 57 0.0014 13.8 5.9 35 125-159 233-267 (388)
61 pfam06635 NolV Nodulation prot 22.2 58 0.0015 13.7 13.3 101 76-182 95-198 (207)
62 PTZ00298 mevalonate kinase; Pr 22.0 58 0.0015 13.7 1.9 35 119-153 289-324 (328)
63 KOG3035 consensus 21.8 59 0.0015 13.7 2.6 20 8-27 146-165 (245)
64 PRK11245 folX D-erythro-7,8-di 21.2 61 0.0015 13.6 2.8 45 79-123 59-103 (120)
65 KOG4437 consensus 20.2 63 0.0016 13.5 5.4 44 59-102 172-226 (482)
66 PRK09058 coproporphyrinogen II 20.1 64 0.0016 13.4 3.8 59 120-178 119-190 (447)
No 1
>PRK13432 consensus
Probab=100.00 E-value=2.4e-42 Score=300.13 Aligned_cols=179 Identities=30% Similarity=0.530 Sum_probs=175.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 98632444455579999999999863998999999999999950699899985184522045657889986204664346
Q gi|254780618|r 1 MSHSFALFSDVPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFCAIT 80 (186)
Q Consensus 1 m~~~~~~~~~ia~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~sp~i~~~~K~~ii~~i~~~~~~~~~~ 80 (186)
|++++ +|+|||+|||++|.+.+.++.|.+++..+.+++.++|+|+.+|.||.++.++|..++.+++++.++++.+
T Consensus 1 M~~~~-----iA~~YA~ALf~~A~e~~~l~~v~~~l~~~~~~~~~~~~l~~~l~~p~i~~~~K~~ii~~l~~~~~~~~~~ 75 (180)
T PRK13432 1 MKNNI-----IARRYAKALFQLGAEDGQVERFGEELAQFADLLETNPELTDVLANPAYSIEAKRAVLEKLLEKLALSPTV 75 (180)
T ss_pred CCCCC-----CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHH
T ss_conf 99872-----1999999999999873999999999999999996799899998687899999999999871546767999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCHHCEEEE
Q ss_conf 89999985332011014249999999888765553310105689989999999999997489589999997414023899
Q gi|254780618|r 81 ANFLRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIVGKTVILDVMEDSALMGGFIV 160 (186)
Q Consensus 81 ~~fl~~L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~~~~~i~l~~~vD~slIGG~~i 160 (186)
.||+.+|++++|+.++++|++.|.+++++++|+..++|+||.|||++|+++|++.+++++|+++++.++|||+||||++|
T Consensus 76 ~nfl~~L~~~~r~~~l~~I~~~f~~l~~~~~~~~~v~V~sA~~Ls~~q~~~i~~~l~k~~~k~v~l~~~vD~slIGG~~i 155 (180)
T PRK13432 76 RNFLLLLVDRNRLAFLPQIVASYRALADELKGIVRAVVTSAIPLDAAVQQAIKAQLEKQTGKKVELEFQVDPSLLGGVVA 155 (180)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCHHHCCEEE
T ss_conf 99999999778565689999999999998659379999981799999999999999987414757898787124081699
Q ss_pred EECCEEEEHHHHHHHHHHHHHHHH
Q ss_conf 979978502799999999998522
Q gi|254780618|r 161 EIGAHQIDASLRTQLLKLGCILKE 184 (186)
Q Consensus 161 ~vg~~~iD~Si~~kL~~l~~~l~~ 184 (186)
++||++||+||+++|++|+++|++
T Consensus 156 ~vg~~viD~Svk~kL~~l~~~L~k 179 (180)
T PRK13432 156 KVGDKVLDGSIRTQLERIKDTLKK 179 (180)
T ss_pred EECCEEEEHHHHHHHHHHHHHHHC
T ss_conf 999998767699999999998737
No 2
>CHL00119 atpD ATP synthase CF1 delta subunit; Validated
Probab=100.00 E-value=4.2e-42 Score=298.48 Aligned_cols=179 Identities=30% Similarity=0.480 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 44445557999999999986399899999999999995069989998518452204565788998620466434689999
Q gi|254780618|r 6 ALFSDVPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFCAITANFLR 85 (186)
Q Consensus 6 ~~~~~ia~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~sp~i~~~~K~~ii~~i~~~~~~~~~~~~fl~ 85 (186)
.|.|+||+|||+|||++|.+.+.++.|.+++..+.+++.++|+|+.+|.||.++.++|..+++++|++ ++++.+.||+.
T Consensus 3 ~~~s~iAkrYA~ALf~~A~e~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~p~i~~~~K~~il~~~~~~-~~~~~~~nfl~ 81 (184)
T CHL00119 3 PLVSKIAQPYAEALLEFAVAKNILEQITNDLQLILTILANSPDLKKFLANPLITKEAKKEVLKKTFSK-QINENTLKFLM 81 (184)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_conf 17578899999999999987498999999999999999568999999858677989999999998653-04899999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHC-CEEEEEEEECCCHHCEEEEEECC
Q ss_conf 98533201101424999999988876555331010568998999999999999748-95899999974140238999799
Q gi|254780618|r 86 ILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIVG-KTVILDVMEDSALMGGFIVEIGA 164 (186)
Q Consensus 86 ~L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~~~-~~i~l~~~vD~slIGG~~i~vg~ 164 (186)
+|++++|+.++++|++.|..++.+++|+..++|+||.||+++|+++|++.+++++| +++++.++|||+||||++|++||
T Consensus 82 ll~~~~R~~~l~~I~~~f~~l~~~~~~~~~v~V~sA~~Ls~~q~~~i~~~l~~~~~~k~v~l~~~VDpsLIGGi~i~vgd 161 (184)
T CHL00119 82 VLVDRGRISLLDAIIEKYLELVYKLASIKIAEVTTAVPLSSEQKEALIEKLKEMTNAKEVKLVITVDPSLIGGFIIKIGS 161 (184)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEEECHHHHCCEEEEECC
T ss_conf 99878984358999999999999848969999998208999999999999999858982568877770340816999999
Q ss_pred EEEEHHHHHHHHHHHHHHHHC
Q ss_conf 785027999999999985224
Q gi|254780618|r 165 HQIDASLRTQLLKLGCILKEV 185 (186)
Q Consensus 165 ~~iD~Si~~kL~~l~~~l~~v 185 (186)
++||+||++||++|+++|++|
T Consensus 162 ~viD~Si~~kL~~l~~~L~~~ 182 (184)
T CHL00119 162 KVIDTSIQGQLKQLASHLDAV 182 (184)
T ss_pred EEEEHHHHHHHHHHHHHHHHH
T ss_conf 987587999999999999987
No 3
>PRK13429 F0F1 ATP synthase subunit delta; Provisional
Probab=100.00 E-value=1.1e-41 Score=295.78 Aligned_cols=177 Identities=33% Similarity=0.514 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 44555799999999998639989999999999999506998999851845220456578899862046643468999998
Q gi|254780618|r 8 FSDVPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFCAITANFLRIL 87 (186)
Q Consensus 8 ~~~ia~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~sp~i~~~~K~~ii~~i~~~~~~~~~~~~fl~~L 87 (186)
+++||+|||+|||++|.+++.++.|.+++..+.+++.++|+|+.|+.||.++.++|..++.++|++.++++.+.||+.+|
T Consensus 3 ~~~ia~rYA~ALf~~a~e~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~p~i~~~~K~~~i~~i~~~~~~~~~~~nfl~~L 82 (181)
T PRK13429 3 LNAIARRYAKALFQLAKEKGQVERVYEELKQLAALFETSPELRDALSNPVLSVEEKKAILEKLFGKLAVSPTLLNFLKLL 82 (181)
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 63116999999999998759999999999999999967999999983889999999999999855688889999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCHHCEEEEEECCEEE
Q ss_conf 53320110142499999998887655533101056899899999999999974895899999974140238999799785
Q gi|254780618|r 88 VANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIVGKTVILDVMEDSALMGGFIVEIGAHQI 167 (186)
Q Consensus 88 ~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~~~~~i~l~~~vD~slIGG~~i~vg~~~i 167 (186)
++++|++++++|++.|..++.+++|+..++|+||.|||++|+++|++.+++++|+++++.++|||+||||++|++||++|
T Consensus 83 ~~~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~tA~~Ls~~q~~~i~~~l~~~~~k~v~l~~~vD~sliGG~~i~vg~~vi 162 (181)
T PRK13429 83 ADRRRLGYLPAIAARYLELADEQRGIVRATVTSAVPLDEAQQEAIRQKLQKITGKKVELDTAVDPSLIGGVVVKIGDKVI 162 (181)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHCCEEEEEECCEEE
T ss_conf 87797346999999999999986795999999806899999999999999873557205888880140727999999988
Q ss_pred EHHHHHHHHHHHHHHHH
Q ss_conf 02799999999998522
Q gi|254780618|r 168 DASLRTQLLKLGCILKE 184 (186)
Q Consensus 168 D~Si~~kL~~l~~~l~~ 184 (186)
|+|++++|++|+++|++
T Consensus 163 D~Si~~kL~~lk~~Lkk 179 (181)
T PRK13429 163 DGSVATQLRRLKDSLKK 179 (181)
T ss_pred EHHHHHHHHHHHHHHHC
T ss_conf 66499999999999756
No 4
>PRK13439 consensus
Probab=100.00 E-value=1.2e-41 Score=295.50 Aligned_cols=179 Identities=26% Similarity=0.421 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 24444555799999999998639989999999999999506998999851845220456578899862046643468999
Q gi|254780618|r 5 FALFSDVPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFCAITANFL 84 (186)
Q Consensus 5 ~~~~~~ia~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~sp~i~~~~K~~ii~~i~~~~~~~~~~~~fl 84 (186)
++.+++||+|||+|||++|.+++.++.|.+++..+.+++.++|+|+.+|.||.++.++|..++.++|++ .+++.+.||+
T Consensus 1 m~~~~~ia~rYA~ALf~~A~e~~~l~~v~~el~~~~~~~~~~~el~~~l~sp~i~~~~K~~il~~i~~~-~~~~~~~nfl 79 (180)
T PRK13439 1 MPLLNSLTTPYAEALLQVAESRKESEEVVDQAKQLLELWNSSPELRDAMSSPVLEVEAKKKALIKLFSE-QVTPSLLNLL 79 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHC-CCCHHHHHHH
T ss_conf 941566289999999999987499999999999999999568999999858798999999999999844-1689999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCC-EEEEEEEECCCHHCEEEEEEC
Q ss_conf 9985332011014249999999888765553310105689989999999999997489-589999997414023899979
Q gi|254780618|r 85 RILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIVGK-TVILDVMEDSALMGGFIVEIG 163 (186)
Q Consensus 85 ~~L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~~~~-~i~l~~~vD~slIGG~~i~vg 163 (186)
.+|++++|+.++++|++.|..++.+++|+..++|+||.||+++|+++|.+.+++++|+ ++++.++|||+|||||+|++|
T Consensus 80 ~lL~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~sA~~Ls~~q~~~l~~~l~~~~g~~~v~l~~~vDpsLIGG~~i~ig 159 (180)
T PRK13439 80 KLLADRQRIGALDAVLERFLELYREQRNIALATVTSAVELTEDQQAALTKKVQSIAGTDKLEIDLKVDPSLIGGFVVSVG 159 (180)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHCEEEEEEC
T ss_conf 99987885637999999999999841797999999757999999999999999985898600355577122070799999
Q ss_pred CEEEEHHHHHHHHHHHHHHHH
Q ss_conf 978502799999999998522
Q gi|254780618|r 164 AHQIDASLRTQLLKLGCILKE 184 (186)
Q Consensus 164 ~~~iD~Si~~kL~~l~~~l~~ 184 (186)
|++||+|+++||++|++.|++
T Consensus 160 ~~viD~Si~~kL~~l~~~L~k 180 (180)
T PRK13439 160 SKVIDASLAGQVRRLGLALAK 180 (180)
T ss_pred CEEEEHHHHHHHHHHHHHHCC
T ss_conf 998757299999999998559
No 5
>PRK13440 consensus
Probab=100.00 E-value=1.7e-41 Score=294.54 Aligned_cols=179 Identities=20% Similarity=0.306 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 44555799999999998639989999999999999506998999851845220456578899862046643468999998
Q gi|254780618|r 8 FSDVPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFCAITANFLRIL 87 (186)
Q Consensus 8 ~~~ia~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~sp~i~~~~K~~ii~~i~~~~~~~~~~~~fl~~L 87 (186)
++.||+|||+|||++|.+.|.++.|.+++..+.+++.++|+|+.+|.||.++.++|.+++.++++++++++.+.||+.+|
T Consensus 3 ~~~ia~rYA~ALf~~A~e~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~ll 82 (185)
T PRK13440 3 IGVISMRYAKALMAYAEEKGAEDRVYHELVTLADSFSTVPELRAALDNPIVSVNEKLKLICTAAGGGKVSEEFIRFIRLV 82 (185)
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 74228999999999998759899999999999999975988999871968799999999999975798879999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCHHCEEEEEECCEEE
Q ss_conf 53320110142499999998887655533101056899899999999999974895899999974140238999799785
Q gi|254780618|r 88 VANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIVGKTVILDVMEDSALMGGFIVEIGAHQI 167 (186)
Q Consensus 88 ~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~~~~~i~l~~~vD~slIGG~~i~vg~~~i 167 (186)
++++|+.++++|+..|..++.+++|+..++|+||.||+++|+++|++.+++++|+++++.++|||+|||||+|++||++|
T Consensus 83 ~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~sA~~Ls~~~~~~i~~~l~k~~gk~v~l~~~vDpsLIGG~~i~vgd~vi 162 (185)
T PRK13440 83 LKERRETYLQFMSLMYIDLYRKKKHIGVGKLITAVPVDKAVENRIRQTAAHITHATMEFETVVDPSLEGGFIFDIGDYRL 162 (185)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHCCEEEEECCEEE
T ss_conf 97883869999999999999997797699998617999999999999998662877048876680350816999999987
Q ss_pred EHHHHHHHHHHHHHHHHCC
Q ss_conf 0279999999999852249
Q gi|254780618|r 168 DASLRTQLLKLGCILKEVD 186 (186)
Q Consensus 168 D~Si~~kL~~l~~~l~~v~ 186 (186)
|+|+++||++|+++|.+-|
T Consensus 163 D~Sik~kL~~lk~~ll~~n 181 (185)
T PRK13440 163 DASIATQLKRVKQQFIDKN 181 (185)
T ss_pred EHHHHHHHHHHHHHHHHHC
T ss_conf 4869999999999999855
No 6
>PRK13437 consensus
Probab=100.00 E-value=5.1e-41 Score=291.33 Aligned_cols=176 Identities=26% Similarity=0.426 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 44555799999999998639989999999999999506998999851845220456578899862046643468999998
Q gi|254780618|r 8 FSDVPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFCAITANFLRIL 87 (186)
Q Consensus 8 ~~~ia~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~sp~i~~~~K~~ii~~i~~~~~~~~~~~~fl~~L 87 (186)
.+.||+|||+|||++|.+.+.++.|.+++..+.+++.++|+|+.++.||.++.++|.+++.++|++ ++++.+.|||.+|
T Consensus 3 ~~~iA~rYA~ALf~~A~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~ii~~~~~~-~~~~~~~nfl~lL 81 (180)
T PRK13437 3 RGAVARRYAQALYEIAVQENLLDAIEAELKEVVECIEGNAELQKVLYHPHISLSEKKDLLNKLFTG-KLSDTTRNFLNLL 81 (180)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_conf 654289999999999987498999999999999999679999999868999999999999999823-4789999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCHHCEEEEEECCEEE
Q ss_conf 53320110142499999998887655533101056899899999999999974895899999974140238999799785
Q gi|254780618|r 88 VANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIVGKTVILDVMEDSALMGGFIVEIGAHQI 167 (186)
Q Consensus 88 ~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~~~~~i~l~~~vD~slIGG~~i~vg~~~i 167 (186)
++++|+.++++|++.|.+++.+++|+..++|+||.|||++|+++|++.+++++|+++++.++|||+||||++|++||++|
T Consensus 82 ~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~sA~~Ls~~q~~~i~~~l~k~~~k~v~l~~~VD~slIGG~~i~vg~~vi 161 (180)
T PRK13437 82 IDRRRENYFAEIAREFVHLANEARNIVEAKVTSAIELSETQKQRLHQELARMTGKNVRMVKAVDPSLIGGVVVRIGDRVI 161 (180)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCHHHCEEEEEECCEEE
T ss_conf 98787036999999999999997096024567537899999999999999997897389985271341717999999987
Q ss_pred EHHHHHHHHHHHHHHHH
Q ss_conf 02799999999998522
Q gi|254780618|r 168 DASLRTQLLKLGCILKE 184 (186)
Q Consensus 168 D~Si~~kL~~l~~~l~~ 184 (186)
|+||+++|++|+++|.+
T Consensus 162 D~Sik~kL~~lk~~Ll~ 178 (180)
T PRK13437 162 DGSVATKLARIRESLLH 178 (180)
T ss_pred EHHHHHHHHHHHHHHHH
T ss_conf 47399999999999860
No 7
>PRK13436 F0F1 ATP synthase subunit delta; Provisional
Probab=100.00 E-value=6.5e-41 Score=290.65 Aligned_cols=175 Identities=19% Similarity=0.256 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 45557999999999986399899999999999995069989998518452204565788998620466434689999985
Q gi|254780618|r 9 SDVPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFCAITANFLRILV 88 (186)
Q Consensus 9 ~~ia~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~sp~i~~~~K~~ii~~i~~~~~~~~~~~~fl~~L~ 88 (186)
.+++.|||+|||++|.++|.++.|.+++..+.+++.++|+|+.++.+|.++.++|..++..+|+ +++++.+.||+.+|+
T Consensus 5 ~~~~~~YA~ALf~~A~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~il~~~~~-~~~~~~~~nfl~lL~ 83 (179)
T PRK13436 5 DKNIYNYAEALFDIAVKENKVEKYINDVFKLIEILKNNQDLVKLLSSHFIDKQKKFKIIDKIFS-ANIDIILINFLKIIA 83 (179)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
T ss_conf 3407699999999998739999999999999999947999999870999999999999999984-248899999999998
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCHHCEEEEEECCEEEE
Q ss_conf 33201101424999999988876555331010568998999999999999748958999999741402389997997850
Q gi|254780618|r 89 ANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIVGKTVILDVMEDSALMGGFIVEIGAHQID 168 (186)
Q Consensus 89 ~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~~~~~i~l~~~vD~slIGG~~i~vg~~~iD 168 (186)
+++|+.++++|+..|.+++++++|+..|+|+||.|||++|+++|++.+++++|+++++.++|||+||||++|++||++||
T Consensus 84 ~~~R~~~l~~I~~~f~~l~~~~~~~~~a~V~sA~~Ls~~q~~~i~~~l~k~~~k~v~l~~~vDpslIGG~ii~vgd~viD 163 (179)
T PRK13436 84 KNNLFINYKQILKKLIKKANSKLNITYGEIYSTEKLSEVQISEFESKISKKLNKKVELVNKIDPKLIAGIRIIVDNKVFE 163 (179)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCHHCCCEEEEECCEEEE
T ss_conf 77737579999999999999978947999988899999999999999999979965999766711308369999999875
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 2799999999998522
Q gi|254780618|r 169 ASLRTQLLKLGCILKE 184 (186)
Q Consensus 169 ~Si~~kL~~l~~~l~~ 184 (186)
+||+++|++|+++|.+
T Consensus 164 ~Sik~kL~~lk~~L~~ 179 (179)
T PRK13436 164 NSIKSKLKELKKQVLK 179 (179)
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 8799999999998619
No 8
>PRK13434 F0F1 ATP synthase subunit delta; Provisional
Probab=100.00 E-value=1.9e-40 Score=287.55 Aligned_cols=175 Identities=29% Similarity=0.456 Sum_probs=167.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 98632444455579999999999863998999999999999950699899985184522045657889986204664346
Q gi|254780618|r 1 MSHSFALFSDVPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFCAIT 80 (186)
Q Consensus 1 m~~~~~~~~~ia~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~sp~i~~~~K~~ii~~i~~~~~~~~~~ 80 (186)
|+++. ||+|||+|||+.| +.++.|.+++..+.+++.++++|+.||.||.+++++|.+++.++|+ +++++.+
T Consensus 1 M~~~~-----iA~rYA~ALf~~a---~~~~~v~~~l~~l~~~~~~~~~l~~~l~sP~i~~~~K~~~l~~~~~-~~~s~~~ 71 (184)
T PRK13434 1 MNDSG-----VSKVYASALLGAA---NSPEEVEQELGDLVQLLFKDEKIRNFFLSPTVSPEEKEQTLAKNLR-GKISDIT 71 (184)
T ss_pred CCCCC-----CHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHH-CCCCHHH
T ss_conf 98750-----2589999999984---7576999999999999972999999986899999999999999982-3578999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCHHCEEEE
Q ss_conf 89999985332011014249999999888765553310105689989999999999997489589999997414023899
Q gi|254780618|r 81 ANFLRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIVGKTVILDVMEDSALMGGFIV 160 (186)
Q Consensus 81 ~~fl~~L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~~~~~i~l~~~vD~slIGG~~i 160 (186)
.||+.+|++++|+.++++|+..|..++.+++|+..|+|+||.|||++|+++|++.+++++|+++.++++|||+||||++|
T Consensus 72 ~nfl~ll~~~~R~~~L~~I~~~f~~l~~~~~g~~~a~V~sA~~Ls~~q~~~l~~~L~~~~gk~v~l~~~VDpsLIGG~vi 151 (184)
T PRK13434 72 LNFLGVLLNKGRFIYLPEIQKDFTVELDKKKGRVRAQIVSYPSLEPAQVDKLGSILSEKFKSEFILEVSEDKNLLGGFVV 151 (184)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCHHCCCEEE
T ss_conf 99999999788588899999999999984459899999976889999999999999999799579998778303081799
Q ss_pred EECCEEEEHHHHHHHHHHHHHHHH
Q ss_conf 979978502799999999998522
Q gi|254780618|r 161 EIGAHQIDASLRTQLLKLGCILKE 184 (186)
Q Consensus 161 ~vg~~~iD~Si~~kL~~l~~~l~~ 184 (186)
++||++||+||++||++|+++|.|
T Consensus 152 ~igd~viD~Sik~qL~~lk~~L~e 175 (184)
T PRK13434 152 QFNDLKIEKSIASQLGEIKKAMLE 175 (184)
T ss_pred EECCEEEEHHHHHHHHHHHHHHHH
T ss_conf 999998767799999999999987
No 9
>PRK13433 consensus
Probab=100.00 E-value=2.4e-40 Score=286.86 Aligned_cols=175 Identities=21% Similarity=0.263 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 455579999999999863998999999999999950699899985184-5220456578899862046643468999998
Q gi|254780618|r 9 SDVPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNP-LFSMKDRRSVIDDLVKDAHFCAITANFLRIL 87 (186)
Q Consensus 9 ~~ia~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~sp-~i~~~~K~~ii~~i~~~~~~~~~~~~fl~~L 87 (186)
.++|+|||+|||++|.|.+.++.|.+++..+.+++.++++|..++.+| ..+.+++..++..++.+.++++.+.|||.+|
T Consensus 5 ~~va~rYA~ALf~lA~e~~~ld~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~k~~~il~~~~~~~~~~~~~~Nfl~lL 84 (181)
T PRK13433 5 DNTINNYATALFNIAVKEKLVDDYIIQVDALIESLKDKDEFNKLVTFSNKHDKEKAILIIEDTFSQFNFDIYLINALKIL 84 (181)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 56488999999999987499999999999999999579999998748984669999999999985147889999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCHHCEEEEEECCEEE
Q ss_conf 53320110142499999998887655533101056899899999999999974895899999974140238999799785
Q gi|254780618|r 88 VANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIVGKTVILDVMEDSALMGGFIVEIGAHQI 167 (186)
Q Consensus 88 ~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~~~~~i~l~~~vD~slIGG~~i~vg~~~i 167 (186)
++++|+..+++|+..|..++.+++|+..|+|+||.||+++|.++|++.+++++|++|++.++||||||||++|++||++|
T Consensus 85 ~~~~R~~~l~~I~~~f~~l~~e~~~~~~a~V~SA~~Ls~~q~~~i~~~L~~~~gk~V~l~~~VDpsLIGGivv~vgd~vi 164 (181)
T PRK13433 85 VENQLFINTRMILKKLYKKLLEYKNIVLGVVYSTEKLTKTQLKAIKKKISNKVNKKVELVNKIDPTLIGGIKVVVHNKVF 164 (181)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCEEEEECCEEE
T ss_conf 98873668999999999999997693699998788899999999999999996891689965675670816999999987
Q ss_pred EHHHHHHHHHHHHHHH
Q ss_conf 0279999999999852
Q gi|254780618|r 168 DASLRTQLLKLGCILK 183 (186)
Q Consensus 168 D~Si~~kL~~l~~~l~ 183 (186)
|+||++||++|+++|.
T Consensus 165 D~Sik~kL~~Lk~~L~ 180 (181)
T PRK13433 165 DGSIKAKLEALKKQMN 180 (181)
T ss_pred EHHHHHHHHHHHHHHC
T ss_conf 4779999999999856
No 10
>PRK13438 consensus
Probab=100.00 E-value=3.2e-40 Score=286.09 Aligned_cols=173 Identities=25% Similarity=0.350 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 45557999999999986399899999999999995069989998518452204565788998620466434689999985
Q gi|254780618|r 9 SDVPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFCAITANFLRILV 88 (186)
Q Consensus 9 ~~ia~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~sp~i~~~~K~~ii~~i~~~~~~~~~~~~fl~~L~ 88 (186)
..||+|||+|||++|.+++.++.|.++|..+..++ ++++|+.+|.||.++.++|..++..+. ++++.+.||+.+|+
T Consensus 6 ~~iA~rYA~ALf~lA~e~~~l~~~~~~l~~l~~l~-~~~~l~~~l~~P~i~~~~K~~il~~~~---~~~~~~~nfl~lL~ 81 (180)
T PRK13438 6 YAIAMRYAQALHELAKEQKSLDKWQEDLQNLSRLT-EDASVDEFLSNPKIVSARKHAVLAKLS---DIDPLMLNLVDMLV 81 (180)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-CCHHHHHHHHCCCCCHHHHHHHHHHHH---CCCHHHHHHHHHHH
T ss_conf 86489999999999987498999999999999997-697899997489999999999999986---66899999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCHHCEEEEEECCEEEE
Q ss_conf 33201101424999999988876555331010568998999999999999748958999999741402389997997850
Q gi|254780618|r 89 ANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIVGKTVILDVMEDSALMGGFIVEIGAHQID 168 (186)
Q Consensus 89 ~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~~~~~i~l~~~vD~slIGG~~i~vg~~~iD 168 (186)
+++|+.++++|+..|.+++.+.+|+..|+|+||.||+++|+++|++.+++++|+++.+.++|||+||||++|++||++||
T Consensus 82 ~~~R~~~l~~I~~~f~~l~~~~~gi~~a~VtsA~~Ls~~q~~~i~~~L~k~~gk~v~l~~~vDpsLIGG~vi~igd~viD 161 (180)
T PRK13438 82 ATRRLGIMRAISGEYNRLLNEARGVEDAIVTTAKPASEADTEIIRQQLSKITGKKINILTATDPGLIAGLKARIGDKLID 161 (180)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEECHHHHCCEEEEECCEEEE
T ss_conf 87848889999999999999845927899997988999999999999999878914899665806619169999999876
Q ss_pred HHHHHHHHHHHHHHHHC
Q ss_conf 27999999999985224
Q gi|254780618|r 169 ASLRTQLLKLGCILKEV 185 (186)
Q Consensus 169 ~Si~~kL~~l~~~l~~v 185 (186)
+|+++||++|+++|++-
T Consensus 162 ~Svk~kL~~L~~~L~~~ 178 (180)
T PRK13438 162 GSISRRLVLLQNEISQG 178 (180)
T ss_pred HHHHHHHHHHHHHHHHC
T ss_conf 65999999999998614
No 11
>pfam00213 OSCP ATP synthase delta (OSCP) subunit. The ATP D subunit from E. coli is the same as the OSCP subunit which is this family. The ATP D subunit from metazoa are found in family pfam00401.
Probab=100.00 E-value=2e-40 Score=287.45 Aligned_cols=171 Identities=37% Similarity=0.594 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 55799999999998639989999999999999506998999851845220456578899862046643468999998533
Q gi|254780618|r 11 VPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFCAITANFLRILVAN 90 (186)
Q Consensus 11 ia~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~sp~i~~~~K~~ii~~i~~~~~~~~~~~~fl~~L~~~ 90 (186)
||+|||+|||++|.+++.++.|.+++..+.+++.++|+|+.+|.||.++.++|..++.++|++ ++++.+.||+.+|+++
T Consensus 1 ia~rYA~ALf~~a~e~~~l~~v~~~l~~~~~~~~~~~~l~~~l~sp~i~~~~K~~~i~~~~~~-~~~~~~~nfl~~l~~~ 79 (171)
T pfam00213 1 IARRYAKALFELAKEKGSLDEVEEDLEALKAVLAENPDLREFLSNPLISAEEKKALLKAVFGG-KLSELTKNFLKLLAEN 79 (171)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHC
T ss_conf 964789999999987499999999999999999649899998659887999999999998510-0679999999999874
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCHHCEEEEEECCEEEEHH
Q ss_conf 20110142499999998887655533101056899899999999999974895899999974140238999799785027
Q gi|254780618|r 91 GRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIVGKTVILDVMEDSALMGGFIVEIGAHQIDAS 170 (186)
Q Consensus 91 ~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~~~~~i~l~~~vD~slIGG~~i~vg~~~iD~S 170 (186)
+|+.++++|+..|.+++.+.+|+..|+|+||.|||++|+++|++.+++++|+++++.++|||+||||++|++||++||+|
T Consensus 80 ~R~~~l~~I~~~f~~l~~~~~~~~~~~V~sA~~Ls~~q~~~i~~~L~~~~~~~v~l~~~vD~slIGG~~i~igd~viD~S 159 (171)
T pfam00213 80 GRLSLLPEIAEEFEELYNEHRGIVEATVTSAVPLSEEQLKALKAALEKKTGKKVKLETKVDPSLIGGVVVRVGDKVIDGS 159 (171)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHCEEEEEECCEEEEHH
T ss_conf 55111899999999999997597589999727999999999999999885556541666870140727999999987587
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999985
Q gi|254780618|r 171 LRTQLLKLGCIL 182 (186)
Q Consensus 171 i~~kL~~l~~~l 182 (186)
|+++|++|++.|
T Consensus 160 i~~~L~~l~~~L 171 (171)
T pfam00213 160 VRGKLERLKRAL 171 (171)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999999629
No 12
>PRK05758 F0F1 ATP synthase subunit delta; Validated
Probab=100.00 E-value=8.8e-40 Score=283.18 Aligned_cols=173 Identities=36% Similarity=0.523 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 44455579999999999863998999999999999950699899985184522045657889986204664346899999
Q gi|254780618|r 7 LFSDVPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFCAITANFLRI 86 (186)
Q Consensus 7 ~~~~ia~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~sp~i~~~~K~~ii~~i~~~~~~~~~~~~fl~~ 86 (186)
..+.||+|||+|||++|.+++.++.|.+++..+ ..+.++|+|+.||.||.++.++|..++.++|++. .+.||+.+
T Consensus 3 ~~~~iA~rYA~ALf~~A~e~~~l~~v~~~l~~~-~~l~~~~~l~~~l~~p~i~~~~K~~il~~l~~~~----~~~nfl~l 77 (175)
T PRK05758 3 ELSTVARPYAKALFEVALEKGQLDAWSEELTFL-AVVAENEDLAELLSSPVLSAEQKAELLIAVLDEA----GQGNFLKL 77 (175)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCC----CHHHHHHH
T ss_conf 126768999999999988759899999999999-9997598999998098989999999999997452----29999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCHHCEEEEEECCEE
Q ss_conf 85332011014249999999888765553310105689989999999999997489589999997414023899979978
Q gi|254780618|r 87 LVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIVGKTVILDVMEDSALMGGFIVEIGAHQ 166 (186)
Q Consensus 87 L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~~~~~i~l~~~vD~slIGG~~i~vg~~~ 166 (186)
|++++|+.++++|+..|.+++.+++|+..|+|+||.||+++|+++|++.+++++|++++++++|||+||||++|++||++
T Consensus 78 L~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~sA~~Ls~~q~~~i~~~l~~~~gk~v~l~~~vD~sliGG~vi~igd~v 157 (175)
T PRK05758 78 LAENGRLALLPEIAEQFEALLAEHENIVDAEVTSAFPLSEEQLDKLKAALEKRLGRKVKLNVKVDPSLIGGVIIKVGDRV 157 (175)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCHHHCEEEEEECCEE
T ss_conf 99888466799999999999998569799999978899999999999999999699731044467104172799999998
Q ss_pred EEHHHHHHHHHHHHHHHH
Q ss_conf 502799999999998522
Q gi|254780618|r 167 IDASLRTQLLKLGCILKE 184 (186)
Q Consensus 167 iD~Si~~kL~~l~~~l~~ 184 (186)
||+||+++|++|+++|+.
T Consensus 158 iD~Sik~kL~~l~~~Lk~ 175 (175)
T PRK05758 158 IDGSVRGKLERLKRALKS 175 (175)
T ss_pred EEHHHHHHHHHHHHHHCC
T ss_conf 757699999999998668
No 13
>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]
Probab=100.00 E-value=8.6e-39 Score=276.64 Aligned_cols=176 Identities=34% Similarity=0.498 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 44455579999999999863998999999999999950699899985184522045657889986204664346899999
Q gi|254780618|r 7 LFSDVPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFCAITANFLRI 86 (186)
Q Consensus 7 ~~~~ia~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~sp~i~~~~K~~ii~~i~~~~~~~~~~~~fl~~ 86 (186)
+.+.+|+|||+|||++|.|++.++.|.+++..+.++++.+|+|+.+|.||.++.++|..++.++|++. .++.+.|||.+
T Consensus 3 ~~~~va~~YA~ALf~~A~e~~~~~~~~~~L~~~~~i~~~~~~l~~ll~sp~~~~~~k~~li~~i~~~~-~~~~~~nfL~l 81 (178)
T COG0712 3 ELSTVARRYAKALFELAEEKGQLEEVEEELTFLAEILKNSPKLKQLLSSPAVSAEDKKELLISIFKKI-GDPLLQNFLRL 81 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_conf 26788899999999999987419999999999999982677699986485679899999999998433-85899999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCHHCEEEEEECCEE
Q ss_conf 85332011014249999999888765553310105689989999999999997489589999997414023899979978
Q gi|254780618|r 87 LVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIVGKTVILDVMEDSALMGGFIVEIGAHQ 166 (186)
Q Consensus 87 L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~~~~~i~l~~~vD~slIGG~~i~vg~~~ 166 (186)
+++|+|+.+++.|+..|..+.++++|+..|+|+||.||+++|+++|.+.+++++|+++++.++||||||||++|++||++
T Consensus 82 l~en~Rl~~l~~i~~~~~~l~~~~~~~~~a~V~SA~~Ls~~q~~~l~~~l~k~~~~~v~i~~~VD~sliGG~iI~vgd~v 161 (178)
T COG0712 82 LAENKRLNLLPEILEEFLKLAAESRGIVEAEVTSAFELSDEQLTKLEAKLEKKFGKKVKLNNKIDPSLIGGLIIKVGDEV 161 (178)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCCEEEEECCEE
T ss_conf 99754164699999999999999629068999866889999999999999999589723786677788185699989999
Q ss_pred EEHHHHHHHHHHHHHHH
Q ss_conf 50279999999999852
Q gi|254780618|r 167 IDASLRTQLLKLGCILK 183 (186)
Q Consensus 167 iD~Si~~kL~~l~~~l~ 183 (186)
||+|++++|++++..|+
T Consensus 162 iD~Svr~~L~~l~~~l~ 178 (178)
T COG0712 162 IDGSVRGKLKRLAKALK 178 (178)
T ss_pred EECCHHHHHHHHHHHCC
T ss_conf 70319999999998519
No 14
>PRK13441 F0F1 ATP synthase subunit delta; Provisional
Probab=100.00 E-value=2e-38 Score=274.19 Aligned_cols=174 Identities=17% Similarity=0.320 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHC--CCCCHHHHHHHH
Q ss_conf 445557999999999986399899999999999995069989998518452204565788998620--466434689999
Q gi|254780618|r 8 FSDVPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVIDDLVKD--AHFCAITANFLR 85 (186)
Q Consensus 8 ~~~ia~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~sp~i~~~~K~~ii~~i~~~--~~~~~~~~~fl~ 85 (186)
++++|+|||+|||++|.+.+.++.|.+++..+.+++. +++.|+.||.+++++|..++..+++. .++++.+.||+.
T Consensus 3 ~s~iA~rYA~ALf~~A~e~~~l~~~~~~l~~~~~~~~---~~~~~l~~p~i~~~~k~~~l~~~~~~~~~~~~~~~~nfl~ 79 (180)
T PRK13441 3 YSAIASKYARALLNVAKELEKTEEYGEFLDLVCQIYE---SAKEFFDNPIIKPEKKVSLIKEIMKEFGQEMDEFFENFLN 79 (180)
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 7622688999999998864989999999999999999---8999985899999999999999999862201499999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCHHCEEEEEECCE
Q ss_conf 98533201101424999999988876555331010568998999999999999748958999999741402389997997
Q gi|254780618|r 86 ILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIVGKTVILDVMEDSALMGGFIVEIGAH 165 (186)
Q Consensus 86 ~L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~~~~~i~l~~~vD~slIGG~~i~vg~~ 165 (186)
+|++++|++++++|++.|..++.+++|+..|+|+||.|||++|.++|++.+++.+|+++.++++|||+|||||+|++||+
T Consensus 80 lL~~~~R~~~l~~I~~~f~~l~~~~~~~~~a~V~sA~~Ls~~q~~~i~~~l~~~~~k~v~l~~~vD~sLIGG~~i~vg~~ 159 (180)
T PRK13441 80 LVFENKRQKFIPQIRALYKYAKIESENKIPVNVTTAHELSDEELKVISKFVRKYTNRDPVFEETIDESLIAGAVIEFEGK 159 (180)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHHCEEEEEECCE
T ss_conf 99987759999999999999999977916999998079999999999999999878951798530826738279999999
Q ss_pred EEEHHHHHHHHHHHHHHHH
Q ss_conf 8502799999999998522
Q gi|254780618|r 166 QIDASLRTQLLKLGCILKE 184 (186)
Q Consensus 166 ~iD~Si~~kL~~l~~~l~~ 184 (186)
+||+||++||++|+++|.+
T Consensus 160 viD~Sv~~kL~~l~~~Llk 178 (180)
T PRK13441 160 TLDVSVKGRLKNIAREVLR 178 (180)
T ss_pred EEEHHHHHHHHHHHHHHHH
T ss_conf 8757599999999999874
No 15
>PRK08474 F0F1 ATP synthase subunit delta; Validated
Probab=100.00 E-value=3.1e-36 Score=259.72 Aligned_cols=169 Identities=24% Similarity=0.311 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 45557999999999986399899999999999995069989998518452204565788998620466434689999985
Q gi|254780618|r 9 SDVPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFCAITANFLRILV 88 (186)
Q Consensus 9 ~~ia~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~sp~i~~~~K~~ii~~i~~~~~~~~~~~~fl~~L~ 88 (186)
.-||+|||+|||++|.++ +++.|.++|..+..++. +|+|..++.||.++.++|.+++.++|++ .++.+.||+.+|+
T Consensus 3 ~~IArrYAkALfe~a~e~-~l~~~~~~L~~l~~~~~-~~~l~~~l~~P~i~~~~K~~~l~~i~~~--~~~~~~NFl~lL~ 78 (176)
T PRK08474 3 ELIAKRYAKALIESSSSA-ELNDILSNLKILSSAFV-DPKFKEIISSPEISKEQKMEFLLSFVKD--ANAKFQNFIKLLA 78 (176)
T ss_pred HHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHC-CHHHHHHHHCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_conf 173789999999997555-79999999999999977-9789999868999999999999999844--4789999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCHHCEEEEEECCEEEE
Q ss_conf 33201101424999999988876555331010568998999999999999748958999999741402389997997850
Q gi|254780618|r 89 ANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIVGKTVILDVMEDSALMGGFIVEIGAHQID 168 (186)
Q Consensus 89 ~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~~~~~i~l~~~vD~slIGG~~i~vg~~~iD 168 (186)
+|+|+.++|+|+..|..++.+++|+..|+|+||.|||++|+++|++.|++++|+++++++.+|| |||++|++||.+||
T Consensus 79 en~Rl~~L~~I~~~f~~l~~~~~~~~~a~V~SA~~Ls~~q~~~i~~~L~kk~g~~v~l~~~~d~--iGGv~i~vgd~~iD 156 (176)
T PRK08474 79 ENKRLELIPAIAKELERQLALKENEYVGVVYSKEELSQETLKKLEEKLSKKFNAKIKLKQKKSD--YDGIKVEVEDLGVE 156 (176)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEECC--CCCEEEEECCEEEE
T ss_conf 8784868999999999999997790389998799999999999999999987891699962468--78779999999998
Q ss_pred HHHHHHHHHHHHHHHHC
Q ss_conf 27999999999985224
Q gi|254780618|r 169 ASLRTQLLKLGCILKEV 185 (186)
Q Consensus 169 ~Si~~kL~~l~~~l~~v 185 (186)
+|++ +++++++|++.
T Consensus 157 ~S~~--~~rl~~ql~~~ 171 (176)
T PRK08474 157 VSFS--KDRLKNQLIEY 171 (176)
T ss_pred EEEE--HHHHHHHHHHH
T ss_conf 3221--99999999999
No 16
>KOG1662 consensus
Probab=100.00 E-value=7.4e-34 Score=244.05 Aligned_cols=175 Identities=34% Similarity=0.581 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 55579999999999863998999999999999950699899985184522045657889986204664346899999853
Q gi|254780618|r 10 DVPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFCAITANFLRILVA 89 (186)
Q Consensus 10 ~ia~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~sp~i~~~~K~~ii~~i~~~~~~~~~~~~fl~~L~~ 89 (186)
++.++||.|||++|..++.+|.+..++..+.++++.+|+|.+|+.||.++.+.|..+|+++.++.++.+.+.||+.+|++
T Consensus 32 G~eG~YAtaLY~AA~K~~~ld~vetdL~kl~~v~k~~pk~~~f~~nP~l~~~~k~~~i~di~~~~~~~~~t~NflnlLae 111 (210)
T KOG1662 32 GLEGRYATALYSAAVKNSKLDQVETDLNKLEQVLKTDPKFAQFVLNPTLTREKKKTAIDDIVEKLKLAPLTKNFLNLLAE 111 (210)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 46425999999999754349899999999999985196999884387402688998999999984566767789999997
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHH--CCEEEEEEEECCCHHCEEEEEECCEEE
Q ss_conf 320110142499999998887655533101056899899999999999974--895899999974140238999799785
Q gi|254780618|r 90 NGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIV--GKTVILDVMEDSALMGGFIVEIGAHQI 167 (186)
Q Consensus 90 ~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~~--~~~i~l~~~vD~slIGG~~i~vg~~~i 167 (186)
|+|++.+..|..+|..++++++|.+.++|+||.||+..+..+|+..+++.+ |+++.+++.|||||+||+++++||+.+
T Consensus 112 NgRL~~l~~Ivk~F~~lm~ahrGev~~~VtSa~pLd~~~~k~l~~~l~k~l~~gk~l~v~~~vdPSI~GGliVeiGdK~v 191 (210)
T KOG1662 112 NGRLNNLTEIVKAFETLMNAHRGEVKVEVTSAEPLDAKQLKQLEKALQKILGGGKKLKVENKVDPSIIGGLIVEIGDKYV 191 (210)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHCCEEEEECCEEE
T ss_conf 38334599999999999997378458999843408868899999999998568866889862175561405899768567
Q ss_pred EHHHHHHHHHHHHHHHH
Q ss_conf 02799999999998522
Q gi|254780618|r 168 DASLRTQLLKLGCILKE 184 (186)
Q Consensus 168 D~Si~~kL~~l~~~l~~ 184 (186)
|.||++|++++.+.|.+
T Consensus 192 DmSI~tr~q~l~~ll~~ 208 (210)
T KOG1662 192 DMSIKTRLQKLNKLLEE 208 (210)
T ss_pred EEEHHHHHHHHHHHHHC
T ss_conf 63299999999998644
No 17
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=99.97 E-value=1.3e-29 Score=216.12 Aligned_cols=168 Identities=23% Similarity=0.343 Sum_probs=163.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCH
Q ss_conf 99999999863998999999999999950699899985184522045657889986204664346899999853320110
Q gi|254780618|r 16 SHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFCAITANFLRILVANGRLSV 95 (186)
Q Consensus 16 A~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~sp~i~~~~K~~ii~~i~~~~~~~~~~~~fl~~L~~~~r~~~ 95 (186)
..|++..|...|.++.|.++|..|.+++..+|+|+..|.+|..|.+.|..++.++++ +++++.+..++..++.+.|..-
T Consensus 104 v~A~~~~A~~~g~Ld~VEdELF~~~r~l~~~~eLr~aLsd~~~~~~~k~~Lv~~Ll~-gk~~~~T~~Lv~~~V~~~rgr~ 182 (271)
T PRK13430 104 VRALLRSAERQGALDQVEDELFRFGRILASNPELRLALTDRTAPAEAKRELLARLLY-GKATPVTERLAEQAVGRPRGRR 182 (271)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHCCCCCC
T ss_conf 999998764359867899999999999816999999856889998999999999967-8787999999999973756899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCHHCEEEEEECCEEEEHHHHHHH
Q ss_conf 14249999999888765553310105689989999999999997489589999997414023899979978502799999
Q gi|254780618|r 96 LPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIVGKTVILDVMEDSALMGGFIVEIGAHQIDASLRTQL 175 (186)
Q Consensus 96 l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~~~~~i~l~~~vD~slIGG~~i~vg~~~iD~Si~~kL 175 (186)
++.++..|.+....+++...++|+||.||+++|.++|...|+++||++|.++++|||+||||++|++||.+||+||++||
T Consensus 183 ~~~~l~~~~~~aA~~r~~~vA~VtsA~~Ls~~Q~~~L~~~L~~~~G~~v~l~~~VDp~llGG~~i~vGd~viDgSv~~rL 262 (271)
T PRK13430 183 IEEGLDELSNLAAARRGRSVATVTTAVPLSDEQKQRLAAALSRIYGRQIHLNSEVDPSLLGGMRVQVGDEVIDGSVAGRL 262 (271)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCHHHCCEEEEECCEEEHHHHHHHH
T ss_conf 89999999999998669816999756679999999999999999789217885677034183599889996538599999
Q ss_pred HHHHHHHHH
Q ss_conf 999998522
Q gi|254780618|r 176 LKLGCILKE 184 (186)
Q Consensus 176 ~~l~~~l~~ 184 (186)
+++++.|..
T Consensus 263 ~~lr~~Lag 271 (271)
T PRK13430 263 ERLRRRLAG 271 (271)
T ss_pred HHHHHHHCC
T ss_conf 999987476
No 18
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=99.95 E-value=1.1e-25 Score=190.21 Aligned_cols=170 Identities=23% Similarity=0.300 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHC
Q ss_conf 999999999986399899999999999995069989998518452204565788998620-4664346899999853320
Q gi|254780618|r 14 RYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVIDDLVKD-AHFCAITANFLRILVANGR 92 (186)
Q Consensus 14 ~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~sp~i~~~~K~~ii~~i~~~-~~~~~~~~~fl~~L~~~~r 92 (186)
-=..|++..|...|.++.|.++|+.|..++..+|+|+..|.+|..|.+.|..++.++++. +++++.+..++.-++...|
T Consensus 274 La~~AlL~~Ae~~G~Ld~VEDELFRf~Ril~~~~eL~~aLsD~~ap~~~K~~Ll~~LL~g~~kV~~vT~~L~~q~V~~~r 353 (445)
T PRK13428 274 VARLALLERAERAGQVDEVEDQLFRFSRILDVQPRLAILLGDYTVPAEGRVGLLRKVLDSAATVNPVVVALLSQTVELLR 353 (445)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99999999888669825889999999999658989998747888986889999999972667778899999999861736
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCHHCEEEEEECCEEEEHHHH
Q ss_conf 11014249999999888765553310105689989999999999997489589999997414023899979978502799
Q gi|254780618|r 93 LSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIVGKTVILDVMEDSALMGGFIVEIGAHQIDASLR 172 (186)
Q Consensus 93 ~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~~~~~i~l~~~vD~slIGG~~i~vg~~~iD~Si~ 172 (186)
..-++..+..|.++....++...+.|+||.|||++|..+|...|.+.||+++.++..|||+++||++|+|||.+||||+.
T Consensus 354 gr~~~~~l~~l~~lAAarR~r~VA~V~sAv~Lsd~Q~~RL~~~L~riYGr~v~l~v~VDP~vLGGl~VrVGDEVIDGSva 433 (445)
T PRK13428 354 GQRAEEAVLFLAELAVARRGEVVAQVSAAAELSDAQRTRLTEVLSRIYGHPVSVQLHIDPELLGGLSIAVGDEVIDGSLS 433 (445)
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCEEEEECCEEECCHHH
T ss_conf 89867899999999998608806999724779999999999999998687226863457410177389878843416298
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999852
Q gi|254780618|r 173 TQLLKLGCILK 183 (186)
Q Consensus 173 ~kL~~l~~~l~ 183 (186)
++|...+..|-
T Consensus 434 ~RLa~Ar~~Lp 444 (445)
T PRK13428 434 SRLAAAEAQLP 444 (445)
T ss_pred HHHHHHHHHCC
T ss_conf 89999996488
No 19
>TIGR01145 ATP_synt_delta ATP synthase F1, delta subunit; InterPro: IPR000711 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis . These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta in bacterial and chloroplast ATPase, or OSCP (oligomycin sensitivity conferral protein) in mitochondrial ATPase (note that in mitochondria there is a different delta subunit, IPR001469 from INTERPRO). The OSCP/delta subunit appears to be part of the peripheral stalk that holds the F1 complex alpha3beta3 catalytic core stationary against the torque of the rotating central stalk, and links subunit A of the F0 complex with the F1 complex. In mitochondria, the peripheral stalk consists of OSCP, as well as F0 components F6, B and D. In bacteria and chloroplasts the peripheral stalks have different subunit compositions: delta and two copies of F0 component B (bacteria), or delta and F0 components B and B (chloroplasts) , . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0046933 hydrogen ion transporting ATP synthase activity rotational mechanism, 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0016469 proton-transporting two-sector ATPase complex.
Probab=99.86 E-value=2.9e-21 Score=160.91 Aligned_cols=171 Identities=30% Similarity=0.480 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 55799999999998639989999999999999506998999851845220456578899862046643468999998533
Q gi|254780618|r 11 VPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFCAITANFLRILVAN 90 (186)
Q Consensus 11 ia~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~sp~i~~~~K~~ii~~i~~~~~~~~~~~~fl~~L~~~ 90 (186)
++++||.|+|++|.++..++.|.+++..+..++...+++..++.+|.++.+.+..++..+++. .++....|++.+++++
T Consensus 1 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 79 (172)
T TIGR01145 1 VARPYAEALFELANEKSSLEEWGEELNFVKEVLKNDKELKKLLSGPLLSAEKKKELIKNVFGE-QLDESGLNLLLLLVEN 79 (172)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC
T ss_conf 950578999998863668999999999999996222889987515453167889999998521-1024677888877622
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCC-EEEEEEEECCCHHCEEEEEECCEEEEH
Q ss_conf 2011014249999999888765553310105689989999999999997489-589999997414023899979978502
Q gi|254780618|r 91 GRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIVGK-TVILDVMEDSALMGGFIVEIGAHQIDA 169 (186)
Q Consensus 91 ~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~~~~-~i~l~~~vD~slIGG~~i~vg~~~iD~ 169 (186)
+|+..+++++..|..+.....+...+.++++.++++++...+...+.+..++ ++.+.+.+|++++||+++++|+.++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~d~ 159 (172)
T TIGR01145 80 GRLAALPDILDEFLKLSYEAEATADVEVISAVPLTEEQLAKLAEKLEKKTGAAKVKLNLKVDKDLLGGLIIKIGDRVIDG 159 (172)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 32577799999999998875345566665421002778999999999876565555542210345500131002212202
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 7999999999985
Q gi|254780618|r 170 SLRTQLLKLGCIL 182 (186)
Q Consensus 170 Si~~kL~~l~~~l 182 (186)
|++++|+++...+
T Consensus 160 ~~~~~l~~~~~~l 172 (172)
T TIGR01145 160 SVRGQLKRLSDLL 172 (172)
T ss_pred HHHHHHHHHHHCC
T ss_conf 5667777654119
No 20
>PRK13431 F0F1 ATP synthase subunit delta; Provisional
Probab=99.43 E-value=2.3e-12 Score=102.12 Aligned_cols=169 Identities=12% Similarity=0.179 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHH-HHHHHHCCCCCHHHHHHHH
Q ss_conf 4455579999999999863-9989999999999999506998999851845220456578-8998620466434689999
Q gi|254780618|r 8 FSDVPGRYSHSLFGVSNEE-GVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSV-IDDLVKDAHFCAITANFLR 85 (186)
Q Consensus 8 ~~~ia~~YA~AL~~~a~e~-~~l~~v~~~l~~i~~~~~~~~~l~~~l~sp~i~~~~K~~i-i~~i~~~~~~~~~~~~fl~ 85 (186)
++-|+++|++||-+...+. ..+|+....|..++.+++. ..|++++.+|.++..++..+ +.+-....+.+..+.||++
T Consensus 4 l~~IsK~Y~kAL~~~~k~~~~~LEE~v~~Lk~la~a~k~-~K~~~Ii~s~s~~vk~ev~f~iLe~i~~~ka~s~~~nf~~ 82 (180)
T PRK13431 4 LKVISKHYAKALKNHTKGDLALLEEIVVGLKNVAEAIKL-HKLNQVLAHVSLKVKKEVVFEILEKITSTKACSVLKPVME 82 (180)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 778999999999872301688999999999999999989-8899999623477889999999998722037888889999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCHHCEEEEEECCE
Q ss_conf 98533201101424999999988876555331010568998999999999999748958999999741402389997997
Q gi|254780618|r 86 ILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIVGKTVILDVMEDSALMGGFIVEIGAH 165 (186)
Q Consensus 86 ~L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~~~~~i~l~~~vD~slIGG~~i~vg~~ 165 (186)
++++++|+.+++.|..+.. ...+.+..|++.+..++++..++++++++++++|.++.+...+-.+ -|+.+-|.|.
T Consensus 83 v~a~~~RLdl~e~i~~eLs---~~~kkey~A~Llv~e~ldn~~Le~Iq~kl~~klgv~l~i~Q~~~~k--~GikLsVedL 157 (180)
T PRK13431 83 VVLKNNRLDMLELIAEELS---FDSKRTLEATLLVPEKLENNELEAVQQKLQARFNAPVEIAQDTWSK--KGVSLSVSSL 157 (180)
T ss_pred HHHHHCHHHHHHHHHHHHH---HHHHCHHHHEEECCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHCC--CCEEEEEECC
T ss_conf 9997142579999998721---3340124401426032216899999999999819984752465415--7738987426
Q ss_pred EEEHHHH--HHHHHHHHHH
Q ss_conf 8502799--9999999985
Q gi|254780618|r 166 QIDASLR--TQLLKLGCIL 182 (186)
Q Consensus 166 ~iD~Si~--~kL~~l~~~l 182 (186)
.+.-|.+ .-++++++++
T Consensus 158 gvEisFSke~f~~dl~nhi 176 (180)
T PRK13431 158 DLEIGFSKEDILKKIEKQV 176 (180)
T ss_pred CCEEEECHHHHHHHHHHHH
T ss_conf 7167655999999999988
No 21
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=98.89 E-value=3.1e-08 Score=74.92 Aligned_cols=71 Identities=20% Similarity=0.292 Sum_probs=66.6
Q ss_pred HHHHHHEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCHHCEEEEEECCEEEEHHHHHHHHHHHHHH
Q ss_conf 55533101056899899999999999974895899999974140238999799785027999999999985
Q gi|254780618|r 112 NEVMAFVRAFSGLSLLQQNKLGECLEKIVGKTVILDVMEDSALMGGFIVEIGAHQIDASLRTQLLKLGCIL 182 (186)
Q Consensus 112 ~~~~~~V~sa~~ls~~~~~~i~~~l~~~~~~~i~l~~~vD~slIGG~~i~vg~~~iD~Si~~kL~~l~~~l 182 (186)
+...+.|+|+.||+++++++|...+...+|.++.+.+.+||+||+|+.+.+|+..+++|+...|+.|...+
T Consensus 175 ~~~~v~v~sa~~L~~~~~~~i~~~l~~~lg~~~~l~F~~dp~Li~GieL~~gg~~i~Ws~~~yL~~le~~~ 245 (246)
T TIGR03321 175 SGNPVLVRSAFELPEEQREQIRDTIRETLGPEIRLRFQTEPDLIGGIELTAGGHKLAWSVDDYLESLEEDV 245 (246)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEECCEEEECCHHHHHHHHHHHC
T ss_conf 89972885189999999999999999973888861464273400474887689533034999999997516
No 22
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=96.62 E-value=0.055 Score=33.66 Aligned_cols=78 Identities=13% Similarity=0.111 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 98999999999999950699899985184522045657889986204664346899999853320110142499999998
Q gi|254780618|r 28 VLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFCAITANFLRILVANGRLSVLPAIIKSFRAVC 107 (186)
Q Consensus 28 ~l~~v~~~l~~i~~~~~~~~~l~~~l~sp~i~~~~K~~ii~~i~~~~~~~~~~~~fl~~L~~~~r~~~l~~I~~~f~~~~ 107 (186)
..-.+.++|..+..++..++.||..|.+|.-+.+.|..++..+|+ +++++.+..++.-++. .|++-=.++...++.+-
T Consensus 26 ~~~~la~eLF~v~~~Ld~~~~LRrALtDpsr~~~~k~~Lv~~lfg-~kvs~~a~~v~~~~v~-~RWS~~~DL~~alE~L~ 103 (271)
T PRK13430 26 DAARTGTELFAVVAVLDGERSLRRALTDPAAPPESKVELVKRLFG-GKVSPPTLEVVSDAVR-QRWSRPRDLRDALEELG 103 (271)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHC-CCCCHHHHHHHHHHHH-HCCCCHHHHHHHHHHHH
T ss_conf 699999999999999745577888717888885779999999865-6787899999999998-41698678999999999
No 23
>pfam01991 vATP-synt_E ATP synthase (E/31 kDa) subunit. This family includes the vacuolar ATP synthase E subunit, as well as the archaebacterial ATP synthase E subunit.
Probab=96.33 E-value=0.039 Score=34.63 Aligned_cols=114 Identities=18% Similarity=0.278 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCC---CCHHHHHHHHHHHH
Q ss_conf 456578899862046643468999998533201101424999999988876555331010568---99899999999999
Q gi|254780618|r 61 KDRRSVIDDLVKDAHFCAITANFLRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSG---LSLLQQNKLGECLE 137 (186)
Q Consensus 61 ~~K~~ii~~i~~~~~~~~~~~~fl~~L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~---ls~~~~~~i~~~l~ 137 (186)
..|..++++++... ...+ .-+..+. .-.+.++...........+...+.|.+... +.+.....+.+.+.
T Consensus 68 ~ak~e~i~~v~~~a-----~~kL-~~l~~d~--~~Y~~~L~~Li~~~~~~l~e~~v~v~~~~~D~~lv~~~~~~~~~~~~ 139 (195)
T pfam01991 68 NAREELLDEVFEEA-----KEKL-ANLPEDK--DEYKDLLKDLIVQALVKLGEPKVIVRSRKEDEELVKSALDKAKEEYK 139 (195)
T ss_pred HHHHHHHHHHHHHH-----HHHH-HHHCCCH--HHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999-----9999-8620677--78999999999999997399937988757339999999999999998
Q ss_pred HHHCCEEEEEEEECCCHHCEEEEEE--CCEEEEHHHHHHHHHHHHHH
Q ss_conf 9748958999999741402389997--99785027999999999985
Q gi|254780618|r 138 KIVGKTVILDVMEDSALMGGFIVEI--GAHQIDASLRTQLLKLGCIL 182 (186)
Q Consensus 138 ~~~~~~i~l~~~vD~slIGG~~i~v--g~~~iD~Si~~kL~~l~~~l 182 (186)
...+........-+++.+|||++.- |.-.+|.|+.++|+.+...+
T Consensus 140 ~~~~~~~~~~~~~~~~~~GGvil~s~dG~I~~dNT~e~rl~~~~~~~ 186 (195)
T pfam01991 140 EKTGKDTVETIGDNIDCIGGVVLETEDGKIRVDNTLDARLERVFEQL 186 (195)
T ss_pred HHHCCCCCEECCCCCCCCCCEEEEECCCCEEEECCHHHHHHHHHHHH
T ss_conf 86088763003899776784699967993788562999999999970
No 24
>PRK09098 type III secretion system protein HrpB; Validated
Probab=95.00 E-value=0.12 Score=31.38 Aligned_cols=94 Identities=21% Similarity=0.207 Sum_probs=63.0
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCH-HCEEEEEECCEE
Q ss_conf 5332011014249999999888765553310105689989999999999997489589999997414-023899979978
Q gi|254780618|r 88 VANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIVGKTVILDVMEDSAL-MGGFIVEIGAHQ 166 (186)
Q Consensus 88 ~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~~~~~i~l~~~vD~sl-IGG~~i~vg~~~ 166 (186)
...++-.++..+...+...+ .+...++|.+. |-+-+....-...+...+|....+...-||+| -||-+++.+.=.
T Consensus 128 ~~e~~~aL~~ra~~~l~~~v---~~~~~l~VRVh-PdD~d~ar~a~~~l~~~~~~~~~i~Vv~D~~L~~G~CI~Etd~G~ 203 (229)
T PRK09098 128 HGEDPAALFARAAQTLEGVL---DGASYLTVRVH-PADLDAARRAFGALAAEGGRNVPVEVVGDPRLAPGACVCEWDFGV 203 (229)
T ss_pred HHCCHHHHHHHHHHHHHHHH---CCCCEEEEEEC-HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEECCCCE
T ss_conf 71398889999999999986---24662899988-877999999899998646987213762278789998688358753
Q ss_pred EEHHHHHHHHHHHHHHHHC
Q ss_conf 5027999999999985224
Q gi|254780618|r 167 IDASLRTQLLKLGCILKEV 185 (186)
Q Consensus 167 iD~Si~~kL~~l~~~l~~v 185 (186)
||+|+..||+.|+..+..+
T Consensus 204 IDAsL~~QL~aLr~ai~ra 222 (229)
T PRK09098 204 FDASLDTQLRALRRAIARA 222 (229)
T ss_pred EECCHHHHHHHHHHHHHHH
T ss_conf 7433999999999999998
No 25
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=94.97 E-value=0.35 Score=28.35 Aligned_cols=78 Identities=23% Similarity=0.242 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCH-HCEEEEEECCEEEEHHHHHHHHHHHHHHHH
Q ss_conf 9888765553310105689989999999999997489589999997414-023899979978502799999999998522
Q gi|254780618|r 106 VCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIVGKTVILDVMEDSAL-MGGFIVEIGAHQIDASLRTQLLKLGCILKE 184 (186)
Q Consensus 106 ~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~~~~~i~l~~~vD~sl-IGG~~i~vg~~~iD~Si~~kL~~l~~~l~~ 184 (186)
.+...++...++|++- |-+=+....=+..+...++..-.+...-|+.| -||.+|..+.-.||+||.+||++++..+.+
T Consensus 190 ~l~evk~~~~I~I~Vn-p~Dye~v~e~k~el~~~l~~~~~i~I~~D~~l~~GgciIeTd~G~IDa~i~tqL~~ike~lle 268 (268)
T PRK06669 190 LLKEVKDATDITIRVN-PEDYEYVKEQKDELISLLDSEAHLKIYEDEAISKGGCIIETDFGRIDARIDSQLKQLKEKLLE 268 (268)
T ss_pred HHHHHCCCCEEEEEEC-HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEECCCCEEEHHHHHHHHHHHHHHCC
T ss_conf 9997313781899988-888999998489999874577776997678889998799669980530099999999998529
No 26
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=93.82 E-value=0.47 Score=27.49 Aligned_cols=80 Identities=23% Similarity=0.293 Sum_probs=66.8
Q ss_pred HCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 63998999999999999950699899985184522045657889986204664346899999853320110142499999
Q gi|254780618|r 25 EEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFCAITANFLRILVANGRLSVLPAIIKSFR 104 (186)
Q Consensus 25 e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~sp~i~~~~K~~ii~~i~~~~~~~~~~~~fl~~L~~~~r~~~l~~I~~~f~ 104 (186)
++..+-...++|..+..++...+.++..|..|.-+.+.|..++..+|+ +++++.+..++.-.+. .|++-=.+......
T Consensus 195 d~~~l~~la~eL~~V~~lL~re~~lrr~Ltdpa~~~~~k~~L~~rL~~-gkvs~~al~vl~~AV~-~RWS~~~DL~dale 272 (445)
T PRK13428 195 DNDGLTTLADELVSVAKLLDREAVLTKHLTEPAEDAAPKIRLIERLLS-GKVGAPTLEVLRTAVS-QRWSANSDLIDALE 272 (445)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC-CCCCHHHHHHHHHHHH-HCCCCHHHHHHHHH
T ss_conf 246799999999999999841046777518978795479999999857-8757899999999998-32598456999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780618|r 105 AV 106 (186)
Q Consensus 105 ~~ 106 (186)
.+
T Consensus 273 ~L 274 (445)
T PRK13428 273 HV 274 (445)
T ss_pred HH
T ss_conf 99
No 27
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=93.52 E-value=0.7 Score=26.37 Aligned_cols=52 Identities=21% Similarity=0.371 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHC-CEEEEEEEECCCHHCEEEEEE--CCEEEEHHHHHHHHHHHHHHH
Q ss_conf 999999999748-958999999741402389997--997850279999999999852
Q gi|254780618|r 130 NKLGECLEKIVG-KTVILDVMEDSALMGGFIVEI--GAHQIDASLRTQLLKLGCILK 183 (186)
Q Consensus 130 ~~i~~~l~~~~~-~~i~l~~~vD~slIGG~~i~v--g~~~iD~Si~~kL~~l~~~l~ 183 (186)
......+.+.++ ..+.+ .-..+.+|||++.. |.-.+|.|+.++|+.++..+.
T Consensus 135 ~~~~~~~~~~~~~~~v~~--~~~~~~~GGvil~s~dG~I~vdnT~esrl~~~~e~l~ 189 (198)
T PRK03963 135 SSRLEEIRDELGDVSIEL--GEPISTIGGVIVETKDGSVRVDNTFEARMERFEGEIR 189 (198)
T ss_pred HHHHHHHHHHHCCCCEEE--CCCCCCCCEEEEEECCCCEEEECCHHHHHHHHHHHHH
T ss_conf 999999998725674441--8985657827999779977985529999999999869
No 28
>PRK06328 type III secretion system protein; Validated
Probab=93.37 E-value=0.74 Score=26.21 Aligned_cols=76 Identities=21% Similarity=0.163 Sum_probs=57.4
Q ss_pred HHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCHH-CEEEEEECCEEEEHHHHHHHHHHHHHHHH
Q ss_conf 887655533101056899899999999999974895899999974140-23899979978502799999999998522
Q gi|254780618|r 108 MYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIVGKTVILDVMEDSALM-GGFIVEIGAHQIDASLRTQLLKLGCILKE 184 (186)
Q Consensus 108 ~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~~~~~i~l~~~vD~slI-GG~~i~vg~~~iD~Si~~kL~~l~~~l~~ 184 (186)
...++...++|.+. |-+-+-...-...|...++....+....||.|= ||-+|+..-=.||+||.+||+.|++.|.+
T Consensus 126 ~~vr~~~~V~IrV~-P~d~~~V~~~~~~L~~~~~~~~~L~i~~D~~l~~GgCiIETe~G~VDAsldtQL~aL~~Al~~ 202 (223)
T PRK06328 126 KELTQNKHIIIHVN-PKDLAIVEQNRPELKKIVEYADSLILSPKADVTPGGCIIETEAGIVNAQLDVQLAALEKAFST 202 (223)
T ss_pred HHHHHCCEEEEEEC-HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEECCCCEEECCHHHHHHHHHHHHHH
T ss_conf 99861881799988-876999999899999746777762673089879998699558856961289999999999999
No 29
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=90.65 E-value=1.5 Score=24.15 Aligned_cols=104 Identities=15% Similarity=0.196 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 04565788998620466434689999985332011014249999999888765553310105689989999999999997
Q gi|254780618|r 60 MKDRRSVIDDLVKDAHFCAITANFLRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKI 139 (186)
Q Consensus 60 ~~~K~~ii~~i~~~~~~~~~~~~fl~~L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~ 139 (186)
-..|..+|+.+|... - .. |.-+-...+..++..++. ..+. ...+....+-+....+.+......
T Consensus 75 L~ak~e~i~~v~~~a--~---~~-L~~l~~~~~~~llk~ll~--------~~~~-~~~~v~~~~~d~~~v~~~~~~~~~- 138 (187)
T PRK02292 75 LNARKEVLEEVYNQV--E---DA-IASLPGDKREELLKNLLD--------ADDA-DGVRVYSRKDDEDLVKKLLDDYDS- 138 (187)
T ss_pred HHHHHHHHHHHHHHH--H---HH-HHCCCCHHHHHHHHHHHH--------HCCC-CCCEEEECCCCHHHHHHHHHHCCC-
T ss_conf 999999999999999--9---99-866891159999999998--------7489-884787556648899999875336-
Q ss_pred HCCEEEEEEEECCCHHCEEEEEE--CCEEEEHHHHHHHHHHHHHH-HHC
Q ss_conf 48958999999741402389997--99785027999999999985-224
Q gi|254780618|r 140 VGKTVILDVMEDSALMGGFIVEI--GAHQIDASLRTQLLKLGCIL-KEV 185 (186)
Q Consensus 140 ~~~~i~l~~~vD~slIGG~~i~v--g~~~iD~Si~~kL~~l~~~l-~~v 185 (186)
+..--+.+.+|||++.- |...+|.|+.+.|++++..+ ++|
T Consensus 139 ------~~~~~~id~~GG~iles~dG~i~~dnTfds~l~~~~e~~~~~v 181 (187)
T PRK02292 139 ------LEYAGNIDCIGGVVVESDDGRVRLNNTFDSILKDVWERSLKEI 181 (187)
T ss_pred ------CCCCCCCCCCCEEEEEECCCCEEEECCHHHHHHHHHHHHHHHH
T ss_conf ------6237877776606999559727982659999999999889999
No 30
>pfam02108 FliH Flagellar assembly protein FliH.
Probab=90.21 E-value=0.7 Score=26.37 Aligned_cols=55 Identities=27% Similarity=0.273 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCEEEEEEEECCCH-HCEEEEEECCEEEEHHHHHHHHHH
Q ss_conf 89989999999999997489589999997414-023899979978502799999999
Q gi|254780618|r 123 GLSLLQQNKLGECLEKIVGKTVILDVMEDSAL-MGGFIVEIGAHQIDASLRTQLLKL 178 (186)
Q Consensus 123 ~ls~~~~~~i~~~l~~~~~~~i~l~~~vD~sl-IGG~~i~vg~~~iD~Si~~kL~~l 178 (186)
-++.+..+.+++.+.... ....+....||++ -||.+|+.++-.+|+++.+|++.+
T Consensus 73 ~v~P~D~~~l~~~~~~~~-~~~~~~l~~D~~l~~Ggc~iet~~g~vDa~ietrl~~l 128 (128)
T pfam02108 73 RLNPDDLALVEEHLGDEL-KARGWRLVADPSLSRGGCRIESENGEIDATLETRWKAL 128 (128)
T ss_pred EECHHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCEEEEECCCEEECCHHHHHHCC
T ss_conf 988999999999886422-22774898689878998899978963872799998609
No 31
>PRK13386 fliH flagellar assembly protein H; Provisional
Probab=84.10 E-value=3.7 Score=21.61 Aligned_cols=59 Identities=19% Similarity=0.180 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCEEEEEEEECCCH-HCEEEEEECCEEEEHHHHHHHHHHHHHHHH
Q ss_conf 89989999999999997489589999997414-023899979978502799999999998522
Q gi|254780618|r 123 GLSLLQQNKLGECLEKIVGKTVILDVMEDSAL-MGGFIVEIGAHQIDASLRTQLLKLGCILKE 184 (186)
Q Consensus 123 ~ls~~~~~~i~~~l~~~~~~~i~l~~~vD~sl-IGG~~i~vg~~~iD~Si~~kL~~l~~~l~~ 184 (186)
-+..+....|........ + .....-||+| -||.+|..++-.+|+|+.+|+++.-..|++
T Consensus 168 ~LnP~D~~~v~~~~~e~~-~--~W~L~aD~~L~~GgCrv~t~~s~vDasletRl~~v~~~l~~ 227 (236)
T PRK13386 168 HLNPAEFGRLKDLAPEKV-Q--AWGLVADPSLSAGECRIVTDTSEADAGCEHRLDACMDAVKE 227 (236)
T ss_pred EECHHHHHHHHHHHHHHH-C--CCEEEECCCCCCCCEEEEECCCEEECCHHHHHHHHHHHHHH
T ss_conf 989889999999744031-2--86674479758888699858953531499999999999863
No 32
>PRK06937 type III secretion system protein; Reviewed
Probab=81.55 E-value=4.6 Score=20.98 Aligned_cols=80 Identities=26% Similarity=0.177 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCH-HCEEEEEECCEEEEHHHHHHHHHHHHHH
Q ss_conf 999888765553310105689989999999999997489589999997414-0238999799785027999999999985
Q gi|254780618|r 104 RAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIVGKTVILDVMEDSAL-MGGFIVEIGAHQIDASLRTQLLKLGCIL 182 (186)
Q Consensus 104 ~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~~~~~i~l~~~vD~sl-IGG~~i~vg~~~iD~Si~~kL~~l~~~l 182 (186)
........+...++|.++ |-+.+........+...+...-.+...-||+| -||.+++.+.=.+|+|+.+||+.|++.|
T Consensus 121 ~~al~~v~~~~~v~I~V~-P~d~~~v~~~~~~~~~~~~~~~~l~I~~D~~L~~g~CvlETe~G~VDasld~QL~aL~~A~ 199 (204)
T PRK06937 121 REALALVSNQKQVVVRVA-PDQAGAVREQIAKVLKDFPGVGYLEVVADARLDQGGCILETEVGIIDASLDGQLEALSRAF 199 (204)
T ss_pred HHHHHHHHCCCEEEEEEC-HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEECCCCEEECCHHHHHHHHHHHH
T ss_conf 999999735973999999-4669999999999997288885079852898899975995588469557999999999999
Q ss_pred HH
Q ss_conf 22
Q gi|254780618|r 183 KE 184 (186)
Q Consensus 183 ~~ 184 (186)
..
T Consensus 200 ~~ 201 (204)
T PRK06937 200 SS 201 (204)
T ss_pred HH
T ss_conf 87
No 33
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=77.98 E-value=6 Score=20.24 Aligned_cols=59 Identities=36% Similarity=0.385 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHH---HHHHCCEEEEEEEECCCHH-CEEEEEECCEEEEHHHHHHHHHHHHHHHHC
Q ss_conf 989999999999---9974895899999974140-238999799785027999999999985224
Q gi|254780618|r 125 SLLQQNKLGECL---EKIVGKTVILDVMEDSALM-GGFIVEIGAHQIDASLRTQLLKLGCILKEV 185 (186)
Q Consensus 125 s~~~~~~i~~~l---~~~~~~~i~l~~~vD~slI-GG~~i~vg~~~iD~Si~~kL~~l~~~l~~v 185 (186)
..++.+.+.+.+ .+..+.. +...-||++- ||.+|..+.=.+|+|+.+||..+++.+...
T Consensus 165 nP~d~e~i~~~~~~~~~~~~~~--l~l~~D~~l~~GgC~IeTe~G~iDasld~ql~~L~~~~~~~ 227 (234)
T COG1317 165 NPDDLEIIRQQLDEELSLLGWR--LELVADPALSPGGCIIETEFGIIDASLDTQLAALKRALLES 227 (234)
T ss_pred CHHHHHHHHHHHHHHHHHCCCE--EEECCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 8888999999988887424520--24325888789964998378614232999999999998766
No 34
>PRK05687 fliH flagellar assembly protein H; Validated
Probab=76.47 E-value=6.5 Score=19.97 Aligned_cols=62 Identities=16% Similarity=0.160 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCEEEEEEEECCCHH-CEEEEEECCEEEEHHHHHHHHHHHHHHHHC
Q ss_conf 899899999999999974895899999974140-238999799785027999999999985224
Q gi|254780618|r 123 GLSLLQQNKLGECLEKIVGKTVILDVMEDSALM-GGFIVEIGAHQIDASLRTQLLKLGCILKEV 185 (186)
Q Consensus 123 ~ls~~~~~~i~~~l~~~~~~~i~l~~~vD~slI-GG~~i~vg~~~iD~Si~~kL~~l~~~l~~v 185 (186)
-+..+....+.+.+..-+. .-......||+|- ||.+|..++-.+|+|+.+|++++-..|...
T Consensus 183 ~lhPdD~~~V~~~l~~el~-~~~W~l~~D~~l~~GGC~iet~~s~vDatletR~~~v~~~l~~~ 245 (252)
T PRK05687 183 RVNPDDLELVEALLGAELS-EHGWRLLADPSLHRGGCRISAAEGDVDATLETRWQEVCRSLGPQ 245 (252)
T ss_pred EECHHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCEEEEECCCEEECCHHHHHHHHHHHHCCC
T ss_conf 9888899999998767776-35836863787588886998789536422999999999986666
No 35
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=75.38 E-value=7 Score=19.78 Aligned_cols=106 Identities=13% Similarity=0.162 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 45657889986204664346899999853320110142499999998887655533101056899899999999999974
Q gi|254780618|r 61 KDRRSVIDDLVKDAHFCAITANFLRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIV 140 (186)
Q Consensus 61 ~~K~~ii~~i~~~~~~~~~~~~fl~~L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~~ 140 (186)
+.+..++++++. .+..-|..+....+...+ ..+..-......-....|++. +-+.+- +.+.+..
T Consensus 77 e~~ee~l~~~~~------~~~e~L~~i~~~~~~~~l----~~ll~~~~~~~~~~~~iV~~~-e~d~~~---v~~~~~~-- 140 (194)
T COG1390 77 EAKEEILESVFE------AVEEKLRNIASDPEYESL----QELLIEALEKLLGGELVVYLN-EKDKAL---VEQILRE-- 140 (194)
T ss_pred HHHHHHHHHHHH------HHHHHHHCCCCCCCHHHH----HHHHHHHHHHCCCCCEEEEEC-CCCHHH---HHHHHHH--
T ss_conf 999999999999------999999727677316789----999999998627998088867-443888---9999752--
Q ss_pred CCEEEEEEEECCCHHCEEEEEE--CCEEEEHHHHHHHHHHHHHHH
Q ss_conf 8958999999741402389997--997850279999999999852
Q gi|254780618|r 141 GKTVILDVMEDSALMGGFIVEI--GAHQIDASLRTQLLKLGCILK 183 (186)
Q Consensus 141 ~~~i~l~~~vD~slIGG~~i~v--g~~~iD~Si~~kL~~l~~~l~ 183 (186)
..+........+.+||+++.. |.-.+|.|+.+.|..+...+.
T Consensus 141 -~~~~~~~~~~~d~~GGvvv~~~dG~i~~dnt~~sil~~~~e~~~ 184 (194)
T COG1390 141 -LKIGVELGEGIDIIGGVVVESRDGKIRLDNTFESILERVLEELL 184 (194)
T ss_pred -CCCCHHCCCCCCCCCEEEEEECCCCEEECCCHHHHHHHHHHHHH
T ss_conf -14421105667874127998579865663739999999999999
No 36
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004558 This family represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. HemN catalyses the anaerobic transformation of coproporhyrinogen-III into protoporphyrinogen-IX during porphyrin biosynthesis. Several species, including Escherichia coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity, IPR004559 from INTERPRO. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterised protein.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm.
Probab=74.59 E-value=5 Score=20.74 Aligned_cols=91 Identities=15% Similarity=0.194 Sum_probs=60.6
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHH-HHHHHEE----ECCCCCHHHHHHHHHHHHHHH---CCEEEEEEEECCCHHC---
Q ss_conf 5332011014249999999888765-5533101----056899899999999999974---8958999999741402---
Q gi|254780618|r 88 VANGRLSVLPAIIKSFRAVCMYYRN-EVMAFVR----AFSGLSLLQQNKLGECLEKIV---GKTVILDVMEDSALMG--- 156 (186)
Q Consensus 88 ~~~~r~~~l~~I~~~f~~~~~~~~~-~~~~~V~----sa~~ls~~~~~~i~~~l~~~~---~~~i~l~~~vD~slIG--- 156 (186)
-+.....+|..+..+..-......+ +.+..+. |+.-||.+|++.|.+.+...| +.++++..+|||-=+-
T Consensus 77 ~~~~~~~YL~~l~ke~~l~~~~~d~~R~V~QLHwGGGTP~YL~~~Q~~~l~~~i~~~F~nf~~daEiSiEidPR~~~~e~ 156 (462)
T TIGR00538 77 RKEKKDPYLEALKKEIALVAPLLDKDREVAQLHWGGGTPTYLSPEQIEELMKEIREAFPNFSEDAEISIEIDPRYLTKEV 156 (462)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH
T ss_conf 56510167999999999987775248946887627898333788999999999998732011584477652374137889
Q ss_pred -------EE-EEEECCEEEEHHHHHHHHHH
Q ss_conf -------38-99979978502799999999
Q gi|254780618|r 157 -------GF-IVEIGAHQIDASLRTQLLKL 178 (186)
Q Consensus 157 -------G~-~i~vg~~~iD~Si~~kL~~l 178 (186)
|| +|-.|=+=+|.-|...++|+
T Consensus 157 ~~~L~~~GFNRlS~GvQDfd~~VQ~avnR~ 186 (462)
T TIGR00538 157 IKALRDEGFNRLSFGVQDFDKEVQQAVNRI 186 (462)
T ss_pred HHHHHHCCCCEEECCEECCCHHHHHHHCCC
T ss_conf 999997589664235210785554443134
No 37
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family; InterPro: IPR014071 This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferable copper resistance) of an Enterococcus faecium (Streptococcus faecium) plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this entry are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI..
Probab=74.36 E-value=3.9 Score=21.45 Aligned_cols=80 Identities=20% Similarity=0.186 Sum_probs=56.1
Q ss_pred HHHHHHHHCCCCC--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 7889986204664--34689999985332011014249999999888765553310105689989999999999997489
Q gi|254780618|r 65 SVIDDLVKDAHFC--AITANFLRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIVGK 142 (186)
Q Consensus 65 ~ii~~i~~~~~~~--~~~~~fl~~L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~~~~ 142 (186)
-+|..+.++|-+. ..=..|++.-.=.-+.+.=...-+-|...+..+.|...+.++.=.+||.+.+++|++.|+.|-..
T Consensus 41 TLl~RLV~KG~L~te~eGrkfiY~a~v~e~e~~~~~~~~lf~~~C~~k~g~~i~~Liee~~ls~~Di~~L~~~L~~K~~~ 120 (130)
T TIGR02698 41 TLLGRLVDKGLLTTEKEGRKFIYTALVSEKEAVENAAEDLFSRICSKKVGNVIADLIEESTLSQDDIEKLEKLLSEKKST 120 (130)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99976544132311005772013567558788999999999876021389999998840667876899999999876417
Q ss_pred EE
Q ss_conf 58
Q gi|254780618|r 143 TV 144 (186)
Q Consensus 143 ~i 144 (186)
.|
T Consensus 121 Av 122 (130)
T TIGR02698 121 AV 122 (130)
T ss_pred CC
T ss_conf 87
No 38
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=67.41 E-value=10 Score=18.62 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHH----HHHCCEEEEEEEECCCHHCEEEEEE--CCEEEEHHHHH
Q ss_conf 9899999999999----9748958999999741402389997--99785027999
Q gi|254780618|r 125 SLLQQNKLGECLE----KIVGKTVILDVMEDSALMGGFIVEI--GAHQIDASLRT 173 (186)
Q Consensus 125 s~~~~~~i~~~l~----~~~~~~i~l~~~vD~slIGG~~i~v--g~~~iD~Si~~ 173 (186)
++.....|.+.+. ..+..-|+ ...++.+-+||+|+. |+..||.|--.
T Consensus 126 ~~~d~~~L~~~~~~~~k~~L~~Gv~--i~~~~g~~~Gf~i~~~Dg~~~~dfs~ea 178 (198)
T PRK01558 126 NESDLSNLESILRAALGNKLAAGIE--LKPFKGISKGFKIQQKDGGLYYDFSAEA 178 (198)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCE--EEECCCCCCCEEEEECCCCEEEECCHHH
T ss_conf 7977999999999999999846955--6214786676069865997688457999
No 39
>PRK05660 coproporphyrinogen III oxidase; Provisional
Probab=51.39 E-value=20 Score=16.83 Aligned_cols=84 Identities=11% Similarity=-0.126 Sum_probs=36.0
Q ss_pred HCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHH
Q ss_conf 1845220456578899862046643468999-998533201101424999999988876555331010568998999999
Q gi|254780618|r 54 HNPLFSMKDRRSVIDDLVKDAHFCAITANFL-RILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKL 132 (186)
Q Consensus 54 ~sp~i~~~~K~~ii~~i~~~~~~~~~~~~fl-~~L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i 132 (186)
.||.--..+|...+.+.. -..+|==++.|= .+|-.-+|..-..++.+.+.......-..+.+.++..-| ....+.+
T Consensus 100 ~nP~~~~~~~l~~l~~~G-vnRiSiGVQsf~~~~l~~lgR~h~~~~~~~ai~~~r~~gf~~iniDLiyGlP--~Qt~~~~ 176 (378)
T PRK05660 100 ANPGTVEADRFVGYQRAG-VNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGAGLRSFNLDLMHGLP--DQSLEEA 176 (378)
T ss_pred CCCCCCCHHHHHHHHHCC-CCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC--CCCHHHH
T ss_conf 570533088999999809-8759996143789999982799999999999999997699606542326899--9889999
Q ss_pred HHHHHHHH
Q ss_conf 99999974
Q gi|254780618|r 133 GECLEKIV 140 (186)
Q Consensus 133 ~~~l~~~~ 140 (186)
...++...
T Consensus 177 ~~~l~~~~ 184 (378)
T PRK05660 177 LDDLRQAI 184 (378)
T ss_pred HHHHHHHH
T ss_conf 99999986
No 40
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=51.01 E-value=20 Score=16.79 Aligned_cols=81 Identities=11% Similarity=0.104 Sum_probs=38.9
Q ss_pred HCCCCCHHHHHHHHHHHHHCCCCC----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHH
Q ss_conf 184522045657889986204664----3468999998533201101424999999988876555331010568998999
Q gi|254780618|r 54 HNPLFSMKDRRSVIDDLVKDAHFC----AITANFLRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQ 129 (186)
Q Consensus 54 ~sp~i~~~~K~~ii~~i~~~~~~~----~~~~~fl~~L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~ 129 (186)
.||.--..+|...+.+.. -..+| ..-...|+.| +|..-..++.+.+.......-....+.++..-|-. ..
T Consensus 96 aNP~~~~~ekL~~lk~~G-VNRiSlGVQSf~d~~Lk~L---GR~H~~~~~~~ai~~~r~~Gf~nIsiDLIyGlPgQ--T~ 169 (353)
T PRK05904 96 CNPELITQSQINLLKKNK-VNRISLGVQSMNNNILKQL---NRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPIL--KL 169 (353)
T ss_pred ECCCCCCHHHHHHHHHCC-CCEEEEECCCCCHHHHHHH---CCCCCHHHHHHHHHHHHHHCCCEEEECEEECCCCC--CH
T ss_conf 651448789999999649-8768887455998999983---89998999999999999819973600426359999--99
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999974
Q gi|254780618|r 130 NKLGECLEKIV 140 (186)
Q Consensus 130 ~~i~~~l~~~~ 140 (186)
+..++.++...
T Consensus 170 ~~~~~~L~~~l 180 (353)
T PRK05904 170 KDLDEVFNFIL 180 (353)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 41
>pfam07560 DUF1539 Domain of Unknown Function (DUF1539).
Probab=47.44 E-value=20 Score=16.79 Aligned_cols=32 Identities=13% Similarity=0.323 Sum_probs=25.2
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCH
Q ss_conf 98999851845220456578899862046643
Q gi|254780618|r 47 ADLRFFIHNPLFSMKDRRSVIDDLVKDAHFCA 78 (186)
Q Consensus 47 ~~l~~~l~sp~i~~~~K~~ii~~i~~~~~~~~ 78 (186)
..+-.+|.+|.++.+.|.++++.+..-..-++
T Consensus 70 ~~L~~~L~dp~I~~erK~~~L~~IaSY~d~C~ 101 (126)
T pfam07560 70 HKLILALKDPTIPTERKLELLNYIASYADRCP 101 (126)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 99999846999981899999999998723799
No 42
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=40.10 E-value=29 Score=15.70 Aligned_cols=84 Identities=17% Similarity=0.003 Sum_probs=33.9
Q ss_pred HCCCCCHHHHHHHHHHHHHCCCCCHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHH
Q ss_conf 184522045657889986204664346899-9998533201101424999999988876555331010568998999999
Q gi|254780618|r 54 HNPLFSMKDRRSVIDDLVKDAHFCAITANF-LRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKL 132 (186)
Q Consensus 54 ~sp~i~~~~K~~ii~~i~~~~~~~~~~~~f-l~~L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i 132 (186)
.||.--..+|...+.+.. -..+|-=++.| =.+|-.-+|..-..++.+.+.......-..+.+.++..-| ....+.+
T Consensus 92 ~nP~~~~~~~l~~l~~~G-vNRiSiGVQSf~d~~Lk~lgR~H~~~~~~~ai~~~r~~gf~niniDLIyGlP--~Qt~e~~ 168 (351)
T PRK08446 92 ANPNSATLAWLKGMKNLG-VNRISFGVQSFHEDKLKFLGRIHSKNQIIKAIENAKKAGFKNISIDLIYNTK--LDNKKLL 168 (351)
T ss_pred ECCCCCCHHHHHHHHHCC-CCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEECHHHHCCCC--CCCHHHH
T ss_conf 676868999999998649-8769997313768999981899889999999999998499634225531799--9999999
Q ss_pred HHHHHHHH
Q ss_conf 99999974
Q gi|254780618|r 133 GECLEKIV 140 (186)
Q Consensus 133 ~~~l~~~~ 140 (186)
.+.++...
T Consensus 169 ~~~l~~~~ 176 (351)
T PRK08446 169 KEELKLAK 176 (351)
T ss_pred HHHHHHHH
T ss_conf 99999997
No 43
>TIGR02349 DnaJ_bact chaperone protein DnaJ; InterPro: IPR012724 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold . DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation . Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. DnaJ comprises a 70-residue N-terminal domain (the J-domain); a 30-residue glycine-rich region (the G-domain); a central domain containing 4 repeats of a CxxCxGxG motif (the CRR-domain); and a 120-170 residue C-terminal region. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins , either together or separately. This entry mostly consists of bacterial forms of DnaJ. The three components of the DnaK-DnaJ-GrpE system are typically encoded by consecutive genes. DnaJ homologues occur in many genomes, typically not encoded near DnaK and GrpE-like genes. Most such proteins are not included in this family, though some chloroplast homologues are included; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0009408 response to heat.
Probab=33.04 E-value=27 Score=15.94 Aligned_cols=25 Identities=32% Similarity=0.134 Sum_probs=20.6
Q ss_pred HHHHHEEECCCCCHHHHHHHHHHHH
Q ss_conf 5533101056899899999999999
Q gi|254780618|r 113 EVMAFVRAFSGLSLLQQNKLGECLE 137 (186)
Q Consensus 113 ~~~~~V~sa~~ls~~~~~~i~~~l~ 137 (186)
.+.|.|.++..||++|++.|++..+
T Consensus 360 ~v~V~v~~P~~Ls~~q~~lLe~l~~ 384 (386)
T TIGR02349 360 LVTVKVETPKNLSKEQKELLEELAE 384 (386)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999998589878889999999973
No 44
>smart00538 POP4 A domain found in a protein subunit of human RNase MRP and RNase P ribonucleoprotein complexes and archaeal proteins.
Probab=31.27 E-value=40 Score=14.79 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=20.3
Q ss_pred HHHHH-HCCEEEEEEEECCCHHC--EEEEE
Q ss_conf 99997-48958999999741402--38999
Q gi|254780618|r 135 CLEKI-VGKTVILDVMEDSALMG--GFIVE 161 (186)
Q Consensus 135 ~l~~~-~~~~i~l~~~vD~slIG--G~~i~ 161 (186)
.+..- .|..+.+...-||+++| |++|.
T Consensus 6 l~~~el~G~~i~Vv~S~~pslvGi~GiVv~ 35 (92)
T smart00538 6 LLRHELIGLKVRVVASKNPSLVGIEGIVVD 35 (92)
T ss_pred HHHHHCCCCEEEEEECCCCCCCCCEEEEEE
T ss_conf 333040498889998489873695769998
No 45
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR; InterPro: IPR010242 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry describes IscR, an iron-sulphur binding transcription factor of the ISC iron-sulphur cluster assembly system.; GO: 0003690 double-stranded DNA binding, 0003700 transcription factor activity, 0006355 regulation of transcription DNA-dependent.
Probab=31.25 E-value=35 Score=15.18 Aligned_cols=17 Identities=18% Similarity=0.497 Sum_probs=14.5
Q ss_pred HHHHH-HHHHHHHHHCCC
Q ss_conf 57999-999999986399
Q gi|254780618|r 12 PGRYS-HSLFGVSNEEGV 28 (186)
Q Consensus 12 a~~YA-~AL~~~a~e~~~ 28 (186)
=+||| .|++|+|..+..
T Consensus 6 KGRYAVTAmLDlA~~~~~ 23 (140)
T TIGR02010 6 KGRYAVTAMLDLALNAET 23 (140)
T ss_pred CHHHHHHHHHHHHHHCCC
T ss_conf 236899999999973058
No 46
>PRK07738 flagellar protein FlaG; Provisional
Probab=30.24 E-value=41 Score=14.67 Aligned_cols=73 Identities=14% Similarity=0.156 Sum_probs=47.8
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHE--EECCCCCHHHHHHHHHHHHHHHC-CEEEEEEEECCCHHCEEEEEECC
Q ss_conf 2011014249999999888765553310--10568998999999999999748-95899999974140238999799
Q gi|254780618|r 91 GRLSVLPAIIKSFRAVCMYYRNEVMAFV--RAFSGLSLLQQNKLGECLEKIVG-KTVILDVMEDSALMGGFIVEIGA 164 (186)
Q Consensus 91 ~r~~~l~~I~~~f~~~~~~~~~~~~~~V--~sa~~ls~~~~~~i~~~l~~~~~-~~i~l~~~vD~slIGG~~i~vg~ 164 (186)
+|+.....+...|........+...-.= .-..+++.++++..-+.+.+.+. ....+.+.+|+++ |-++|++=|
T Consensus 4 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~evskeeLeeaV~kLN~~l~~~~~~l~F~~~e~~-~~~~VkVvD 79 (113)
T PRK07738 4 NRLSSLEPIVDAYETQTSNKAYESVERPQQHETTEVSKEDLEETVDGMNELLEPSQTHLKFELHEKL-NEYYVKVVD 79 (113)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCC-CCEEEEEEE
T ss_conf 1014333067888889877654100156663026669999999999999999722775389982566-848999997
No 47
>LOAD_p29_RnaseP consensus
Probab=29.70 E-value=42 Score=14.61 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=19.7
Q ss_pred HHHHHH-CCEEEEEEEECCCHHC--EEEEE
Q ss_conf 999974-8958999999741402--38999
Q gi|254780618|r 135 CLEKIV-GKTVILDVMEDSALMG--GFIVE 161 (186)
Q Consensus 135 ~l~~~~-~~~i~l~~~vD~slIG--G~~i~ 161 (186)
.+..-+ |..+++...-||+++| |++|.
T Consensus 6 l~~~el~G~~i~V~~S~npslvGi~GiVv~ 35 (92)
T LOAD_p29_Rnase 6 LIRHELIGLLVRVVASKNPSRVGIEGIVVD 35 (92)
T ss_pred HHHHHCCCCEEEEEECCCCCCCCCEEEEEE
T ss_conf 123030498789998599983595889994
No 48
>PHA01351 putative minor structural protein
Probab=29.29 E-value=43 Score=14.57 Aligned_cols=28 Identities=11% Similarity=0.087 Sum_probs=10.9
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 8899862046643468999998533201
Q gi|254780618|r 66 VIDDLVKDAHFCAITANFLRILVANGRL 93 (186)
Q Consensus 66 ii~~i~~~~~~~~~~~~fl~~L~~~~r~ 93 (186)
.+.++|.+.+++..++|.-.--++|+|+
T Consensus 988 ~lQKVFaeyqvP~dLQniY~eYarNrRl 1015 (1070)
T PHA01351 988 LLQKVFAEFQIPQELQNTYFEYARNRRV 1015 (1070)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9999998506968899999999860089
No 49
>pfam06819 Arc_PepC Archaeal Peptidase A24 C-terminal Domain. This region is of unknown function but is found in some archaeal pfam01478. It is predicted to be of mixed alpha/beta secondary structure by JPred.
Probab=28.76 E-value=44 Score=14.51 Aligned_cols=24 Identities=21% Similarity=0.037 Sum_probs=19.4
Q ss_pred HHHHEEECCCCCHHHHHHHHHHHH
Q ss_conf 533101056899899999999999
Q gi|254780618|r 114 VMAFVRAFSGLSLLQQNKLGECLE 137 (186)
Q Consensus 114 ~~~~V~sa~~ls~~~~~~i~~~l~ 137 (186)
..+-.+++..||++|+++|++..+
T Consensus 78 ~~i~~~~~EGLs~E~IE~LkkLv~ 101 (111)
T pfam06819 78 EEVAGTSGEGLTEEQIEKLKKLVS 101 (111)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 757515645677989999999997
No 50
>TIGR01363 strep_his_triad streptococcal histidine triad protein; InterPro: IPR006270 The sequences represented in this group are identified by a domain which consists of the N-terminal half of a family of Streptococcal proteins that contain a signal peptide and then up to five repeats of a region that includes a His-X-X-His-X-His (histidine triad) motif. Additional copies of the repeats are found in more poorly conserved regions. Members of this family from Streptococcus pneumoniae are suggested to cleave human C3, and the member PhpA has been shown in vaccine studies to be a protective antigen in mice . .
Probab=28.00 E-value=38 Score=14.96 Aligned_cols=18 Identities=22% Similarity=0.695 Sum_probs=15.0
Q ss_pred CHHCEEEEEECCEEE----EHH
Q ss_conf 140238999799785----027
Q gi|254780618|r 153 ALMGGFIVEIGAHQI----DAS 170 (186)
Q Consensus 153 slIGG~~i~vg~~~i----D~S 170 (186)
.|.||++|+|+++.| |+|
T Consensus 124 Ei~~GYVIKV~G~YYVYLK~aa 145 (376)
T TIGR01363 124 EIKGGYVIKVNGKYYVYLKDAA 145 (376)
T ss_pred EECCCEEEEECCEEEEEECCCC
T ss_conf 2038668988581889617212
No 51
>PRK08949 consensus
Probab=26.84 E-value=47 Score=14.29 Aligned_cols=83 Identities=11% Similarity=-0.104 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHH
Q ss_conf 845220456578899862046643468999-9985332011014249999999888765553310105689989999999
Q gi|254780618|r 55 NPLFSMKDRRSVIDDLVKDAHFCAITANFL-RILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLG 133 (186)
Q Consensus 55 sp~i~~~~K~~ii~~i~~~~~~~~~~~~fl-~~L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~ 133 (186)
||.-=..+|...+.+.. -..+|-=++.|= .+|-.-+|..-..++.+.+.......-..+.+.+...-| ....+.+.
T Consensus 101 nP~~~~~~~l~~l~~~G-vNRiSlGvQsf~~~~L~~lgR~h~~~~~~~a~~~~~~~gf~~iniDLiyglP--~Qt~~~~~ 177 (378)
T PRK08949 101 NPGTVEADRFVGYQRAG-VNRISIGVQSFSEEKLKRLGRIHGPQEAKRAAKLASGLGLRSFNLDLMHGLP--DQSLEEAL 177 (378)
T ss_pred CCCCCCHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCC--CCCHHHHH
T ss_conf 82523188999999719-8669995034898999983799999999999999986599625023236899--98999999
Q ss_pred HHHHHHH
Q ss_conf 9999974
Q gi|254780618|r 134 ECLEKIV 140 (186)
Q Consensus 134 ~~l~~~~ 140 (186)
..|....
T Consensus 178 ~~l~~~~ 184 (378)
T PRK08949 178 DDLRQAI 184 (378)
T ss_pred HHHHHHH
T ss_conf 9999996
No 52
>PRK11593 folB bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=26.76 E-value=48 Score=14.28 Aligned_cols=48 Identities=10% Similarity=0.027 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCC
Q ss_conf 346899999853320110142499999998887655533101056899
Q gi|254780618|r 78 AITANFLRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLS 125 (186)
Q Consensus 78 ~~~~~fl~~L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls 125 (186)
..+.+.+.-+++.+++.+++..++...+.+....+...++|+..+|--
T Consensus 54 ~~v~~~i~~~~~~~~~~LiEtLAe~ia~~ll~~f~v~~v~v~v~KP~a 101 (119)
T PRK11593 54 ADIAETVISHVEGARFALVERVAEEVAELLLARFNSPWVRIKLSKPGA 101 (119)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf 999999999996799141999999999999965897679999989988
No 53
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=26.64 E-value=48 Score=14.27 Aligned_cols=84 Identities=21% Similarity=0.176 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHEE----ECCCCCHHHHHHHHHHHHHHHC---CEEEEEEEECCCHHC----------E
Q ss_conf 0142499999998887655533101----0568998999999999999748---958999999741402----------3
Q gi|254780618|r 95 VLPAIIKSFRAVCMYYRNEVMAFVR----AFSGLSLLQQNKLGECLEKIVG---KTVILDVMEDSALMG----------G 157 (186)
Q Consensus 95 ~l~~I~~~f~~~~~~~~~~~~~~V~----sa~~ls~~~~~~i~~~l~~~~~---~~i~l~~~vD~slIG----------G 157 (186)
++..++.+.........+....+|. |++-|+.+++.+|-+.+.+.++ ..+++..+.||.=+. |
T Consensus 78 Y~~aL~~Ei~~~~~~~~~~~~~tiy~GGGTPS~L~~~~l~~ll~~l~~~f~~~~~~~EiTiE~nP~~~~~~~l~~l~~~G 157 (436)
T PRK08208 78 YLDALIRQARQVALALGGVHFASFAVGGGTPTLLNIAQLEKLFFSVFDVLGVDLWNIPKSVETSPTTTTAEKLALLNAFG 157 (436)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 99999999999876638983568996794322199999999999999858998467159998663636099999999739
Q ss_pred E-EEEECCEEEEHHHHHHHHHH
Q ss_conf 8-99979978502799999999
Q gi|254780618|r 158 F-IVEIGAHQIDASLRTQLLKL 178 (186)
Q Consensus 158 ~-~i~vg~~~iD~Si~~kL~~l 178 (186)
+ +|.+|=+-+|-.+...|.+.
T Consensus 158 vNRiSlGVQsf~~~~L~~lgR~ 179 (436)
T PRK08208 158 VNRVSIGVQSFHDSELHALHRR 179 (436)
T ss_pred CCEEEEECCCCCHHHHHHHCCC
T ss_conf 8727874144898999984688
No 54
>TIGR02871 spore_ylbJ sporulation integral membrane protein YlbJ; InterPro: IPR014226 Members of this entry include YlbJ, from Bacillus subtilis. They are found exclusively in the Firmicutes (low-GC Gram-positive bacteria) and are known from studies in B. subtilis to be part of the sigma-E regulon . Mutation leads to a sporulation defect, confirming that members of this entry are involved in sporulation. The protein appears to be universal among endospore-forming bacteria, and in Symbiobacterium thermophilum IAM 14863, there are two ORFs encoding YlbJ that are distant from each other..
Probab=26.13 E-value=34 Score=15.26 Aligned_cols=120 Identities=17% Similarity=0.274 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC-HHH------HHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 7999999999986399899999999999995069-989------998518452204565788998620466434689999
Q gi|254780618|r 13 GRYSHSLFGVSNEEGVLDIVSDDISRLEALLMES-ADL------RFFIHNPLFSMKDRRSVIDDLVKDAHFCAITANFLR 85 (186)
Q Consensus 13 ~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~-~~l------~~~l~sp~i~~~~K~~ii~~i~~~~~~~~~~~~fl~ 85 (186)
.+|+-=||+ ++.... ++.+++..+..+. |=| -.+|.|| +...+--+-. + ++..+..++.
T Consensus 94 AK~~adLye----~~lI~~--~e~eRL~nfann~gPLFi~GaVg~sml~Np------~lGy~Llis~-Y-Ls~I~~GLI~ 159 (384)
T TIGR02871 94 AKYSADLYE----EKLITF--EEAERLLNFANNSGPLFIIGAVGTSMLNNP------TLGYILLISH-Y-LSCITVGLIL 159 (384)
T ss_pred HHHHHHHHH----CCCCCH--HHHHHHHHHHCCCCHHHHHHHHHHHHHCCH------HHHHHHHHHH-H-HHHHHHHHHH
T ss_conf 887665565----477456--899999998727883789999999740575------6899999985-8-9999999860
Q ss_pred HH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCHHCEEEE
Q ss_conf 98-5332011014249999999888765553310105689989999999999997489589999997414023899
Q gi|254780618|r 86 IL-VANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIVGKTVILDVMEDSALMGGFIV 160 (186)
Q Consensus 86 ~L-~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~~~~~i~l~~~vD~slIGG~~i 160 (186)
-- .+++|-+.=..-...| ..-.+.++-..+++.+.+|+.+--++.+++.++..+ ++|||+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~f-S~~~AL~~l~~~~~~s~~~~G~~L~~aie~av~til-------------~vgGFvI 221 (384)
T TIGR02871 160 RFKKRKKRKKLSKKKKTEF-SLKDALTGLHSIRLKSKKNIGKLLKEAIENAVKTIL-------------LVGGFVI 221 (384)
T ss_pred CCCCHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-------------HHHHHHH
T ss_conf 7774146665564168766-578898878323540678876899999999999998-------------9966999
No 55
>COG4086 Predicted secreted protein [Function unknown]
Probab=25.82 E-value=26 Score=15.97 Aligned_cols=61 Identities=13% Similarity=0.022 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCHHCEEEEEECCEEEEHH-HHHHHHHHHHHHHHC
Q ss_conf 6899899999999999974895899999974140238999799785027-999999999985224
Q gi|254780618|r 122 SGLSLLQQNKLGECLEKIVGKTVILDVMEDSALMGGFIVEIGAHQIDAS-LRTQLLKLGCILKEV 185 (186)
Q Consensus 122 ~~ls~~~~~~i~~~l~~~~~~~i~l~~~vD~slIGG~~i~vg~~~iD~S-i~~kL~~l~~~l~~v 185 (186)
.+.+++.+.++..-+.+.||-+ + +..+-..|--+..+..+.-+|++ ++++|++.+..++.+
T Consensus 208 ~~~~~~dirkvv~dv~~~ynvn--l-td~qvn~i~~~~~~~~~~n~d~~kv~~~L~qa~d~l~~~ 269 (299)
T COG4086 208 KVDDPADIRKVVDDVANNYNVN--L-TDTQVNQIVNLFLAMSNLNIDWTKVQGQLKQAKDSLKWF 269 (299)
T ss_pred CCCCHHHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 8999899999999999871889--9-788999999999984145752777633799999999999
No 56
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=25.54 E-value=50 Score=14.14 Aligned_cols=83 Identities=16% Similarity=0.033 Sum_probs=28.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHH
Q ss_conf 8452204565788998620466434689999-985332011014249999999888765553310105689989999999
Q gi|254780618|r 55 NPLFSMKDRRSVIDDLVKDAHFCAITANFLR-ILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLG 133 (186)
Q Consensus 55 sp~i~~~~K~~ii~~i~~~~~~~~~~~~fl~-~L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~ 133 (186)
||.-=..+|...+.+.. -..+|-=++.|=. +|-.-+|..-..++.+.+.......-..+.+.++..-| ....+.+.
T Consensus 94 nP~~~~~~~l~~l~~~G-vNRiSlGvQsf~~~~l~~lgR~h~~~~~~~~i~~~r~~gf~~iniDLIyGlP--~Qt~~~~~ 170 (377)
T PRK08599 94 NPGDLTKEKLQVLKDYG-VNRISLGVQTFNDELLKKIGRTHNEEDVYESIANAKKAGFKNISIDLIYALP--GQTIEDVK 170 (377)
T ss_pred CCCCCCHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCC--CCCHHHHH
T ss_conf 51516399999999709-9879996535987999986899989999999999997599741156542788--89899999
Q ss_pred HHHHHHH
Q ss_conf 9999974
Q gi|254780618|r 134 ECLEKIV 140 (186)
Q Consensus 134 ~~l~~~~ 140 (186)
+.+....
T Consensus 171 ~~l~~~~ 177 (377)
T PRK08599 171 ESLDKAL 177 (377)
T ss_pred HHHHHHH
T ss_conf 9999997
No 57
>PRK03879 ribonuclease P protein component 1; Validated
Probab=23.89 E-value=54 Score=13.94 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=18.5
Q ss_pred HHCCEEEEEEEECCCHHC--EEEEE
Q ss_conf 748958999999741402--38999
Q gi|254780618|r 139 IVGKTVILDVMEDSALMG--GFIVE 161 (186)
Q Consensus 139 ~~~~~i~l~~~vD~slIG--G~~i~ 161 (186)
..|..+++...-||+++| |.+|.
T Consensus 12 liGl~v~Vv~S~npslvGi~G~Vid 36 (96)
T PRK03879 12 LIGLEVEVVNSTNPSLVGIKGRVID 36 (96)
T ss_pred HCCCEEEEEECCCCCCCCCEEEEEE
T ss_conf 0397689997699763686589997
No 58
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=23.84 E-value=54 Score=13.93 Aligned_cols=80 Identities=9% Similarity=-0.025 Sum_probs=31.3
Q ss_pred HCCCCCHHHHHHHHHHHHHCCCCC----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHH
Q ss_conf 184522045657889986204664----3468999998533201101424999999988876555331010568998999
Q gi|254780618|r 54 HNPLFSMKDRRSVIDDLVKDAHFC----AITANFLRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQ 129 (186)
Q Consensus 54 ~sp~i~~~~K~~ii~~i~~~~~~~----~~~~~fl~~L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~ 129 (186)
.||.--..+|...+.+.. -..+| ..-...++.+ +|..-..++.+.+. ...+.-..+.+.++..-| ....
T Consensus 114 ~nP~~~~~~~l~~l~~~G-vnRiSlGVQsf~~~~l~~l---gR~h~~~~~~~~i~-~~~~~f~~iniDLiyGlP--~Qt~ 186 (393)
T PRK08898 114 ANPGTFEAEKFAQFRASG-VNRLSIGIQSFNDAHLKAL---GRIHDGAEARAAIE-IAAKHFDNFNLDLMYALP--NQTL 186 (393)
T ss_pred ECCCCCCHHHHHHHHHCC-CCEEEEEEECCCHHHHHHH---CCCCCHHHHHHHHH-HHHHHCCCCCCHHHHCCC--CCCH
T ss_conf 362506099999998549-8648995202899999981---89999999999999-999737466728983598--8989
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999974
Q gi|254780618|r 130 NKLGECLEKIV 140 (186)
Q Consensus 130 ~~i~~~l~~~~ 140 (186)
+...+.+.+..
T Consensus 187 ~~~~~~l~~~~ 197 (393)
T PRK08898 187 DECRADVETAL 197 (393)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999986
No 59
>pfam01868 UPF0086 Domain of unknown function UPF0086. This family consists of several archaeal and eukaryotic proteins. The archaeal proteins are found to be expressed within ribosomal operons and several of the sequences are described as ribonuclease P protein subunit p29 proteins.
Probab=22.93 E-value=56 Score=13.82 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=19.5
Q ss_pred HHCCEEEEEEEECCCHHC--EEEEE
Q ss_conf 748958999999741402--38999
Q gi|254780618|r 139 IVGKTVILDVMEDSALMG--GFIVE 161 (186)
Q Consensus 139 ~~~~~i~l~~~vD~slIG--G~~i~ 161 (186)
..|..+.+...-||+++| |++|.
T Consensus 12 ~~G~~i~Vv~S~~pslvGi~GiVv~ 36 (89)
T pfam01868 12 LIGLEVEVVRSTNPSLVGIKGIVVD 36 (89)
T ss_pred HCCCEEEEEECCCCCCCCCEEEEEE
T ss_conf 2498689998699864695899986
No 60
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=22.57 E-value=57 Score=13.77 Aligned_cols=35 Identities=11% Similarity=0.015 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHHHHCCEEEEEEEECCCHHCEEE
Q ss_conf 98999999999999748958999999741402389
Q gi|254780618|r 125 SLLQQNKLGECLEKIVGKTVILDVMEDSALMGGFI 159 (186)
Q Consensus 125 s~~~~~~i~~~l~~~~~~~i~l~~~vD~slIGG~~ 159 (186)
..+.++.+.+.++..-.........+||+++-|+=
T Consensus 233 ~~~~l~~l~~l~~~l~~~~~~~~i~iD~~lvRGld 267 (388)
T PRK12292 233 AKRALDELKALAEALEKAGYGIYLQLDLGLLRHYD 267 (388)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEECCHHCCCCC
T ss_conf 68999999999999984499964720400035766
No 61
>pfam06635 NolV Nodulation protein NolV. This family consists of several nodulation protein NolV sequences from different Rhizobium species. The function of this family is unclear.
Probab=22.20 E-value=58 Score=13.72 Aligned_cols=101 Identities=15% Similarity=0.101 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHH--HCCEEEEEEEECCC
Q ss_conf 6434689999985332011014249999999888765553310105689989999999999997--48958999999741
Q gi|254780618|r 76 FCAITANFLRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKI--VGKTVILDVMEDSA 153 (186)
Q Consensus 76 ~~~~~~~fl~~L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~--~~~~i~l~~~vD~s 153 (186)
+..++...+.-+..+ ++.-.-+...-..-.....+...+++.++ .++.+.|...++.. .+....+....||-
T Consensus 95 l~~lVle~vRkiLg~--fD~~Ell~r~vR~AL~~~~~~keV~LhV~----P~~ae~la~~~ad~~~~~~~~~l~I~~Dp~ 168 (207)
T pfam06635 95 LPQLVFEILRDLLGA--FDPGELLVMAVRHAIEQQYKGAEVCLHVS----PLKADLLAREFADWDGLDGRPKLRIEADPA 168 (207)
T ss_pred HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHCCCEEEEEEC----HHHHHHHHHHHHCCCCCCCCCEEEEEECCC
T ss_conf 999999999999860--49488999999999998733872899988----888999999973310447886068721876
Q ss_pred HH-CEEEEEECCEEEEHHHHHHHHHHHHHH
Q ss_conf 40-238999799785027999999999985
Q gi|254780618|r 154 LM-GGFIVEIGAHQIDASLRTQLLKLGCIL 182 (186)
Q Consensus 154 lI-GG~~i~vg~~~iD~Si~~kL~~l~~~l 182 (186)
|= ||.++...-=++|.|+..+|+.|+.-+
T Consensus 169 L~~~~cvLese~G~VDagLd~QL~aLr~~~ 198 (207)
T pfam06635 169 LSADQCVLWSEFGNVDLGLAAQLRALRLGF 198 (207)
T ss_pred CCCCCEEEECCCCEEEHHHHHHHHHHHHHC
T ss_conf 687762664354411003899999999852
No 62
>PTZ00298 mevalonate kinase; Provisional
Probab=21.99 E-value=58 Score=13.69 Aligned_cols=35 Identities=6% Similarity=-0.010 Sum_probs=25.5
Q ss_pred EECCCCCHHHHHHHHHHHHHHH-CCEEEEEEEECCC
Q ss_conf 1056899899999999999974-8958999999741
Q gi|254780618|r 119 RAFSGLSLLQQNKLGECLEKIV-GKTVILDVMEDSA 153 (186)
Q Consensus 119 ~sa~~ls~~~~~~i~~~l~~~~-~~~i~l~~~vD~s 153 (186)
..|=-.++++.++|.+.+...+ +.+..-.+.++||
T Consensus 289 vIaL~~~~~~a~~i~~al~~~~~~a~~~w~~~~~~~ 324 (328)
T PTZ00298 289 VVALAASEDQRDAIAKAVRARCPEAKFVWRYTVQPS 324 (328)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 999838666699999999974667730599995566
No 63
>KOG3035 consensus
Probab=21.79 E-value=59 Score=13.67 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHCC
Q ss_conf 44555799999999998639
Q gi|254780618|r 8 FSDVPGRYSHSLFGVSNEEG 27 (186)
Q Consensus 8 ~~~ia~~YA~AL~~~a~e~~ 27 (186)
.|++.+.||+|+..+|.|-+
T Consensus 146 tNe~~~~Ya~ac~~la~e~~ 165 (245)
T KOG3035 146 TNETVGTYAKACANLAQEIG 165 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHC
T ss_conf 45688999999999998819
No 64
>PRK11245 folX D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=21.19 E-value=61 Score=13.59 Aligned_cols=45 Identities=16% Similarity=0.023 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCC
Q ss_conf 468999998533201101424999999988876555331010568
Q gi|254780618|r 79 ITANFLRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSG 123 (186)
Q Consensus 79 ~~~~fl~~L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ 123 (186)
.+.+.+.-++.++++.+++..++...+.+........++|+..+|
T Consensus 59 ~i~~~i~~~v~~~~f~LlE~LA~~ia~~ll~~~~v~~v~v~v~KP 103 (120)
T PRK11245 59 TITKNIIQHVENNRFSLLEKLTQDVLDIAREHPWVTYAEVEIDKP 103 (120)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf 999999999964971239999999999996468986899999895
No 65
>KOG4437 consensus
Probab=20.24 E-value=63 Score=13.46 Aligned_cols=44 Identities=20% Similarity=0.396 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-----------HHCCCHHHHHHHH
Q ss_conf 2045657889986204664346899999853-----------3201101424999
Q gi|254780618|r 59 SMKDRRSVIDDLVKDAHFCAITANFLRILVA-----------NGRLSVLPAIIKS 102 (186)
Q Consensus 59 ~~~~K~~ii~~i~~~~~~~~~~~~fl~~L~~-----------~~r~~~l~~I~~~ 102 (186)
+...|..+|..++++.+++..+.-+|..|+. .+.+.++..|+..
T Consensus 172 ~~~~Kt~VI~~LL~kdNFDGDL~LWL~FLIRESD~R~YNl~DkKLI~lfsKiLn~ 226 (482)
T KOG4437 172 SYNTKTQVIQDLLRKDNFDGDLYLWLKFLIRESDKRVYNLNDKKLIKLFSKILNC 226 (482)
T ss_pred CCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 7443029999987146777428999999985046422465479999999999754
No 66
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=20.09 E-value=64 Score=13.44 Aligned_cols=59 Identities=14% Similarity=0.101 Sum_probs=41.9
Q ss_pred ECCCCCHHHHHHHHHHHHHHHC--CEEEEEEEECCCH----------HCEE-EEEECCEEEEHHHHHHHHHH
Q ss_conf 0568998999999999999748--9589999997414----------0238-99979978502799999999
Q gi|254780618|r 120 AFSGLSLLQQNKLGECLEKIVG--KTVILDVMEDSAL----------MGGF-IVEIGAHQIDASLRTQLLKL 178 (186)
Q Consensus 120 sa~~ls~~~~~~i~~~l~~~~~--~~i~l~~~vD~sl----------IGG~-~i~vg~~~iD~Si~~kL~~l 178 (186)
|++-|+.+++.+|-+.+.+.+. .+.++..+.||.- =+|| ++.+|=+-+|.-+...|.+.
T Consensus 119 TPs~L~~~~l~~l~~~i~~~f~l~~d~EiTiE~nP~~~~~~~l~~l~~~GvNRiSiGVQSf~~~vlk~lgR~ 190 (447)
T PRK09058 119 TPTALSADDLARLIEALREYLPLAPDCEITLEGRINGFDDEKIDAALDAGANRFSFGVQSFNTQVRRRAGRK 190 (447)
T ss_pred HHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCC
T ss_conf 347489999999999999768998884698833878799999999996499805772544888899864799
Done!