Query gi|254780618|ref|YP_003065031.1| F0F1 ATP synthase subunit delta [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 186
No_of_seqs 108 out of 2240
Neff 7.7
Searched_HMMs 13730
Date Wed Jun 1 10:12:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780618.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1abva_ a.70.1.1 (A:) N-termin 99.7 1E-17 7.4E-22 134.5 12.5 103 8-113 3-105 (105)
2 d2dm9a1 d.81.4.1 (A:81-198) V- 95.2 0.025 1.8E-06 32.9 6.2 59 124-183 49-109 (118)
3 d2hc5a1 d.352.1.1 (A:1-109) Hy 56.3 5.7 0.00042 17.3 5.5 69 91-162 4-73 (109)
4 d1v76a_ b.137.1.1 (A:) Hypothe 23.7 19 0.0014 13.9 3.0 23 140-162 14-38 (92)
5 d1ts9a_ b.137.1.1 (A:) Hypothe 21.5 21 0.0015 13.6 2.4 23 139-161 11-35 (98)
6 d2jdia1 a.69.1.1 (A:380-510) F 18.9 24 0.0017 13.3 6.4 82 58-139 36-125 (131)
7 d1oqka_ b.137.1.1 (A:) Hypothe 18.3 20 0.0014 13.8 1.1 22 140-161 5-28 (78)
8 d2p7ja2 d.110.6.2 (A:9-180) GG 16.3 27 0.002 12.9 5.4 45 16-60 8-52 (172)
9 d1w5fa2 d.79.2.1 (A:216-336) C 14.9 30 0.0021 12.6 5.1 51 112-162 55-108 (121)
10 d1b9la_ d.96.1.3 (A:) 7,8-dihy 14.0 31 0.0023 12.5 1.7 45 79-123 58-102 (119)
No 1
>d1abva_ a.70.1.1 (A:) N-terminal domain of the delta subunit of the F1F0-ATP synthase {Escherichia coli [TaxId: 562]}
Probab=99.75 E-value=1e-17 Score=134.54 Aligned_cols=103 Identities=16% Similarity=0.256 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 44555799999999998639989999999999999506998999851845220456578899862046643468999998
Q gi|254780618|r 8 FSDVPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFCAITANFLRIL 87 (186)
Q Consensus 8 ~~~ia~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~sp~i~~~~K~~ii~~i~~~~~~~~~~~~fl~~L 87 (186)
+++||+|||+|||++|.+++.++.|.+++..+..++ +++++..++.+|.++.++| ..+..+++ +++++.+.|||.+|
T Consensus 3 ~~TiArrYAkALf~lA~e~~~l~~~~~~l~~l~~l~-~~~~~~~~l~~p~~~~~kk-~~l~~~~~-~~~~~~~~nfl~lL 79 (105)
T d1abva_ 3 FITVARPYAKAAFDFAVEHQSVERWQDMLAFAAEVT-KNEQMAELLSGALAPETLA-ESFIAVCG-EQLDENGQNLIRVM 79 (105)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TSHHHHHHHTCSSCHHHHH-HHHHHHHC-SCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-CCHHHHHHHHCCCCCHHHH-HHHHHHHH-CCCCHHHHHHHHHH
T ss_conf 246589999999999986197668999999999988-6998999876112849999-99999973-02589999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 53320110142499999998887655
Q gi|254780618|r 88 VANGRLSVLPAIIKSFRAVCMYYRNE 113 (186)
Q Consensus 88 ~~~~r~~~l~~I~~~f~~~~~~~~~~ 113 (186)
++++|+.++++|+..|..++++++|+
T Consensus 80 ~~~~Rl~~l~~I~~~f~~L~~~~e~T 105 (105)
T d1abva_ 80 AENGRLNALPDVLEQFIHLRAVSEAT 105 (105)
T ss_dssp HHTTCGGGHHHHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 98864989999999999999977387
No 2
>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]}
Probab=95.21 E-value=0.025 Score=32.90 Aligned_cols=59 Identities=24% Similarity=0.328 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEEECCCHHCEEEEEE--CCEEEEHHHHHHHHHHHHHHH
Q ss_conf 998999999999999748958999999741402389997--997850279999999999852
Q gi|254780618|r 124 LSLLQQNKLGECLEKIVGKTVILDVMEDSALMGGFIVEI--GAHQIDASLRTQLLKLGCILK 183 (186)
Q Consensus 124 ls~~~~~~i~~~l~~~~~~~i~l~~~vD~slIGG~~i~v--g~~~iD~Si~~kL~~l~~~l~ 183 (186)
-+.+....+...+.+.++ .+.+...-+++++|||++.. |.-.+|.|+.++|+..+..+.
T Consensus 49 ~D~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~GGvil~s~dG~I~vdnTle~rl~~~~e~~~ 109 (118)
T d2dm9a1 49 KTLGLIASRIEEIKSELG-DVSIELGETVDTMGGVIVETEDGRIRIDNTFEARMERFEGEIR 109 (118)
T ss_dssp HHHHHHHHTHHHHHHHCT-TCEEEECCCCCCSSEEEEEETTSSCEEEEEHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHCC-CCEEEECCCCCCCCCEEEEECCCCEEEECCHHHHHHHHHHHHH
T ss_conf 249999999999998707-7526758987667878999669988997759999999999849
No 3
>d2hc5a1 d.352.1.1 (A:1-109) Hypothetical protein YvyC {Bacillus subtilis [TaxId: 1423]}
Probab=56.31 E-value=5.7 Score=17.34 Aligned_cols=69 Identities=13% Similarity=0.184 Sum_probs=48.0
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHC-CEEEEEEEECCCHHCEEEEEE
Q ss_conf 201101424999999988876555331010568998999999999999748-958999999741402389997
Q gi|254780618|r 91 GRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIVG-KTVILDVMEDSALMGGFIVEI 162 (186)
Q Consensus 91 ~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~~~-~~i~l~~~vD~slIGG~~i~v 162 (186)
+|+..+..+......-....+.. +.-..+.+++.++.+...+.+.+.+. ....|.+.+|+.. |.++|+|
T Consensus 4 ~~l~~~~pv~d~~~t~~~~~~~~--~~~~~~~e~s~~~l~~~v~~ln~~l~~~~~~L~F~~de~~-~~~vVkV 73 (109)
T d2hc5a1 4 ERLTTLQPVWDRYDTQIHNQKDN--DNEVPVHQVSYTNLAEMVGEMNKLLEPSQVHLKFELHDKL-NEYYVKV 73 (109)
T ss_dssp TTCCCCHHHHHHHHHHHHSCCCC--CSSCCCCCCCHHHHHHHHHHHHHHHTTSSCCEEEEEEEET-TEEEEEE
T ss_pred CCCCCCCCCHHHHHHHCCCCCCC--HHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCC-CCEEEEE
T ss_conf 30354474233443101342000--1203211049999999999999999833982499996688-9799999
No 4
>d1v76a_ b.137.1.1 (A:) Hypothetical protein PH1771 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=23.72 E-value=19 Score=13.91 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=19.0
Q ss_pred HCCEEEEEEEECCCHHC--EEEEEE
Q ss_conf 48958999999741402--389997
Q gi|254780618|r 140 VGKTVILDVMEDSALMG--GFIVEI 162 (186)
Q Consensus 140 ~~~~i~l~~~vD~slIG--G~~i~v 162 (186)
.|..+.+...-||+++| |++|.=
T Consensus 14 iG~~i~V~~S~~pslvGi~GiVv~E 38 (92)
T d1v76a_ 14 IGLRVRIVGSTHPAFVGIEGYVIDE 38 (92)
T ss_dssp TTCEEEEEEESSGGGTTCEEEEEEE
T ss_pred CCCEEEEEECCCCCCCCCEEEEEEE
T ss_conf 5988999985999824857899972
No 5
>d1ts9a_ b.137.1.1 (A:) Hypothetical protein AF1917 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=21.52 E-value=21 Score=13.63 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=18.8
Q ss_pred HHCCEEEEEEEECCCHHC--EEEEE
Q ss_conf 748958999999741402--38999
Q gi|254780618|r 139 IVGKTVILDVMEDSALMG--GFIVE 161 (186)
Q Consensus 139 ~~~~~i~l~~~vD~slIG--G~~i~ 161 (186)
..|..+.+...-||+++| |+++.
T Consensus 11 liG~~i~Vv~S~npslvGi~GiVV~ 35 (98)
T d1ts9a_ 11 WIGLMVEVVESPNHSEVGIKGEVVD 35 (98)
T ss_dssp CTTCEEEEEECSSGGGTTCEEEEEE
T ss_pred HCCCEEEEEECCCCCCCCCEEEEEE
T ss_conf 3298689998389872486889997
No 6
>d2jdia1 a.69.1.1 (A:380-510) F1 ATP synthase alpha subunit, domain 3 {Cow (Bos taurus) [TaxId: 9913]}
Probab=18.91 E-value=24 Score=13.27 Aligned_cols=82 Identities=15% Similarity=0.207 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHH---HHHHHHHHHCCCHH-----HHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHH
Q ss_conf 2204565788998620466434689---99998533201101-----424999999988876555331010568998999
Q gi|254780618|r 58 FSMKDRRSVIDDLVKDAHFCAITAN---FLRILVANGRLSVL-----PAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQ 129 (186)
Q Consensus 58 i~~~~K~~ii~~i~~~~~~~~~~~~---fl~~L~~~~r~~~l-----~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~ 129 (186)
-..-++...+.++++.+..+|.... .+-+.+.+|-++-+ ...-..+..++..........+....+++++..
T Consensus 36 ~~~l~rG~rl~ElLKQ~q~~Pl~v~eQv~iL~A~~~G~lD~i~v~~I~~fe~~ll~~l~~~~~~~l~~I~~~~~l~de~~ 115 (131)
T d2jdia1 36 QQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEESD 115 (131)
T ss_dssp HHHHHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHTTTTTTSCGGGHHHHHHHHHHHHHHTCHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCHHHH
T ss_conf 86210699999999662221110899999999996587443677999999999999998868899999988599998999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999997
Q gi|254780618|r 130 NKLGECLEKI 139 (186)
Q Consensus 130 ~~i~~~l~~~ 139 (186)
+.|.+.++..
T Consensus 116 ~~L~~ai~~f 125 (131)
T d2jdia1 116 AKLKEIVTNF 125 (131)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 7
>d1oqka_ b.137.1.1 (A:) Hypothetical protein MTH11 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=18.33 E-value=20 Score=13.82 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=15.6
Q ss_pred HCCEEEEEEEECCCHHC--EEEEE
Q ss_conf 48958999999741402--38999
Q gi|254780618|r 140 VGKTVILDVMEDSALMG--GFIVE 161 (186)
Q Consensus 140 ~~~~i~l~~~vD~slIG--G~~i~ 161 (186)
.|..+++...-||+++| |+++.
T Consensus 5 iG~~i~Vv~S~~pslvGi~GiVv~ 28 (78)
T d1oqka_ 5 IGLSVRIARSVHRDIQGISGRVVD 28 (78)
T ss_dssp SSCEEEEEECSSTTTTTCEEECCE
T ss_pred CCCEEEEEECCCCCCCCCEEEEEE
T ss_conf 197899998499870485789998
No 8
>d2p7ja2 d.110.6.2 (A:9-180) GGDEF family protein VP0354 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=16.29 E-value=27 Score=12.87 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=35.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCH
Q ss_conf 999999998639989999999999999506998999851845220
Q gi|254780618|r 16 SHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSM 60 (186)
Q Consensus 16 A~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~sp~i~~ 60 (186)
..|.-.++.....++...+......+++..++.+.+++.+|.-..
T Consensus 8 ~~~~~ql~~~~~~~~~~l~~~~~~~~lLs~~~~l~~~~~~~~~~~ 52 (172)
T d2p7ja2 8 KEALHQLAYTGREYNNIQDQIETISDLLGHSQSLYDYLREPSKAN 52 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHSCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHH
T ss_conf 999999999999999999999978999862967898873357066
No 9
>d1w5fa2 d.79.2.1 (A:216-336) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}
Probab=14.87 E-value=30 Score=12.64 Aligned_cols=51 Identities=10% Similarity=0.115 Sum_probs=40.2
Q ss_pred HHHHHHEEECCCCCHHHHHHHHHHHHHHHCC--EEEEEEEECCCHHCE-EEEEE
Q ss_conf 5553310105689989999999999997489--589999997414023-89997
Q gi|254780618|r 112 NEVMAFVRAFSGLSLLQQNKLGECLEKIVGK--TVILDVMEDSALMGG-FIVEI 162 (186)
Q Consensus 112 ~~~~~~V~sa~~ls~~~~~~i~~~l~~~~~~--~i~l~~~vD~slIGG-~~i~v 162 (186)
.-..+.++....++-.+.+.+.+.++..++. .+.+-..+||++-+| ++|-+
T Consensus 55 ~gvLv~i~~g~d~sl~ei~~~~~~i~~~~~~da~ii~G~~~d~~l~~~~i~Vti 108 (121)
T d1w5fa2 55 SSIVFNITAPSNIRMEEVHEAAMIIRQNSSEDADVKFGLIFDDEVPDDEIRVIF 108 (121)
T ss_dssp SEEEEEEEECTTCCHHHHHHHHHHHHTTSCTTSEEEEEEEECTTSCTTEEEEEE
T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCEEEEEE
T ss_conf 669999995788998999999999998628997499856788777799699999
No 10
>d1b9la_ d.96.1.3 (A:) 7,8-dihydroneopterin triphosphate epimerase {Escherichia coli [TaxId: 562]}
Probab=13.99 E-value=31 Score=12.48 Aligned_cols=45 Identities=16% Similarity=0.018 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCC
Q ss_conf 468999998533201101424999999988876555331010568
Q gi|254780618|r 79 ITANFLRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSG 123 (186)
Q Consensus 79 ~~~~fl~~L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ 123 (186)
.+.+.+.-++.++++.+++..++.....+....+...++|...+|
T Consensus 58 ~i~~~i~~~~~~~~~~liE~la~~i~~~i~~~~~v~~v~v~i~KP 102 (119)
T d1b9la_ 58 TVTKNIIQHVENNRFSLLEKLTQDVLDIAREHHWVTYAEVEIDKL 102 (119)
T ss_dssp HHHHHHHHHHHTSEESCHHHHHHHHHHHHTCSTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 999999999866862029999999999997227996799999999
Done!