RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780618|ref|YP_003065031.1| F0F1 ATP synthase subunit
delta [Candidatus Liberibacter asiaticus str. psy62]
(186 letters)
>gnl|CDD|184049 PRK13429, PRK13429, F0F1 ATP synthase subunit delta; Provisional.
Length = 181
Score = 127 bits (321), Expect = 2e-30
Identities = 61/171 (35%), Positives = 100/171 (58%)
Query: 14 RYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVIDDLVKD 73
RY+ +LF ++ E+G LD V +++ +L LL +S +LR + NP+ S +++++V++ L+
Sbjct: 9 RYAKALFQLAKEKGQLDSVYEELKQLAELLEDSPELRDALSNPVLSAEEKKAVLEKLLGK 68
Query: 74 AHFCAITANFLRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLG 133
NFL++L RL +LP I + + + V A V + LS QQ +
Sbjct: 69 LKVSPEVLNFLKLLADRRRLGILPEIAARYLELADEQKGIVRATVTSAVPLSEAQQEAIR 128
Query: 134 ECLEKIVGKTVILDVMEDSALMGGFIVEIGAHQIDASLRTQLLKLGCILKE 184
+ LEK+ GK V LD D +L+GG +V+IG +DAS+RTQL +L LK+
Sbjct: 129 QKLEKMTGKKVELDTAVDPSLIGGVVVKIGDKVLDASVRTQLRRLKETLKK 179
>gnl|CDD|180239 PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated.
Length = 177
Score = 124 bits (314), Expect = 1e-29
Identities = 58/165 (35%), Positives = 97/165 (58%), Gaps = 3/165 (1%)
Query: 14 RYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVIDDLVKD 73
Y+ +LF V+ E+G LD S++++ L A + E+ DL + +PL S + ++ ++ + K
Sbjct: 10 PYAKALFEVALEKGSLDAWSEELTFL-AEVAENEDLAALLSSPLVSAEQKKKLLAAVFKS 68
Query: 74 AHFCAITANFLRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLG 133
NFL++L NGRL++LP I++ F A+ + N V A V + LS Q +KL
Sbjct: 69 LS--EYVQNFLKVLAENGRLALLPEILEQFEALRAEHENIVDAEVTSAFPLSEEQLDKLK 126
Query: 134 ECLEKIVGKTVILDVMEDSALMGGFIVEIGAHQIDASLRTQLLKL 178
LEK +G+ V L+ D +L+GG I+++G ID S+R +L +L
Sbjct: 127 AALEKRLGRKVKLNEKVDPSLIGGVIIKVGDRVIDGSVRGKLERL 171
>gnl|CDD|130215 TIGR01145, ATP_synt_delta, ATP synthase, F1 delta subunit. This
model describes the ATP synthase delta subunit in
bacteria, mitochondria, and chloroplasts. It is
sometimes called OSCP for Oligomycin Sensitivity
Conferring Protein. F1/F0-ATP synthase is a
multisubunit, membrane associated enzyme found in
bacteria and organelles of higher eukaryotes, namely,
mitochondria and chloroplast. This enzyme is principally
involved in the synthesis of ATP from ADP and inorganic
phosphate by coupling the energy derived from the proton
electrochemical gradient across the biological membrane.
A brief description of this multisubunit enzyme complex:
F1 and F0 represent two major clusters of subunits.
Delta subunit belongs to the F1 cluster or sector and
functionally implicated in the overall stability of the
complex. Expression of truncated forms of this subunit
results in low ATPase activity.
Length = 172
Score = 84.3 bits (209), Expect = 2e-17
Identities = 56/172 (32%), Positives = 90/172 (52%), Gaps = 6/172 (3%)
Query: 14 RYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVIDDLVKD 73
Y+ +LF ++NE+ L+ + ++ ++ +L + +L+ F+ NPL S + ++ I ++ +
Sbjct: 4 PYAKALFEIANEKSSLEEWGEMLNFVKEVLKNNKELKKFLSNPLISAEKKKEFIKNVFGE 63
Query: 74 AHFCAITANFLRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLL--QQNK 131
+ N L +L NGRL+ LP I+ F + Y + A V S L QQ K
Sbjct: 64 -QLDESSLNLLLLLAENGRLAALPDILDQFLK--LSYEAQQTADVEVISAKPLTEDQQAK 120
Query: 132 LGECLEKIVGKT-VILDVMEDSALMGGFIVEIGAHQIDASLRTQLLKLGCIL 182
+ E LEKI G V L+ D L+GG I+ IG ID S+R QL +L L
Sbjct: 121 IAEKLEKITGAAKVKLNCKVDKDLIGGVIIRIGDRVIDGSVRGQLKRLSRQL 172
>gnl|CDD|139571 PRK13434, PRK13434, F0F1 ATP synthase subunit delta; Provisional.
Length = 184
Score = 76.5 bits (188), Expect = 3e-15
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 4/167 (2%)
Query: 9 SDVPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVID 68
S V Y+ +L G +N + V ++ L LL + +R F +P S +++ +
Sbjct: 4 SGVSKVYASALLGAAN---SPEEVEQELGDLVQLLFKDEKIRNFFLSPTVSPEEKEQTLA 60
Query: 69 DLVKDAHFCAITANFLRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQ 128
++ IT NFL +L+ GR LP I K F + V A + ++ L Q
Sbjct: 61 KNLR-GKISDITLNFLGVLLNKGRFIYLPEIQKDFTVELDKKKGRVRAQIVSYPSLEPAQ 119
Query: 129 QNKLGECLEKIVGKTVILDVMEDSALMGGFIVEIGAHQIDASLRTQL 175
+KLG L + IL+V ED L+GGF+V+ +I+ S+ +QL
Sbjct: 120 VDKLGSILSEKFKSEFILEVSEDKNLLGGFVVQFNDLKIEKSIASQL 166
>gnl|CDD|184054 PRK13441, PRK13441, F0F1 ATP synthase subunit delta; Provisional.
Length = 180
Score = 55.9 bits (135), Expect = 7e-09
Identities = 40/180 (22%), Positives = 79/180 (43%), Gaps = 19/180 (10%)
Query: 8 FSDVPGRYSHSLFGVSNEEG-------VLDIVSDDISRLEALLMESADLRFFIHNPLFSM 60
+S + +Y+ +L V+ E LD+V + ESA + F NP+
Sbjct: 3 YSAIASKYARALLNVAIELEKEEEYGEFLDLVCQ--------IYESA--KEFFDNPIVKP 52
Query: 61 KDRRSVIDDLVKD--AHFCAITANFLRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFV 118
+ + S+I +++K+ NFL ++ N R +LP I F + +V +
Sbjct: 53 EKKVSLIKEIMKEFGQEMDEFFENFLNLVFENKRQKLLPQIRALFEYEKILSEQKVPVNL 112
Query: 119 RAFSGLSLLQQNKLGECLEKIVGKTVILDVMEDSALMGGFIVEIGAHQIDASLRTQLLKL 178
LS + L + + K V + + + D +L+ G +VE ++D +++ +L K+
Sbjct: 113 TTAHELSDEELKLLRKFVRKYVLRDPVFEETIDESLIAGAVVEFEGKRLDVTVQGRLKKI 172
>gnl|CDD|184053 PRK13436, PRK13436, F0F1 ATP synthase subunit delta; Provisional.
Length = 179
Score = 53.1 bits (128), Expect = 4e-08
Identities = 36/169 (21%), Positives = 75/169 (44%), Gaps = 1/169 (0%)
Query: 7 LFSDVPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSV 66
L + Y+ +LF ++NEE ++ +++ ++ +L + DL + + +++ +
Sbjct: 3 LKNKNIYNYAEALFDIANEENNVEKYINEVFKIIEILKNNKDLIKLLTSYFIDKEEKFKI 62
Query: 67 IDDLVKDAHFCAITANFLRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSL 126
ID + A NFL+IL N + I+K F + N + LS
Sbjct: 63 IDKIFS-AKIDIYLVNFLKILAKNNLFIYIKQILKKFVKLSNEKLNITYGEIYTTEPLSE 121
Query: 127 LQQNKLGECLEKIVGKTVILDVMEDSALMGGFIVEIGAHQIDASLRTQL 175
+Q ++ L K + K V L D L+ G +++ + S++++L
Sbjct: 122 VQISRFESKLSKKLNKKVHLVNKIDPKLIAGIKIKVDNKVFENSIKSKL 170
>gnl|CDD|184050 PRK13430, PRK13430, F0F1 ATP synthase subunit delta; Provisional.
Length = 271
Score = 49.9 bits (120), Expect = 4e-07
Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 1/153 (0%)
Query: 26 EGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFCAITANFLR 85
+G LD V D++ RL +L + +LR + + + +R ++ L+ +T
Sbjct: 114 QGALDDVEDELFRLGRILASNPELRLALSDRAAPAEAKRELLARLLYGK-VTPVTERLAE 172
Query: 86 ILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIVGKTVI 145
V R + + + R +A V LS Q+ +L L +I G+ V
Sbjct: 173 QAVGRPRGRSIEEGLDELSNLAAARRGRSVATVTTAVPLSDEQKQRLAAALSRIYGRPVH 232
Query: 146 LDVMEDSALMGGFIVEIGAHQIDASLRTQLLKL 178
L+ D +++GG V++G ID S+ +L +L
Sbjct: 233 LNSEVDPSVLGGMRVQVGDEVIDGSVAGRLERL 265
>gnl|CDD|181440 PRK08474, PRK08474, F0F1 ATP synthase subunit delta; Validated.
Length = 176
Score = 44.6 bits (106), Expect = 2e-05
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 8/136 (5%)
Query: 14 RYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRF--FIHNPLFSMKDRRSVIDDLV 71
RY+ +L + + + DI S+ + L + AD +F I +P S + + + V
Sbjct: 8 RYAKALLSSLSSDELNDIYSN-LKILSSAF---ADEKFKEIISSPEISKEQKIEFLLSFV 63
Query: 72 KDAHFCAITANFLRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNK 131
+A+ A NF+++L N RL ++PAI K NE + V + LS K
Sbjct: 64 DNAN--AKFQNFIKLLAENKRLELIPAIAKELERQIALKENEYVGVVYSNEKLSEETLKK 121
Query: 132 LGECLEKIVGKTVILD 147
L E L K + L
Sbjct: 122 LEEKLSKKFNAKIKLK 137
>gnl|CDD|184048 PRK13428, PRK13428, F0F1 ATP synthase subunit delta; Provisional.
Length = 445
Score = 44.3 bits (105), Expect = 2e-05
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 111 RNEVMAFVRAFSGLSLLQQNKLGECLEKIVGKTVILDVMEDSALMGGFIVEIGAHQIDAS 170
R EV+A V A + LS Q+ +L E L +I G+ V + + D L+GG + +G ID +
Sbjct: 372 RGEVVAQVSAAAELSDAQRTRLTEVLSRIYGRPVSVQLHIDPELLGGLSIAVGDEVIDGT 431
Query: 171 LRTQLLK 177
L ++L
Sbjct: 432 LSSRLAA 438
>gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA
hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA
hydratase, also called dienoyl-CoA hydratase, acts on
the product of benzoyl-CoA reductase (EC 1.3.99.15).
Benzoyl-CoA is a common intermediate in the degradation
of many aromatic compounds, and this enzyme is part of
an anaerobic pathway for dearomatization and
degradation.
Length = 251
Score = 29.5 bits (66), Expect = 0.48
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 73 DAHFCAITANFLRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLS 125
D H ++A+ LR V RL + + V Y E+MA A GL+
Sbjct: 186 DEHPAKLSASSLRFAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLN 238
>gnl|CDD|149409 pfam08337, Plexin_cytopl, Plexin cytoplasmic RasGAP domain. This
family features the C-terminal regions of various
plexins. Plexins are receptors for semaphorins, and
plexin signalling is important in path finding and
patterning of both neurons and developing blood
vessels. The cytoplasmic region, which has been called
a SEX domain in some members of this family, is
involved in downstream signalling pathways, by
interaction with proteins such as Rac1, RhoD, Rnd1 and
other plexins. This domain acts as a RasGAP domain.
Length = 538
Score = 28.9 bits (65), Expect = 0.75
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 6 ALFSDVPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIH----NPLFSMK 61
F D PG +H L E V +++ LL + L FIH FS++
Sbjct: 15 VFFPD-PGHETHPLLRDLVPESRRPTVEQGLTQFSQLLNNKSFLLTFIHTLESQRSFSVR 73
Query: 62 DRRSV 66
DR +V
Sbjct: 74 DRCNV 78
>gnl|CDD|180653 PRK06669, fliH, flagellar assembly protein H; Validated.
Length = 281
Score = 28.4 bits (64), Expect = 1.0
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 128 QQNKLGECLEKIVGKTVILDVMEDSAL-MGGFIVEIGAHQIDASLRTQLLKLGCILKEV 185
Q+++L L+ + ED A+ GG ++E IDA + TQL +L L E
Sbjct: 223 QKDELISLLDNEEHLKIY----EDDAISKGGCVIETDFGNIDARIDTQLKQLKEKLLEN 277
>gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional.
Length = 384
Score = 27.4 bits (61), Expect = 2.6
Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 19/131 (14%)
Query: 40 EALLMESADLRFFIHNPL-FSMKDRRSVIDDLVKDAHFCAITANFLRILVANGRLSVLPA 98
++ E A L + + S+ D + D+ + +A F R + G + ++
Sbjct: 15 VNIMAEIATLAKKFPDIIDLSLGDPDLITDESIINAAFEDAKKGHTRYTDSGGDVELIEE 74
Query: 99 IIKSFRAVCMYY--RNEVMAFVRAFSGLSLLQQNKLGECLEKIV---------------- 140
IIK + RNE+MA V A G+ L Q+ L E I+
Sbjct: 75 IIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQIEMVG 134
Query: 141 GKTVILDVMED 151
GK +IL+ E+
Sbjct: 135 GKPIILETYEE 145
>gnl|CDD|163537 TIGR03825, FliH_bacil, flagellar assembly protein FliH. This
bacillus clade of FliH proteins is not found by the Pfam
FliH model pfam02108, but is closely related to the
sequences identified by that model. Sequences identified
by this model are observed in flagellar operons in an
analogous position relative to other flagellar operon
genes.
Length = 255
Score = 27.1 bits (60), Expect = 3.0
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 136 LEKIVGKTVILDVMEDSALM-GGFIVEIGAHQIDASLRTQLLKL 178
L+ I+ L V D L GG VE +IDAS+ TQL +L
Sbjct: 197 LQSILPACEHLAVYPDEKLPDGGCYVETNFGRIDASVDTQLEQL 240
>gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase;
Provisional.
Length = 442
Score = 27.0 bits (60), Expect = 3.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 35 DISRLEALLMESADLRFFIHNPLFSMKDRRSVID 68
D+ E LL +A L + + L S++D VID
Sbjct: 337 DLYEREGLLTRAARLAPYWEDALHSLRDAPHVID 370
>gnl|CDD|131447 TIGR02394, rpoS_proteo, RNA polymerase sigma factor RpoS. A sigma
factor is a DNA-binding protein protein that binds to
the DNA-directed RNA polymerase core to produce the
holoenzyme capable of initiating transcription at
specific sites. Different sigma factors act in
vegetative growth, heat shock, extracytoplasmic
functions (ECF), etc. This model represents the clade of
sigma factors called RpoS (also called sigma-38, KatF,
etc.), found only in Proteobacteria. This sigma factor
is induced in stationary phase (in response to the
stress of nutrient limitation) and becomes the second
prinicipal sigma factor at that time. RpoS is a member
of the larger Sigma-70 subfamily (TIGR02937) and most
closely related to RpoD (TIGR02393).
Length = 285
Score = 26.6 bits (59), Expect = 3.9
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 25 EEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDR-RSVI 67
+ +LD ++D+ S L+++ DL+ I L + +R R V+
Sbjct: 188 SKSLLDTIADEQSIDPESLVQNDDLKQLIEAWLAELNERQREVL 231
>gnl|CDD|181453 PRK08508, PRK08508, biotin synthase; Provisional.
Length = 279
Score = 26.5 bits (59), Expect = 4.1
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 15/73 (20%)
Query: 33 SDDISRLEALLM---ESADLRFFIHNPLFSMKDRRSVIDD---LVKDAHFCAITANFL-- 84
D IS L++L S + FFI NP +K D+ +V+ A L
Sbjct: 166 EDRISFLKSLASLSPHSTPINFFIPNPALPLKAPTLSADEALEIVRLAK------EALPN 219
Query: 85 -RILVANGRLSVL 96
R++VA GR V
Sbjct: 220 ARLMVAGGREVVF 232
>gnl|CDD|178972 PRK00310, rpsC, 30S ribosomal protein S3; Reviewed.
Length = 232
Score = 26.3 bits (59), Expect = 4.4
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 11/42 (26%)
Query: 130 NKLGECLEKIVGKTVILDVMEDSALMGGFIVEIGAHQIDASL 171
KL + LEK+ GK V ++ IVE+ ++DA L
Sbjct: 85 EKLRKELEKLTGKPVQIN-----------IVEVKKPELDAQL 115
>gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional.
Length = 460
Score = 26.4 bits (58), Expect = 4.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 7 LFSDVPGRYSHSLFGVSNEE 26
LFS +PG YSH+++ S E
Sbjct: 107 LFSLLPGHYSHAIYTNSGSE 126
>gnl|CDD|182106 PRK09841, PRK09841, cryptic autophosphorylating protein tyrosine
kinase Etk; Provisional.
Length = 726
Score = 26.4 bits (58), Expect = 4.5
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 7 LFSDVPGR--YSHSLFGVSNEEGVLDIVS 33
LF D R YSH+LF VSNE G+ + ++
Sbjct: 564 LFIDADLRRGYSHNLFTVSNEHGLSEYLA 592
>gnl|CDD|152287 pfam11851, DUF3371, Domain of unknown function (DUF3371). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 125 to 142 amino acids in length.
Length = 131
Score = 26.2 bits (58), Expect = 4.6
Identities = 10/52 (19%), Positives = 19/52 (36%)
Query: 8 FSDVPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFS 59
+D +S L + + S+L+ +LM+ +PL S
Sbjct: 58 LNDGTITFSDPLSHFTGSPFSYSSPLKEESKLDDILMDDTLSPLGGSDPLLS 109
>gnl|CDD|178002 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring).
Length = 433
Score = 25.7 bits (56), Expect = 7.4
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 101 KSFRAVC--MYYRNEVMAFVRAFSG 123
+SF +C MYYR ++ FV ++G
Sbjct: 99 RSFEDMCAQMYYRGKMFGFVHLYNG 123
>gnl|CDD|147863 pfam05941, Chordopox_A20R, Chordopoxvirus A20R protein. This
family consists of several Chordopoxvirus A20R proteins.
The A20R protein is required for DNA replication, is
associated with the processive form of the viral DNA
polymerase, and directly interacts with the viral
proteins encoded by the D4R, D5R, and H5R open reading
frames. A20R may contribute to the assembly or stability
of the multiprotein DNA replication complex.
Length = 334
Score = 25.7 bits (57), Expect = 8.1
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 37 SRLEALLMESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFCAITANFLRILVANGRLSVL 96
S ++ALL + D+ F F R +++D I L++ A G L+V+
Sbjct: 111 SIIDALLADYPDIEFL----RFVYFKNRWILEDAFSKYS-SPI--EILKLASAEG-LNVV 162
Query: 97 PAI 99
P +
Sbjct: 163 PYL 165
>gnl|CDD|130304 TIGR01237, D1pyr5carbox2, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 2, putative. This enzyme is the
second of two in the degradation of proline to
glutamate. This model represents one of several related
branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. Members of this branch may be associated
with proline dehydrogenase (the other enzyme of the
pathway from proline to glutamate) but have not been
demonstrated experimentally. The branches are not as
closely related to each other as some distinct aldehyde
dehydrogenases are to some; separate models were built
to let each model describe a set of equivalogs.
Length = 511
Score = 25.6 bits (56), Expect = 8.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 139 IVGKTVILDVMEDSALMGGFIVEI 162
+ G V+L E S ++ IVEI
Sbjct: 193 VTGNCVVLKPAETSTVIAAKIVEI 216
>gnl|CDD|128811 smart00538, POP4, A domain found in a protein subunit of human
RNase MRP and RNase P ribonucleoprotein complexes and
archaeal proteins.
Length = 92
Score = 25.3 bits (56), Expect = 8.7
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 80 TANFLRILVANGRLSVLPAIIKSFR 104
T N L+I GR+ +P F
Sbjct: 37 TRNTLKIETKEGRVKTVPKDGAVFE 61
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.327 0.141 0.401
Gapped
Lambda K H
0.267 0.0640 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,998,865
Number of extensions: 187503
Number of successful extensions: 468
Number of sequences better than 10.0: 1
Number of HSP's gapped: 461
Number of HSP's successfully gapped: 41
Length of query: 186
Length of database: 5,994,473
Length adjustment: 88
Effective length of query: 98
Effective length of database: 4,092,969
Effective search space: 401110962
Effective search space used: 401110962
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.8 bits)